Borrelia coriaceae strain Co53 plasmid lp23, complete sequence.
type: Entry
definition: Borrelia coriaceae strain Co53 plasmid lp23, complete sequence.
sequence version: NZ_CP075085.1
sequence date: 2023-05-09
sequence: sequence
division: CON
label: NZ_CP075085.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18441555
keyword: RefSeq
source: Borrelia coriaceae
organism: Borrelia coriaceae
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075085.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 141.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:11:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,761\nCDSs (total) :: 1,723\nGenes (coding) :: 1,660\nCDSs (with protein) :: 1,660\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 31 of 63\nPseudo Genes (incomplete) :: 29 of 63\nPseudo Genes (internal stop) :: 16 of 63\nPseudo Genes (multiple problems) :: 12 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22615
topology: linear
so has quality: SO_0000987
location: 1..22615
location: region:1-22615:1
RO_0002162: 144

NZ_CP075085
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18441555
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kneubehl, A.R.
author: Lopez, J.
journal: Submitted (15-APR-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22615:1
position: 22615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22615:1:source
so part of: sequence
organism: Borrelia coriaceae
mol type: genomic DNA
strain: Co53
isolation source: tick tissue
host: Ornithodoros coriaceus
type material: type strain of Borrelia coriaceae
plasmid: lp23
country: USA: California
collection date: 1985

144
type: Taxonomy
SIO_000068: taxonomy

bcCo53_RS06500
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06500
old locus tag: bcCo53_001298
so part of: sequence
location: 394..549
location: region:394-549:1
so has part: feature:394-549:1:exon
subclass of: SO_0000010

position:394:1
position: 394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549:1
position: 549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394-549:1:exon

bcCo53_RS06500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06500
old locus tag: bcCo53_001298
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTDIPLTHLNHKNIFIAKKNKNSIIYRANDTLEFTKYTLIVTNAIKKLNK
SIO_010081: bcCo53_RS06500
subclass of: SO_0000673
so part of: bcCo53_RS06500
location: 394..549
location: region:394-549:1
so has part: feature:394-549:1:exon

WP_246938432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:394-549:1:exon

bcCo53_RS06505
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06505
old locus tag: bcCo53_001299
so part of: sequence
location: 1635..2456
location: region:1635-2456:1
so has part: feature:1635-2456:1:exon
subclass of: SO_0000010

position:1635:1
position: 1635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2456:1
position: 2456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1635-2456:1:exon

bcCo53_RS06505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06505
old locus tag: bcCo53_001299
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRASP family complement regulator-acquiring lipoprotein
translation: MITNFFKKFLFISLLTTLGATENENSTVLIEQNLTELENIQNDNENTQHNHSLNLNEELSLQNDDRKEIKFIEAQKIGENADLIFNIIETATNNYNKITKENKKIETKDQYGMKNAFDKIILDNNKSLSQNTKKIYRETLYLSLDWDENLLKKFKEQLIFTIEEIKTIQLHTEIVKIGINIQIYSEEALKIICCDSKIKNNLYNKKLITEDLKNIKTQIDEIMTLRKQWQELINKNNYIGFFHNELLKEAKEVLNNIKTINTEIQTILKDKKS
SIO_010081: bcCo53_RS06505
subclass of: SO_0000673
so part of: bcCo53_RS06505
location: 1635..2456
location: region:1635-2456:1
so has part: feature:1635-2456:1:exon

WP_025408862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1635-2456:1:exon

bcCo53_RS06510
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06510
pseudo: true
so part of: sequence
location: complement(2708..>2856)
location: region:2708-2856:-1
so has part: feature:2708-2856:-1:exon
subclass of: SO_0000010

position:2708:-1
position: 2708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2856:-1
position: 2856
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2708-2856:-1:exon

bcCo53_RS06510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539535.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1640 domain-containing protein
SIO_010081: bcCo53_RS06510
subclass of: SO_0000673
so part of: bcCo53_RS06510
location: complement(2708..>2856)
location: region:2708-2856:-1
so has part: feature:2708-2856:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2708-2856:-1:exon

bcCo53_RS06515
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06515
old locus tag: bcCo53_001300
so part of: sequence
location: complement(3297..4481)
location: region:3297-4481:-1
so has part: feature:3297-4481:-1:exon
subclass of: SO_0000010

position:3297:-1
position: 3297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4481:-1
position: 4481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3297-4481:-1:exon

bcCo53_RS06515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06515
old locus tag: bcCo53_001300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539708.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MIECKHQRYYFCSLFLSEFARTLPHAVLTIILINKGLQLRDISIVQMFYMLAIIFFELPSGVISDIFDRKSVYLSSIFLSMIAYFFIFQTSSFIILCIAWFIYGISSAFNTGTIDISFTHIYQSNAQKLKSFILSMKIILNIGAILGGYAGSILFLYVDTKIYLLSLFLYLASSLITIFFISSDKNTDYNKEDLRFYLKQFRNDIIALLRSKILIELFILISSIQFFFQPFYLYWQAIFIDKNVPLSVFGIIYILFRLSNIIGAWVFKKIKHSKYDSYVILGIIFLLSVLIKMVSHIYIFIVIMIFLVVLVSLYSNNLEFFLRKNIDSKVLGTISSINSTISRLFSFLVLLACSVLTTFISIINTFILLMFIFCVMSILVIYKFMHNKRDKVNT
SIO_010081: bcCo53_RS06515
subclass of: SO_0000673
so part of: bcCo53_RS06515
location: complement(3297..4481)
location: region:3297-4481:-1
so has part: feature:3297-4481:-1:exon

WP_025408861.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3297-4481:-1:exon

bcCo53_RS06520
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06520
old locus tag: bcCo53_001301
so part of: sequence
location: complement(4478..5521)
location: region:4478-5521:-1
so has part: feature:4478-5521:-1:exon
subclass of: SO_0000010

position:4478:-1
position: 4478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5521:-1
position: 5521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4478-5521:-1:exon

bcCo53_RS06520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06520
old locus tag: bcCo53_001301
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683317.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ThiF family adenylyltransferase
translation: MTYIKNPTSFFNKSTSGNLVNLGQFQIEVDDSLFEHLLDIAIFAQDQKTYEELLTFATENNINCTTIKLSLDNILIPFYTNAHLQNDIYLKNKYFLDLLLKQPKNFNLEKKHIIIVGCGGIGNFMTYALSTLGLGFITFIDEDKIEESNLNRQFLFDYDSIGTHKVDVAEKRVKSLNKIIEAQKYKQKVSTKLLKSILCNSKIKPSLIVLSADDDYCLPLVNEFCIGHSVPFINVGYLNDFSVIGPFYIPNISSCPYCTDIGIVKTSSSSIIEDKLILANKDYQAPSFFTNNAIASSMAIIDIILYFGGEYESINSLNRRIGISNHDFSFHFIDIKRNEFCNCNRNL
SIO_010081: bcCo53_RS06520
subclass of: SO_0000673
so part of: bcCo53_RS06520
location: complement(4478..5521)
location: region:4478-5521:-1
so has part: feature:4478-5521:-1:exon

WP_025408860.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4478-5521:-1:exon

bcCo53_RS06525
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06525
old locus tag: bcCo53_001302
so part of: sequence
location: 6731..7846
location: region:6731-7846:1
so has part: feature:6731-7846:1:exon
subclass of: SO_0000010

position:6731:1
position: 6731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7846:1
position: 7846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6731-7846:1:exon

bcCo53_RS06525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06525
old locus tag: bcCo53_001302
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537763.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MESTKKTTNKYQHKLIVLISTINYMNLMFKKYTQNYILYYFNNNMKKNGYKPAKIKTLQNYLYKLEKVFKVTMNYHRHLGVNMGTEIHYTLKYSKKECYHIINKYFKEKKDERHRKRVNAYIEKTFIKNSNVEKWECYNNNYNKIEEKQKDVKSIEKLQIKKYARKCNFKSNTFFSILNLELEKNAIIEILKAFKKTEDFFTKDMYKKKISATPKTNRLKNKQQKLKKILNETKINLESEGYNNTQLKIQIQNVYEKYKYKPHFIVENYKYNDLEKVIEKLKKSVKLIKETTKDNENNIKNNMFSILLDQLKNKADMSVLIPTLKDYLRKKDKLEYNKLFSNYYYYELLKLINNYYYLSTSKGFEKTSVKD
SIO_010081: bcCo53_RS06525
subclass of: SO_0000673
so part of: bcCo53_RS06525
location: 6731..7846
location: region:6731-7846:1
so has part: feature:6731-7846:1:exon

WP_028328244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6731-7846:1:exon

bcCo53_RS06530
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06530
old locus tag: bcCo53_001303
so part of: sequence
location: 7848..8408
location: region:7848-8408:1
so has part: feature:7848-8408:1:exon
subclass of: SO_0000010

position:7848:1
position: 7848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8408:1
position: 8408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7848-8408:1:exon

bcCo53_RS06530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06530
old locus tag: bcCo53_001303
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539540.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKNLLERLKKKEWELKGKREKPIFVKIESKNNKTLYHTKIMNDLYISEVNKNQRNKFFISFRGLFNQEKIESFHLFALRDDDKFLGIFYGYRKPIKNVVTKYEENGIIKTSTFSKAYYIEFRFKKGSVFCYLLGISYLLRREKSHKKYYDSLVKTLLNLENQIYNFYDKKLPDGGIITKWIEKNLQ
SIO_010081: bcCo53_RS06530
subclass of: SO_0000673
so part of: bcCo53_RS06530
location: 7848..8408
location: region:7848-8408:1
so has part: feature:7848-8408:1:exon

WP_025408857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7848-8408:1:exon

bcCo53_RS06535
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06535
old locus tag: bcCo53_001304
so part of: sequence
location: 8384..9145
location: region:8384-9145:1
so has part: feature:8384-9145:1:exon
subclass of: SO_0000010

position:8384:1
position: 8384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9145:1
position: 9145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8384-9145:1:exon

bcCo53_RS06535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06535
old locus tag: bcCo53_001304
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696680.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKKPTIITIASIKGGVGKSTSSIILSTLLSQKYKVLLIDMDTQASTTSYYFNAIVEQNKFNIVSKNIYRVLKGTLNINKAIATIDKNLDLIPSYLSLHLFNKEAINFKELKLNEALNFLDIKYDYVILDTNPSLDFTLTNALVVSNSILIPMTAEKWAVESLQILEFYIRELKLKIPTFIFITKFKRNNSHKFLLENLQLKKNFLGFISEREDLNKKIAENNIFDFKRDYMKEYQSLLDLLLEKTEFKNEI
SIO_010081: bcCo53_RS06535
subclass of: SO_0000673
so part of: bcCo53_RS06535
location: 8384..9145
location: region:8384-9145:1
so has part: feature:8384-9145:1:exon

WP_025408856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8384-9145:1:exon

bcCo53_RS06540
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06540
old locus tag: bcCo53_001305
so part of: sequence
location: 9220..9756
location: region:9220-9756:1
so has part: feature:9220-9756:1:exon
subclass of: SO_0000010

position:9220:1
position: 9220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9756:1
position: 9756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9220-9756:1:exon

bcCo53_RS06540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06540
old locus tag: bcCo53_001305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696733.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MNIKINNRILVNEEEQDDVMNYYNSLKEKLKENFKREIHYKVEAIKILKEIKDNEYYKLDNYNSFESFVKQYKVAKTQAYAYLKLANALQNGILEEGYIIENGIHNSLVLIENKKNKTMKKSRQKPIRSLRFQFENQESYDFYKKNAKFTSFLMDVLFREKKDLLEEFMKKYKNLKCN
SIO_010081: bcCo53_RS06540
subclass of: SO_0000673
so part of: bcCo53_RS06540
location: 9220..9756
location: region:9220-9756:1
so has part: feature:9220-9756:1:exon

WP_025408855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9220-9756:1:exon

bcCo53_RS06545
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06545
old locus tag: bcCo53_001306
so part of: sequence
location: 10473..11513
location: region:10473-11513:1
so has part: feature:10473-11513:1:exon
subclass of: SO_0000010

position:10473:1
position: 10473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11513:1
position: 11513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10473-11513:1:exon

bcCo53_RS06545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06545
old locus tag: bcCo53_001306
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIKVKSICVTLFISLFLACNNGIEELEKRNTFLSSLANLGNDFLSVFTSFGDTLGGVLGFNAETKKSDVGKYFKNIENNLTTTKTKLEKIVDDMKNENNPNAIGVETEVKKLISEKLNKIIEGAKTISVAIGDASELIANVATGTAGGTAGGEVDNLVKGMKSIVEVVLKEGKHDAGTEKKADVLGARNGNAEGEAGKLFASDQAGSDASNAKKAAADAAKAVGAITGADILQAMVKAGGDAAKLASGASAPDAKKDAVIAGGIALRAMAKNGKFANRSDANEYAPEVKGVVISAVTKVLDTLTIAIRKTVDEGLKTVKEAMKINSDVTPVTTGAGAVTK
SIO_010081: bcCo53_RS06545
subclass of: SO_0000673
so part of: bcCo53_RS06545
location: 10473..11513
location: region:10473-11513:1
so has part: feature:10473-11513:1:exon

WP_025408854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10473-11513:1:exon

bcCo53_RS06550
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06550
old locus tag: bcCo53_001307
pseudo: true
so part of: sequence
location: <11622..12161
location: region:11622-12161:1
so has part: feature:11622-12161:1:exon
subclass of: SO_0000010

position:11622:1
position: 11622
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12161:1
position: 12161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11622-12161:1:exon

bcCo53_RS06550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06550
old locus tag: bcCo53_001307
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539553.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bcCo53_RS06550
subclass of: SO_0000673
so part of: bcCo53_RS06550
location: <11622..12161
location: region:11622-12161:1
so has part: feature:11622-12161:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11622-12161:1:exon

bcCo53_RS06555
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06555
old locus tag: bcCo53_001308
so part of: sequence
location: 12287..13228
location: region:12287-13228:1
so has part: feature:12287-13228:1:exon
subclass of: SO_0000010

position:12287:1
position: 12287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13228:1
position: 13228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12287-13228:1:exon

bcCo53_RS06555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06555
old locus tag: bcCo53_001308
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MSNLRQGFLDVFASFGKMFEDTLGFPAVKSSDPKSKVGEHFENIGKRLQSTKDKLDGLAKEISSTPHADTKGVETVISSSGEVLTKLIEAVTKLASVTKKGSANIGDNNNSKAVATPSADVEAIIKEVNAIVETATNSGIKIDTGKEGAAVPSSAATHAPTVLAKSNAQASAGAGPALAAEVVKADPWAMIHKIQKAKIATNPISLNASNDNGAGELATGTKNGDDAGAKTNADLAAAVALKAMTQGGQFNAANDAEAVKGAAAGAANKVIGVLEEIIRRTVVSNLDKIGKALKGIKYSETIGEATEVGTATK
SIO_010081: bcCo53_RS06555
subclass of: SO_0000673
so part of: bcCo53_RS06555
location: 12287..13228
location: region:12287-13228:1
so has part: feature:12287-13228:1:exon

WP_281171781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12287-13228:1:exon

bcCo53_RS06560
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06560
old locus tag: bcCo53_001309
so part of: sequence
location: 13362..14420
location: region:13362-14420:1
so has part: feature:13362-14420:1:exon
subclass of: SO_0000010

position:13362:1
position: 13362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14420:1
position: 14420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13362-14420:1:exon

bcCo53_RS06560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06560
old locus tag: bcCo53_001309
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKNRIRSICATLFISLFLSCNNSGEELEKLQKQNTFLSSLANLGNDFLNIFTSFGEMTGTVLGFNKDTKKSDVGKYFKNIEDNLTTTKTKLEKLVADMKDQGNPNAAATETAINKLVKETLDRIIEGAKTASEAIGPDAKDLIGNVAAVNTEKKGSAGDISKLDKLVDGIKNIVEVVLGNLGSPDAGDKSKASDSASNRNGTDGALKLFDGSSNGANTEAKEAANDASKAVGAITGADILKAMIVTSGDAIKLAKINGTTVSGINNYQDAIIAGAIALRAMASGGKFANGASGHDVTNAVKGTALSAVTKALDTLTIAIRRTIDEGLKEVKKAMNINANDMSVTTEFGTATK
SIO_010081: bcCo53_RS06560
subclass of: SO_0000673
so part of: bcCo53_RS06560
location: 13362..14420
location: region:13362-14420:1
so has part: feature:13362-14420:1:exon

WP_206742076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13362-14420:1:exon

bcCo53_RS06565
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06565
old locus tag: bcCo53_001310
pseudo: true
so part of: sequence
location: 14550..15665
location: region:14550-15665:1
so has part: feature:14550-15665:1:exon
subclass of: SO_0000010

position:14550:1
position: 14550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15665:1
position: 15665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14550-15665:1:exon

bcCo53_RS06565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06565
old locus tag: bcCo53_001310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539606.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bcCo53_RS06565
subclass of: SO_0000673
so part of: bcCo53_RS06565
location: 14550..15665
location: region:14550-15665:1
so has part: feature:14550-15665:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14550-15665:1:exon

bcCo53_RS06570
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06570
old locus tag: bcCo53_001311
so part of: sequence
location: 15791..16864
location: region:15791-16864:1
so has part: feature:15791-16864:1:exon
subclass of: SO_0000010

position:15791:1
position: 15791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16864:1
position: 16864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15791-16864:1:exon

bcCo53_RS06570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06570
old locus tag: bcCo53_001311
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539529.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIRLKSICATLFISLFLSCNNSGESAEAEKRLTDVLMDVSRSAENAFYSFISLISDTLGLKVTKDTAKNEVGNYYKKLAEGIDQAIKELLLIASKTVQSDNQSGKEENLSNLNKAIEKAKQMFEKLKGCIASLESIGDNSKVGEVGSTSQQGEAANESALRKAYDALKGIVDIAMETGVKELKKSNLVLDQRSIGGSGNPENGAKVLAVGAAGADSGPGAAAIVAAVIGEEILESIVKSEGKAVTISVAATADTTPLEFAMGGTNTNLNKTVAKAADVSGGIALRSLVKGGKLASNTSNEDKVTVQAVGIDAVNKLLGALEDIIRKTINKILEKVKTEVDEVRNPKSAIQQ
SIO_010081: bcCo53_RS06570
subclass of: SO_0000673
so part of: bcCo53_RS06570
location: 15791..16864
location: region:15791-16864:1
so has part: feature:15791-16864:1:exon

WP_038365068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15791-16864:1:exon

bcCo53_RS06575
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06575
old locus tag: bcCo53_001312
so part of: sequence
location: 16997..18037
location: region:16997-18037:1
so has part: feature:16997-18037:1:exon
subclass of: SO_0000010

position:16997:1
position: 16997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18037:1
position: 18037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16997-18037:1:exon

bcCo53_RS06575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06575
old locus tag: bcCo53_001312
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683366.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIRIRSICATLFISLFLSCNNGIEELQKQRDSILSISNLRQQFLDVFSSFSDMFTDAFGITADTTKKQFGEHLGKVGDAVQAVKGKLENIKADENFDLIKDKAESIIAKAIETLGKIIDGANKIKQATASASGKIANSDSAGDAVQAETESVKGLVEGIVMFCEAAKGVGMHPKGNANKPIADSQEVGNLFNQTSNVGSDAKALIGANRAVHTASGADILAAIEAAKDITSKVAGNINAATSAYDVAIANKSNGNLTTIKTNASAIAAGLALRAMAKQGKLATVATHAPGEAVNAVLVGVVGKTLNEIVSTIKRTVDKCLKDVSECIKENSTSEVKTKSK
SIO_010081: bcCo53_RS06575
subclass of: SO_0000673
so part of: bcCo53_RS06575
location: 16997..18037
location: region:16997-18037:1
so has part: feature:16997-18037:1:exon

WP_025409061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16997-18037:1:exon

bcCo53_RS06580
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06580
old locus tag: bcCo53_001313
pseudo: true
so part of: sequence
location: <18434..>19034
location: region:18434-19034:1
so has part: feature:18434-19034:1:exon
subclass of: SO_0000010

position:18434:1
position: 18434
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:19034:1
position: 19034
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18434-19034:1:exon

bcCo53_RS06580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06580
old locus tag: bcCo53_001313
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696751.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bcCo53_RS06580
subclass of: SO_0000673
so part of: bcCo53_RS06580
location: <18434..>19034
location: region:18434-19034:1
so has part: feature:18434-19034:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18434-19034:1:exon

bcCo53_RS06585
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06585
old locus tag: bcCo53_001314
so part of: sequence
location: 19064..19528
location: region:19064-19528:1
so has part: feature:19064-19528:1:exon
subclass of: SO_0000010

position:19064:1
position: 19064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19528:1
position: 19528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19064-19528:1:exon

bcCo53_RS06585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06585
old locus tag: bcCo53_001314
inference: COORDINATES: protein motif:HMM:NF014468.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MLLKNTDSSKPKKEECRFRRNDVETRLTCEHKISKNYLKQIKEHSNNDATYINALINLETAIDEYQGEYYIEDILEHFLKQFGNRYKYKIWMMMRRSDGVISDYALIWEGKFRGIGIPISTRVIVPLKRLMERIYELELKNHLLLLRRKGLMSS
SIO_010081: bcCo53_RS06585
subclass of: SO_0000673
so part of: bcCo53_RS06585
location: 19064..19528
location: region:19064-19528:1
so has part: feature:19064-19528:1:exon

WP_246938434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19064-19528:1:exon

bcCo53_RS06590
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06590
old locus tag: bcCo53_001315
so part of: sequence
location: 19624..19959
location: region:19624-19959:1
so has part: feature:19624-19959:1:exon
subclass of: SO_0000010

position:19624:1
position: 19624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19959:1
position: 19959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19624-19959:1:exon

bcCo53_RS06590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06590
old locus tag: bcCo53_001315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLFERESKEREERLRIAREEELNLKKKARESLLASLERSKARCVELGISNNGKDNMICASSNEDVVKFAIRDDFGGFKTTKGMSMLNLGIMIEDIGQNENLKEKESKWDLI
SIO_010081: bcCo53_RS06590
subclass of: SO_0000673
so part of: bcCo53_RS06590
location: 19624..19959
location: region:19624-19959:1
so has part: feature:19624-19959:1:exon

WP_025409049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19624-19959:1:exon

bcCo53_RS06595
type: Gene
subclass of: SO_0000704
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06595
so part of: sequence
location: 20157..20753
location: region:20157-20753:1
so has part: feature:20157-20753:1:exon
subclass of: SO_0000010

position:20157:1
position: 20157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20753:1
position: 20753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20157-20753:1:exon

bcCo53_RS06595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGLAQPIVTQQMVVSELTKAGIDRDIAIDLSYRYYRNELTYKDIEYLENTFNLKLEKVEANLKSDIKDLDNKIENIRNELKSDIRDLDNKVENIRNELKSDIRDLDNKVENIRNELKSDIKDLDNKIDNVENNLNLKIESVRNELKSDITFVSNEISLVRKDIEINKMEFKSTLRLHNWMFGTIITICLGILLTLIFK
SIO_010081: bcCo53_RS06595
subclass of: SO_0000673
so part of: bcCo53_RS06595
location: 20157..20753
location: region:20157-20753:1
so has part: feature:20157-20753:1:exon

WP_025409050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20157-20753:1:exon

bcCo53_RS06600
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06600
old locus tag: bcCo53_001317
so part of: sequence
location: complement(20936..21673)
location: region:20936-21673:-1
so has part: feature:20936-21673:-1:exon
subclass of: SO_0000010

position:20936:-1
position: 20936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21673:-1
position: 21673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20936-21673:-1:exon

bcCo53_RS06600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06600
old locus tag: bcCo53_001317
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKILLLLAAIINLFAISEEEYYKQDKYRYFKRKLIRVKDWKTNFNNLKNLGPYFTEAIENIKSTPDKTLSRNFQGAFSTSLCGTMSEDIDIVPKEHKPLFEKSYKFIKTLKHKNPDQAAYILYEIGDLDEMFTNTHEEIGTFYYIMKDTTLKDNNQYEHAYKKLNNIYNKIRQEYLSTINILEHNDIENNFDKFMLKFSELHKLVTHIYFNIRKLVIHARNHKTINHNYLDNIYNTDIHTLNTT
SIO_010081: bcCo53_RS06600
subclass of: SO_0000673
so part of: bcCo53_RS06600
location: complement(20936..21673)
location: region:20936-21673:-1
so has part: feature:20936-21673:-1:exon

WP_025409051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20936-21673:-1:exon

bcCo53_RS06605
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06605
old locus tag: bcCo53_001318
so part of: sequence
location: complement(21758..22474)
location: region:21758-22474:-1
so has part: feature:21758-22474:-1:exon
subclass of: SO_0000010

position:21758:-1
position: 21758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22474:-1
position: 22474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21758-22474:-1:exon

bcCo53_RS06605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06605
old locus tag: bcCo53_001318
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKLLLFLTMIINLSAISEEKRKEYEKRDQYTEATRNLIRVKDWKTNFNNLNKLGPYFMKEIESIKSLFNLSEKDFSIFCTPYDTICPPLSTNHTFIKHQYTIKEYYSFINTLKHKNPNQAAYLIYEIYDLETIFGITQETIYSFNENKPELAITYNPTYKKTFETLKNIHYKAQNDFDLATNILKQNYTDNNFDTFMLKFIEIHKLATHAYFNLHNLLYKCIYSRSTEEKNKYCNYN
SIO_010081: bcCo53_RS06605
subclass of: SO_0000673
so part of: bcCo53_RS06605
location: complement(21758..22474)
location: region:21758-22474:-1
so has part: feature:21758-22474:-1:exon

WP_025409052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21758-22474:-1:exon