Borrelia coriaceae strain Co53 plasmid lp24-2, complete sequence.
type: Entry
definition: Borrelia coriaceae strain Co53 plasmid lp24-2, complete sequence.
sequence version: NZ_CP075087.1
sequence date: 2023-05-09
sequence: sequence
division: CON
label: NZ_CP075087.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18441555
keyword: RefSeq
source: Borrelia coriaceae
organism: Borrelia coriaceae
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075087.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 141.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:11:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,761\nCDSs (total) :: 1,723\nGenes (coding) :: 1,660\nCDSs (with protein) :: 1,660\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 31 of 63\nPseudo Genes (incomplete) :: 29 of 63\nPseudo Genes (internal stop) :: 16 of 63\nPseudo Genes (multiple problems) :: 12 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23569
topology: linear
so has quality: SO_0000987
location: 1..23569
location: region:1-23569:1
RO_0002162: 144

NZ_CP075087
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18441555
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kneubehl, A.R.
author: Lopez, J.
journal: Submitted (15-APR-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23569:1
position: 23569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23569:1:source
so part of: sequence
organism: Borrelia coriaceae
mol type: genomic DNA
strain: Co53
isolation source: tick tissue
host: Ornithodoros coriaceus
type material: type strain of Borrelia coriaceae
plasmid: lp24-2
country: USA: California
collection date: 1985

144
type: Taxonomy
SIO_000068: taxonomy

bcCo53_RS06735
type: Gene
subclass of: SO_0000704
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06735
so part of: sequence
location: complement(553..1161)
location: region:553-1161:-1
so has part: feature:553-1161:-1:exon
subclass of: SO_0000010

position:553:-1
position: 553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1161:-1
position: 1161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553-1161:-1:exon

bcCo53_RS06735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGLAQPIVTQQMVVAELTKAGIARDIAIDLSYRYYRNELTYKDIEYLENTFNLKLEKLESNLKSDIRDLDNKIDIKFNDLNNKIDTVENGLNVKVENVRGELKSDIKDLDSKIDNVENNLNVRIENVRNELKSDIKDLDNKIDVVRSELKSDIKDLDNKIDNVRKDIEINKMEFKSTLRLHNWMFGTIITICLGILLTLIFK
SIO_010081: bcCo53_RS06735
subclass of: SO_0000673
so part of: bcCo53_RS06735
location: complement(553..1161)
location: region:553-1161:-1
so has part: feature:553-1161:-1:exon

WP_025409063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:553-1161:-1:exon

bcCo53_RS06740
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06740
old locus tag: bcCo53_001347
so part of: sequence
location: complement(1244..1813)
location: region:1244-1813:-1
so has part: feature:1244-1813:-1:exon
subclass of: SO_0000010

position:1244:-1
position: 1244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1813:-1
position: 1813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1244-1813:-1:exon

bcCo53_RS06740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06740
old locus tag: bcCo53_001347
inference: COORDINATES: protein motif:HMM:NF037202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type ISP restriction/modification enzyme
translation: MKSFKKYLALNPQEILGYICVILSSNIYRTKFNEFLRIDFAKIIFVDSVNLFEKLSKLGMNLINAQLFRNVIDLDKSVGVHISKVNEKCIVEKVEYLKDKKELIYSDNCKFINVPFKVYEFSIGTYRVLKNYLRLRKGRELNNDEIAHLENVIRVINYTFDIQEQIDLIICNLQEFSSNDDLSSLSLVS
SIO_010081: bcCo53_RS06740
subclass of: SO_0000673
so part of: bcCo53_RS06740
location: complement(1244..1813)
location: region:1244-1813:-1
so has part: feature:1244-1813:-1:exon

WP_246938439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1244-1813:-1:exon

bcCo53_RS06745
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06745
old locus tag: bcCo53_001348
so part of: sequence
location: complement(1819..2913)
location: region:1819-2913:-1
so has part: feature:1819-2913:-1:exon
subclass of: SO_0000010

position:1819:-1
position: 1819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2913:-1
position: 2913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1819-2913:-1:exon

bcCo53_RS06745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06745
old locus tag: bcCo53_001348
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKEINSSLLLLVALIVISCDQRVETQGTELKKIIPKKTEFKPVKPVGVSEPSPLLSSFGGILEVKPYDQKREVKEEQDQGLLIPEEEQNLEEEQRNREALLSSCLKEASLPINFDAVHKEKLHLDFIEGVPRHVKTKEEALKQFDGIRYIFYILKPSFKSAKPYNSMGEGYPSLIFDDIFNNRKLLNYNFRADAIYAAFGHDSNFIYALAFGIHKMLFSRPRITGVANEIIERKYETEQRKYKEVILSLLNMIGPMAASTLRLLWFKMSDPVHYKNFSIKATKEELIVLNHAVEKYMNMLEKMYVRIYEVIDCAIGKKDHSPEIFYDTFNALINSKSIKEGARAVSYEAFEIRNLMERILNRD
SIO_010081: bcCo53_RS06745
subclass of: SO_0000673
so part of: bcCo53_RS06745
location: complement(1819..2913)
location: region:1819-2913:-1
so has part: feature:1819-2913:-1:exon

WP_246938440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1819-2913:-1:exon

bcCo53_RS06750
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06750
old locus tag: bcCo53_001349
so part of: sequence
location: complement(3039..4286)
location: region:3039-4286:-1
so has part: feature:3039-4286:-1:exon
subclass of: SO_0000010

position:3039:-1
position: 3039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4286:-1
position: 4286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3039-4286:-1:exon

bcCo53_RS06750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06750
old locus tag: bcCo53_001349
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539624.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISKGKPTKGHNIEFSIVESLRLNFEFLIRNIWLILFALFLFFFNVLHSHRGIASYTVGSSSKLYFTLPFTIVVIVVPSSILLYFLYLLRKRVTEGSVRISVFACLEKIAIFVLLVIGLITQSVSSWMSFESFFSLMFEDTIKDTVLSTQKSQIAKEEGMRKLLSDKEKIIEGEIASIDIKIKNNNDRIEFAKNKHLSLDYTYRTMKQDYMREIENASRENKELFNQRNEYLESLQDLRFKLSSLIERSAVNNNKFKAANVLNGTSVVIARDDYLNIIFVYSLLLLSVCLDIFLAMVFCIIQNAYHKFYEQKLLHLVTLSTGSGVGIKEKVKNHQISSLERKKRTSKRVDESLEFIVSNLEDDKRTIKPLRKINKETNVSAYQIKKYLSDLMDRGFIIKNKKRLVLNNDAAIEKL
SIO_010081: bcCo53_RS06750
subclass of: SO_0000673
so part of: bcCo53_RS06750
location: complement(3039..4286)
location: region:3039-4286:-1
so has part: feature:3039-4286:-1:exon

WP_246938441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3039-4286:-1:exon

bcCo53_RS06755
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06755
old locus tag: bcCo53_001350
so part of: sequence
location: complement(4593..5480)
location: region:4593-5480:-1
so has part: feature:4593-5480:-1:exon
subclass of: SO_0000010

position:4593:-1
position: 4593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5480:-1
position: 5480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4593-5480:-1:exon

bcCo53_RS06755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06755
old locus tag: bcCo53_001350
inference: COORDINATES: protein motif:HMM:NF013114.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKIKIQSICATLFISLFLSCNNGVIEELQKQRDFILSISNLRQGFLDIFTSFGNMVSDTLSIKADTKKEDIGKCFTNIEETMKTTKEKLKDVLAKNGNYPKVKGEVEKFIEKLGIIEKGAKEAAEGAIGGDAISGATASGQDAVAADVTSVTALVKGIKGIVGVVLKQGEGDPTATKTKDAQQQTIGKLFSEKKSNGGTEVQAAAASASIGAISGTDILRAIAMSGDVTIGGVAINEVKDAANIAAGKTDSAQDLTVGSAKKDAVIAAGIALRAMAKGGKFAKMRQQLKKSIDFF
SIO_010081: bcCo53_RS06755
subclass of: SO_0000673
so part of: bcCo53_RS06755
location: complement(4593..5480)
location: region:4593-5480:-1
so has part: feature:4593-5480:-1:exon

WP_051428658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4593-5480:-1:exon

bcCo53_RS06760
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06760
pseudo: true
so part of: sequence
location: complement(5609..6034)
location: region:5609-6034:-1
so has part: feature:5609-6034:-1:exon
subclass of: SO_0000010

position:5609:-1
position: 5609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6034:-1
position: 6034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5609-6034:-1:exon

bcCo53_RS06760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06760
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bcCo53_RS06760
subclass of: SO_0000673
so part of: bcCo53_RS06760
location: complement(5609..6034)
location: region:5609-6034:-1
so has part: feature:5609-6034:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5609-6034:-1:exon

bcCo53_RS06765
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06765
old locus tag: bcCo53_001353
so part of: sequence
location: complement(6170..6607)
location: region:6170-6607:-1
so has part: feature:6170-6607:-1:exon
subclass of: SO_0000010

position:6170:-1
position: 6170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6607:-1
position: 6607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6170-6607:-1:exon

bcCo53_RS06765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06765
old locus tag: bcCo53_001353
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486249.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MKIKMSKINVVLILLLLVNSCNKYDFTNNTEESKSRGKREISEEQTREIKKTPKEILREKLNEEEKANLDFLKESLGDDFDKFLGHDATKIKSVLEHVKGQLERCNGKDSAEEQKKTFRVVLQGSFKGNSHDLDKFTSEAMGCIW
SIO_010081: bcCo53_RS06765
subclass of: SO_0000673
so part of: bcCo53_RS06765
location: complement(6170..6607)
location: region:6170-6607:-1
so has part: feature:6170-6607:-1:exon

WP_241766591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6170-6607:-1:exon

bcCo53_RS06770
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06770
old locus tag: bcCo53_001354
so part of: sequence
location: complement(6743..7840)
location: region:6743-7840:-1
so has part: feature:6743-7840:-1:exon
subclass of: SO_0000010

position:6743:-1
position: 6743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7840:-1
position: 7840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6743-7840:-1:exon

bcCo53_RS06770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06770
old locus tag: bcCo53_001354
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNINIKSICATLFLSLFLSCNNGIEELEKRNTFLSSLANLGNDFLDIFTSFGDSFGGVLGFNSETKKSEVGNYFKVVHDTVKGTKDNLNAIVEKMKREGNPNTAATEIAVKALNAKLDKIIEGSKTASDAIGDAGEPIANVAPGGDGDTKGDAGDVGKVDNLVGGIKSIVDVVLQGKGSATAGDDKAPVPDAGSAATSRTGSTNAGMLFANTNAGSKTDAPKVAKDAYKAVASVSGADILQAIKNGGNAVTLAKYSQSDGNGAKGKKDAEVAAGIALRAMTKGGKFANTNESSDTKIKVDVATEIKGAAVSAVTKALNTLTIAIRKTIDAGLKSVKDAMKINSSDTPVTIEAGIVQSTTK
SIO_010081: bcCo53_RS06770
subclass of: SO_0000673
so part of: bcCo53_RS06770
location: complement(6743..7840)
location: region:6743-7840:-1
so has part: feature:6743-7840:-1:exon

WP_025408892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6743-7840:-1:exon

bcCo53_RS06775
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06775
old locus tag: bcCo53_001355
so part of: sequence
location: complement(7977..8636)
location: region:7977-8636:-1
so has part: feature:7977-8636:-1:exon
subclass of: SO_0000010

position:7977:-1
position: 7977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8636:-1
position: 8636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7977-8636:-1:exon

bcCo53_RS06775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06775
old locus tag: bcCo53_001355
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MVAKVIGDVVSPQSGLTVNAGKLEKAFKALQGIMEIAKTQKIKELQKSEVSLADTSIGADAKAGARVLAKDENAGAASGEKASLIVSAVSGEEMLDAIVNKSKGNEPEVSGPASVSTTAIAFAKGCITSNLSGGTGDAKAAAVAGGIALRSLVEGGKLAANSSNDGKAVQAAGITAVNKLLGAVEDIIKKTVKNVIDKVKTEVDQARVSKVSVSEAKSK
SIO_010081: bcCo53_RS06775
subclass of: SO_0000673
so part of: bcCo53_RS06775
location: complement(7977..8636)
location: region:7977-8636:-1
so has part: feature:7977-8636:-1:exon

WP_206742078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7977-8636:-1:exon

bcCo53_RS06780
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06780
so part of: sequence
location: complement(8614..8766)
location: region:8614-8766:-1
so has part: feature:8614-8766:-1:exon
subclass of: SO_0000010

position:8614:-1
position: 8614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8766:-1
position: 8766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8614-8766:-1:exon

bcCo53_RS06780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06780
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEQVAEKATADGLFNKAVRVAVDTDKGALGSLKGYLDDLKDIGGGSQSNR
SIO_010081: bcCo53_RS06780
subclass of: SO_0000673
so part of: bcCo53_RS06780
location: complement(8614..8766)
location: region:8614-8766:-1
so has part: feature:8614-8766:-1:exon

WP_206742079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8614-8766:-1:exon

bcCo53_RS06785
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06785
so part of: sequence
location: complement(8779..9003)
location: region:8779-9003:-1
so has part: feature:8779-9003:-1:exon
subclass of: SO_0000010

position:8779:-1
position: 8779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9003:-1
position: 9003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8779-9003:-1:exon

bcCo53_RS06785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06785
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MCNIISLFLSCNNSGESVEEANLGKTMMEMGKSVEEVFYKFIELVSGTLGFTVDTNTTKEQVGEHFKKLGTKLG
SIO_010081: bcCo53_RS06785
subclass of: SO_0000673
so part of: bcCo53_RS06785
location: complement(8779..9003)
location: region:8779-9003:-1
so has part: feature:8779-9003:-1:exon

WP_206742080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8779-9003:-1:exon

bcCo53_RS06790
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06790
old locus tag: bcCo53_001356
so part of: sequence
location: complement(9184..10254)
location: region:9184-10254:-1
so has part: feature:9184-10254:-1:exon
subclass of: SO_0000010

position:9184:-1
position: 9184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10254:-1
position: 10254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9184-10254:-1:exon

bcCo53_RS06790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06790
old locus tag: bcCo53_001356
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIKVKRICATLFISLFLSCNNGIEELEKRNSFLSSLANLGNDFLSIFISFGDMTGTVLGFNTTTKKSDVGNYFTKVKEAVEGVKGKLNTIVESMKSSNNPNAVGVETAVKTLIDNTLDKIIEGAKTVSGAIGTTGDELLGNGSADKTKGGAAGDVDKLVEGMKEIVKLVLGEKGDPNAGDGKKAGNNVEDRTGGSAQGEAGKLFHDSGNSSGIGSSANDAKKAAADAAKAVGSVTGADILQAIVTYGKTMATKATEARAKDATIAGAIALRAMTKDGKFPGVASGGVAADDADYQVAVKGVALSAVTKALDTLTIAIRETIDAGLKTVKKAMNINPEATPVTTESVTATK
SIO_010081: bcCo53_RS06790
subclass of: SO_0000673
so part of: bcCo53_RS06790
location: complement(9184..10254)
location: region:9184-10254:-1
so has part: feature:9184-10254:-1:exon

WP_025408893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9184-10254:-1:exon

bcCo53_RS06795
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06795
old locus tag: bcCo53_001357
so part of: sequence
location: complement(10377..11441)
location: region:10377-11441:-1
so has part: feature:10377-11441:-1:exon
subclass of: SO_0000010

position:10377:-1
position: 10377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11441:-1
position: 11441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10377-11441:-1:exon

bcCo53_RS06795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06795
old locus tag: bcCo53_001357
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633351.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNINIKSICATLFISLFLSCNNGVIEDLQKKNIFSDFLIKIGHGFQDIFGFFGNAMGDALGFSAVKSGDKKSEVGKHFEKVKKGLEDTKNQLSTLSGKISEAKNADGSTIETVKVAIKGTIEVFDKLISSLTKLAGITNDGSTEIGASASSKSDAVNASDVKTVIEGVKDIIDAAEKSGVKIDPGKVGIQVANGNGPKSVFHNAQAADGDAKKLADEVGKADPWAMIDKIRNAKTDGFSASGDNSAGQLATGGSSSANSGTAATNADLAAAVALKAMAKGGKFTQPADSDAGAVVKGAAVSAVNKVLGILNVIIRKTVDIHLDKIGKAVKGIKYSETIGESTEVGIATK
SIO_010081: bcCo53_RS06795
subclass of: SO_0000673
so part of: bcCo53_RS06795
location: complement(10377..11441)
location: region:10377-11441:-1
so has part: feature:10377-11441:-1:exon

WP_025408894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10377-11441:-1:exon

bcCo53_RS06800
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06800
old locus tag: bcCo53_001358
so part of: sequence
location: complement(11630..12325)
location: region:11630-12325:-1
so has part: feature:11630-12325:-1:exon
subclass of: SO_0000010

position:11630:-1
position: 11630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12325:-1
position: 12325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11630-12325:-1:exon

bcCo53_RS06800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06800
old locus tag: bcCo53_001358
inference: COORDINATES: protein motif:HMM:NF013599.2
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MKINIKNINIKSICAILFIFLFLSCNNSGENAEVKEKLRTGQAVTADGTVIDLKLVGDKAKEVVAFVMSIEEIASLINSIDELAKGIGKQINSSGITTDGSNNNKNNGLMAGVYEIASVILTKITGLQVGESLKGKDLETKIETVKTKAGVFKTKLLAQYSTLGAGGGTQDSNAKQAIDRKAHGTDGTHGAKELNELHIAVIDLMNTAKEILSGTIKGIKEPDKEATIKAN
SIO_010081: bcCo53_RS06800
subclass of: SO_0000673
so part of: bcCo53_RS06800
location: complement(11630..12325)
location: region:11630-12325:-1
so has part: feature:11630-12325:-1:exon

WP_025408895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11630-12325:-1:exon

bcCo53_RS06805
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06805
old locus tag: bcCo53_001359
so part of: sequence
location: complement(12452..13534)
location: region:12452-13534:-1
so has part: feature:12452-13534:-1:exon
subclass of: SO_0000010

position:12452:-1
position: 12452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13534:-1
position: 13534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12452-13534:-1:exon

bcCo53_RS06805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06805
old locus tag: bcCo53_001359
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539573.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIRIKSICVTLFISIFLSCNSGVIEELEKKNTFFDSLVKIGHVFQEMFGSFGNSIGDALGFSAVKSDDTRDKIGKHFEKVGEGLKNTKTKLEELSKQIVSTSHADTKEVEAVISTASEMLTKLIDSVAKIAEVTKQAGEIVAIETGGGNAVGAHKESVDVILKEVKEIIETAKEFGINIEKGNPGNLVEKGDDKAGAALVGKNTNAQKPDAKAGPLLADEVSKADPWAMIDKIQNANTSTASLSENNNNEAGALATRVPGGANQNGAKTNADLAAAVALKAMTKGGKFAANNSAEEAGAVKAAAANAVNKVLGILDVIIIKTVIKNLEKVREVVKKIEYSETTGTGTTEANPAK
SIO_010081: bcCo53_RS06805
subclass of: SO_0000673
so part of: bcCo53_RS06805
location: complement(12452..13534)
location: region:12452-13534:-1
so has part: feature:12452-13534:-1:exon

WP_038365436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12452-13534:-1:exon

bcCo53_RS06810
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06810
old locus tag: bcCo53_001360
so part of: sequence
location: complement(13661..14710)
location: region:13661-14710:-1
so has part: feature:13661-14710:-1:exon
subclass of: SO_0000010

position:13661:-1
position: 13661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14710:-1
position: 14710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13661-14710:-1:exon

bcCo53_RS06810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06810
old locus tag: bcCo53_001360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539514.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MRIKSICATLFISLFLSCNNGIEELEKRNTFLSSLANLGNDFLNIFTSFGEMTGTVLGFNKDTKKSDVGKYFKKVQDTVQGTKDKLKEIVANMEKENNPNADAVKKEVEKLVSEKLDTIIKGAKTVSDAIGTTGEDLLGNVAKAAASKAGGVPGTKVGELVEGIKGIVDVVLQGKGNSEAGDTKKAQESSSRSTGTDARKLFDGTASNIDSNAKDAANDASKAVAAVTGADILQAMVKDKGDAAKLAINNATVSGTSPIADSDARDVAIAGGIALRAMANGGKFANGQTNDIAALVQGIAVSAVAKVLNTLTIAIRNTIDTGLKTVKEAMKINPEATPVTTEAAGTVTK
SIO_010081: bcCo53_RS06810
subclass of: SO_0000673
so part of: bcCo53_RS06810
location: complement(13661..14710)
location: region:13661-14710:-1
so has part: feature:13661-14710:-1:exon

WP_028328378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13661-14710:-1:exon

bcCo53_RS06815
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06815
old locus tag: bcCo53_001361
so part of: sequence
location: complement(14881..15906)
location: region:14881-15906:-1
so has part: feature:14881-15906:-1:exon
subclass of: SO_0000010

position:14881:-1
position: 14881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15906:-1
position: 15906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14881-15906:-1:exon

bcCo53_RS06815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06815
old locus tag: bcCo53_001361
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNINIKSICATLFISLFLSCNNSGEELEKLQKDKQFYSSIAKLGNDFLDIFTSFGEMSNSVLGFNTETKKSDVKDYFKNIEKSLTITRTTLDEIVANMEKENNRNASGTKAAVITLNDKLDNIIKGAKAVSDAIADASDPIGNVADASSPAGVEGKIESLIKGIKDIVDVVLKNEGNAEAGDDKKAENLTKRTGGTTAGEAGKLFDNSTHAGDAANSKKAAADAVKAVGAVTGADILKAMIKSSGDNKKDGIIAGTITLRAMAKDGKFAGPNSKTDEAADAIKGAAISAVTKALSTLTIAIRKTIDEGLKEVKKAMKINPDDTPVISDNNISETKK
SIO_010081: bcCo53_RS06815
subclass of: SO_0000673
so part of: bcCo53_RS06815
location: complement(14881..15906)
location: region:14881-15906:-1
so has part: feature:14881-15906:-1:exon

WP_025408897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14881-15906:-1:exon

bcCo53_RS06820
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06820
old locus tag: bcCo53_001362
pseudo: true
so part of: sequence
location: complement(16198..>17172)
location: region:16198-17172:-1
so has part: feature:16198-17172:-1:exon
subclass of: SO_0000010

position:16198:-1
position: 16198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17172:-1
position: 17172
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16198-17172:-1:exon

bcCo53_RS06820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06820
old locus tag: bcCo53_001362
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696751.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bcCo53_RS06820
subclass of: SO_0000673
so part of: bcCo53_RS06820
location: complement(16198..>17172)
location: region:16198-17172:-1
so has part: feature:16198-17172:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16198-17172:-1:exon

bcCo53_RS06825
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06825
old locus tag: bcCo53_001363
so part of: sequence
location: complement(17829..19070)
location: region:17829-19070:-1
so has part: feature:17829-19070:-1:exon
subclass of: SO_0000010

position:17829:-1
position: 17829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19070:-1
position: 19070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17829-19070:-1:exon

bcCo53_RS06825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06825
old locus tag: bcCo53_001363
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539624.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRQDDNKDINVQFSIVESLRFNFECLIRNIWLILFALFLFFFNVLHSHRGIASYEVGSNSKLYFTLPFTIIIIVVPSSILLYFLHLLRKRVTEGSVRISVFAYLEKIAIFVLLVIGLIAQSVSSWMSFESFFSLMFEDTIKDTVLSTQKSQIAKEEGMRKLLFDKEKIIEGEIASIDIKIQNNNDRIEFAKNKHLSLDYRYKTMKQDYMREIENASRENKELFNQRNEYLESLQDLRLKLSSLIERAAVNNNKFKAANVLNGTSAVIAGDDYLNIVFVYLLLLLSVCLDIFLAMVFCIIQNAYHKFYEQKLLHLVPLPTGSGVGVKEKIKNRQISSSRKYKKPLQRVEEVLGFIASNLEDDKRTIKPLRKINKETNISEYRIRQYLSDLMGRGLIIKEKQRLILNVDDTLKR
SIO_010081: bcCo53_RS06825
subclass of: SO_0000673
so part of: bcCo53_RS06825
location: complement(17829..19070)
location: region:17829-19070:-1
so has part: feature:17829-19070:-1:exon

WP_246938442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17829-19070:-1:exon

bcCo53_RS06830
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06830
old locus tag: bcCo53_001364
so part of: sequence
location: complement(19150..19320)
location: region:19150-19320:-1
so has part: feature:19150-19320:-1:exon
subclass of: SO_0000010

position:19150:-1
position: 19150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19320:-1
position: 19320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19150-19320:-1:exon

bcCo53_RS06830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06830
old locus tag: bcCo53_001364
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYKVLQKITKMHSVGFSYGIQLACTGAAVEKIFSYFLNITIHVKLISSQVGVFITN
SIO_010081: bcCo53_RS06830
subclass of: SO_0000673
so part of: bcCo53_RS06830
location: complement(19150..19320)
location: region:19150-19320:-1
so has part: feature:19150-19320:-1:exon

WP_155806476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19150-19320:-1:exon

bcCo53_RS06835
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06835
old locus tag: bcCo53_001365
so part of: sequence
location: 19957..21552
location: region:19957-21552:1
so has part: feature:19957-21552:1:exon
subclass of: SO_0000010

position:19957:1
position: 19957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21552:1
position: 21552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19957-21552:1:exon

bcCo53_RS06835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06835
old locus tag: bcCo53_001365
inference: COORDINATES: protein motif:HMM:NF014468.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MNSVTKDKKNINSNNTKSQIQSILKSLIVLNKDKISPNIKKICISQVKSQITKILKRYHRMLKIYWAINIKNQNYKESCGANGYSASDIYSIVIKLLENDGYTRVCKRTIARDIKLLNEMGLLESKIRRLGKNKGSISHYRQNMELAHLHKEIILEYLKELLKENLKDKIIIGNFDKDADNTEFNYTNLEKFGILAKVSKKNRTSNSSDGNKITPMSRVIGSCVFNEANISNNKNSKELLLKKTNLSKLKKEECRFKRSDVETRLICEHKINKNYLNQIKKYSNNDATYINALINLETAIDEYQSEYYIEDILEHFLKQFGNRYKYKIWMMMRRSDGVISDYAVIWEGRFRDWYPNKYKSPCAVKATYGDNLRIGIKKASVIKEKRAKEQLNVEELKEKEIEKAKEREEQRKREAASLQKYLTGLFERESKEREERLKKAREEELNLKKKARESMLASLERSKERCVGLDISNNGKDNMICASSNEEDMVKFAIRDEFGGFKTTKGLGMVNLGIMIEDVGHNENLKEKESK
SIO_010081: bcCo53_RS06835
subclass of: SO_0000673
so part of: bcCo53_RS06835
location: 19957..21552
location: region:19957-21552:1
so has part: feature:19957-21552:1:exon

WP_246938443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19957-21552:1:exon

bcCo53_RS06840
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06840
old locus tag: bcCo53_001366
so part of: sequence
location: 21616..22017
location: region:21616-22017:1
so has part: feature:21616-22017:1:exon
subclass of: SO_0000010

position:21616:1
position: 21616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22017:1
position: 22017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21616-22017:1:exon

bcCo53_RS06840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06840
old locus tag: bcCo53_001366
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSREVQSKSTDKKIINFPILSSEDIDYEYVYAYLKDWVGKKHRAGHGIIINRVGDNYECETIQGALMSNILDMIFEDYNELLLGGLERESVDSKVGDGDIEPVDVLEGKREVPFERLQGKQSKGFKKGKITII
SIO_010081: bcCo53_RS06840
subclass of: SO_0000673
so part of: bcCo53_RS06840
location: 21616..22017
location: region:21616-22017:1
so has part: feature:21616-22017:1:exon

WP_246938444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21616-22017:1:exon

bcCo53_RS06845
type: Gene
subclass of: SO_0000704
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06845
so part of: sequence
location: complement(22065..22904)
location: region:22065-22904:-1
so has part: feature:22065-22904:-1:exon
subclass of: SO_0000010

position:22065:-1
position: 22065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22904:-1
position: 22904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22065-22904:-1:exon

bcCo53_RS06845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGLPQPVITQQMVIAELTKAGINKDIAIDLSYRYYRNELTYKDIEFLKENFDIKLEKVEGMLQAEIQKVEASLQSEIQKVEANLQSEIKAVKTELDNKIDNKFNELDNKIDNKFNELDNKINIVENNLNNKIDNKFNELDNKIDNVENNLNNKIDNKFNELDNKINNVRNELKSDIKDLDNKIDNKFNELDNKIDNVENNLNNKIDNVRNELKSDIKDLDNKIDNVSNEIALVRKDMEINKMELNKTLSEFDNKLKLHKWMFTTIITISIGILLTLIFK
SIO_010081: bcCo53_RS06845
subclass of: SO_0000673
so part of: bcCo53_RS06845
location: complement(22065..22904)
location: region:22065-22904:-1
so has part: feature:22065-22904:-1:exon

WP_025409102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22065-22904:-1:exon