Borrelia coriaceae strain Co53 plasmid lp20, complete sequence.
type: Entry
definition: Borrelia coriaceae strain Co53 plasmid lp20, complete sequence.
sequence version: NZ_CP075084.1
sequence date: 2023-05-09
sequence: sequence
division: CON
label: NZ_CP075084.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18441555
keyword: RefSeq
source: Borrelia coriaceae
organism: Borrelia coriaceae
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075084.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 141.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:11:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,761\nCDSs (total) :: 1,723\nGenes (coding) :: 1,660\nCDSs (with protein) :: 1,660\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 31 of 63\nPseudo Genes (incomplete) :: 29 of 63\nPseudo Genes (internal stop) :: 16 of 63\nPseudo Genes (multiple problems) :: 12 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20414
topology: linear
so has quality: SO_0000987
location: 1..20414
location: region:1-20414:1
RO_0002162: 144

NZ_CP075084
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18441555
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kneubehl, A.R.
author: Lopez, J.
journal: Submitted (15-APR-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20414:1
position: 20414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20414:1:source
so part of: sequence
organism: Borrelia coriaceae
mol type: genomic DNA
strain: Co53
isolation source: tick tissue
host: Ornithodoros coriaceus
type material: type strain of Borrelia coriaceae
plasmid: lp20
country: USA: California
collection date: 1985

144
type: Taxonomy
SIO_000068: taxonomy

bcCo53_RS06400
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06400
old locus tag: bcCo53_001278
so part of: sequence
location: 162..533
location: region:162-533:1
so has part: feature:162-533:1:exon
subclass of: SO_0000010

position:162:1
position: 162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:533:1
position: 533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162-533:1:exon

bcCo53_RS06400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06400
old locus tag: bcCo53_001278
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMSMLTSCELIADSISNQNEISSLKTLTTVATNQEITNKHDISLENLTNKIKQAIQNIDTNNPSTNEIIEIFKNFSIVKFEPNNKRNEIGTHFKKTAEGLTVLKNELKEKLTIMIISLQTLKM
SIO_010081: bcCo53_RS06400
subclass of: SO_0000673
so part of: bcCo53_RS06400
location: 162..533
location: region:162-533:1
so has part: feature:162-533:1:exon

WP_246938426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:162-533:1:exon

bcCo53_RS06405
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06405
old locus tag: bcCo53_001279
so part of: sequence
location: 542..1192
location: region:542-1192:1
so has part: feature:542-1192:1:exon
subclass of: SO_0000010

position:542:1
position: 542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1192:1
position: 1192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:542-1192:1:exon

bcCo53_RS06405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06405
old locus tag: bcCo53_001279
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKKLAETTDNNNIEIGAINNTGTKAAIISNKKNVEDIISKIKDIIKIAEEAQINIEAKTNNNITGNNITSIAAINGGAGADLKGGGANEEDVSKLIDIISQIDALAMLNKIAHATTNVNNGYINETNNDAGQLIVGRTLNTNGVGAKSNADFAAAIALKAMSKDGKFAGHKNGNNTEYAKNIQKAAATAISKVVTAIDTIIIDILNAELNKIKTKS
SIO_010081: bcCo53_RS06405
subclass of: SO_0000673
so part of: bcCo53_RS06405
location: 542..1192
location: region:542-1192:1
so has part: feature:542-1192:1:exon

WP_246938431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:542-1192:1:exon

bcCo53_RS06410
type: Gene
subclass of: SO_0000704
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06410
so part of: sequence
location: complement(1464..1781)
location: region:1464-1781:-1
so has part: feature:1464-1781:-1:exon
subclass of: SO_0000010

position:1464:-1
position: 1464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1781:-1
position: 1781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1464-1781:-1:exon

bcCo53_RS06410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683343.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MDLQFQQIKAGIDRDIAIDLSYRYYRNELTYKDIEYLENTFNLKLEKVESNLKSDIKDLDNKIDNVRKDIEINKMEFRSTLKVHNWMLGTIITICVGILLTLIFK
SIO_010081: bcCo53_RS06410
subclass of: SO_0000673
so part of: bcCo53_RS06410
location: complement(1464..1781)
location: region:1464-1781:-1
so has part: feature:1464-1781:-1:exon

WP_028328287.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1464-1781:-1:exon

bcCo53_RS06415
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06415
old locus tag: bcCo53_001281
so part of: sequence
location: complement(2000..2860)
location: region:2000-2860:-1
so has part: feature:2000-2860:-1:exon
subclass of: SO_0000010

position:2000:-1
position: 2000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2860:-1
position: 2860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2000-2860:-1:exon

bcCo53_RS06415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06415
old locus tag: bcCo53_001281
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537773.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MRKKLFIFILLIIGLVSCDVNSKLLDKGETRDAVGAVDNGVQGDERIKNIISNGDFSEEVNKAPVEEVVEAGPVIKDEKEELIAAIKKDVNIGMGLINSDKKEVEDESQYGMKEVVFKAVTDGVTNKALDDDLNKDLRRLFYSSLLYDKERIKEFAEILNKIGTDGQNKGTWLIDIMDSGIVYLQFNFERVISKLDKNKDKLDQLSLDDLREIKSKLEEIQLQRLTWKKSVDAIIVAYKAKKEGIDSDSKRLISYISERYKNLITVEIPGIQGVSDKIISLIDKIK
SIO_010081: bcCo53_RS06415
subclass of: SO_0000673
so part of: bcCo53_RS06415
location: complement(2000..2860)
location: region:2000-2860:-1
so has part: feature:2000-2860:-1:exon

WP_025408971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2000-2860:-1:exon

bcCo53_RS06420
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06420
old locus tag: bcCo53_001282
pseudo: true
so part of: sequence
location: complement(3460..>4017)
location: region:3460-4017:-1
so has part: feature:3460-4017:-1:exon
subclass of: SO_0000010

position:3460:-1
position: 3460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4017:-1
position: 4017
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3460-4017:-1:exon

bcCo53_RS06420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06420
old locus tag: bcCo53_001282
inference: COORDINATES: protein motif:HMM:NF033721.0
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: P12 family lipoprotein
SIO_010081: bcCo53_RS06420
subclass of: SO_0000673
so part of: bcCo53_RS06420
location: complement(3460..>4017)
location: region:3460-4017:-1
so has part: feature:3460-4017:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3460-4017:-1:exon

bcCo53_RS06425
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06425
old locus tag: bcCo53_001283
so part of: sequence
location: complement(4050..4397)
location: region:4050-4397:-1
so has part: feature:4050-4397:-1:exon
subclass of: SO_0000010

position:4050:-1
position: 4050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4397:-1
position: 4397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4050-4397:-1:exon

bcCo53_RS06425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06425
old locus tag: bcCo53_001283
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKNILVICMLILLCFLSCDINALNELLGKAREKFLEENNKVENLKSIEENQEDKEKQVGIVKRIEKGVQQVVQAVPVVPVGGLNNEVFEKPVNDNNSAIRMYSQEEKIEIKKRI
SIO_010081: bcCo53_RS06425
subclass of: SO_0000673
so part of: bcCo53_RS06425
location: complement(4050..4397)
location: region:4050-4397:-1
so has part: feature:4050-4397:-1:exon

WP_246938427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4050-4397:-1:exon

bcCo53_RS06430
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06430
old locus tag: bcCo53_001284
so part of: sequence
location: complement(4811..4975)
location: region:4811-4975:-1
so has part: feature:4811-4975:-1:exon
subclass of: SO_0000010

position:4811:-1
position: 4811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4975:-1
position: 4975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4811-4975:-1:exon

bcCo53_RS06430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06430
old locus tag: bcCo53_001284
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKINIKNIRLRSICTRLFIFLFLSCNNSGEELENLKNQNTFLSSLANLDNDFFF
SIO_010081: bcCo53_RS06430
subclass of: SO_0000673
so part of: bcCo53_RS06430
location: complement(4811..4975)
location: region:4811-4975:-1
so has part: feature:4811-4975:-1:exon

WP_155806450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4811-4975:-1:exon

bcCo53_RS06435
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06435
old locus tag: bcCo53_001285
so part of: sequence
location: complement(5120..6157)
location: region:5120-6157:-1
so has part: feature:5120-6157:-1:exon
subclass of: SO_0000010

position:5120:-1
position: 5120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6157:-1
position: 6157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5120-6157:-1:exon

bcCo53_RS06435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06435
old locus tag: bcCo53_001285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633355.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIKVKSICATLFIFLFLSCNSGIEELENKNNFFSSLANLRQDFLDVFTYFGDIVTDSLGIKAETKKDDIGGYFSKIESTMKNVQDKLKNVAEKYGHYPKVKEKVAQFIEQLVKIEEGAKEASKVEEGAELLGNMEAKNSGGKPGEVDKLIKAIQTIVNVVLAKGNPEAGNNLKAKDGQTPRANNNDSAGNLFANNQAGTAHANAKEAATDAAKAVGAVTGADILKAIVKEGGAAATLAKNNTTHDSVNAVADANDAVVAGAIALRAMTKNGKFAGNTSAENAVAIVKNAAASAVNKTLSTLVIAIRNTVDTALKAISEALAAIKQGDMSADTSESGNTK
SIO_010081: bcCo53_RS06435
subclass of: SO_0000673
so part of: bcCo53_RS06435
location: complement(5120..6157)
location: region:5120-6157:-1
so has part: feature:5120-6157:-1:exon

WP_025408969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5120-6157:-1:exon

bcCo53_RS06440
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06440
old locus tag: bcCo53_001286
so part of: sequence
location: complement(6293..7330)
location: region:6293-7330:-1
so has part: feature:6293-7330:-1:exon
subclass of: SO_0000010

position:6293:-1
position: 6293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7330:-1
position: 7330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6293-7330:-1:exon

bcCo53_RS06440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06440
old locus tag: bcCo53_001286
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNISIKSICATLFISLFLSCNNGIEELQREKQFYSSLANLGNDFLSVFTSFGDSLGGVLGFNPNTKKSEVGNYFKNIQETVQGVKTGLNNIVTDMKNQENPNASTVEAAVKALNEKLDKIIEGAKTVSEAIGTDATAPIGNVAASAAAGAVGIGVDKLVQGIKSIVGVVLKDKGKADAGDNKKAEDGSTERNSDGSVKLFANASAGSDDKKAAADAAKAIGAVTGADILQAMVKDNGDAAKLAKNSSSGVTAPKDAEVAGGIALRAMAKEGKFANGSSASEAKKILDGAVTSALTKALDTLTIAIRKTIDEGLKEVKKVMNINANIDPVTSDDRGIATSN
SIO_010081: bcCo53_RS06440
subclass of: SO_0000673
so part of: bcCo53_RS06440
location: complement(6293..7330)
location: region:6293-7330:-1
so has part: feature:6293-7330:-1:exon

WP_025408968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6293-7330:-1:exon

bcCo53_RS06445
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06445
old locus tag: bcCo53_001287
so part of: sequence
location: complement(7457..8515)
location: region:7457-8515:-1
so has part: feature:7457-8515:-1:exon
subclass of: SO_0000010

position:7457:-1
position: 7457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8515:-1
position: 8515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7457-8515:-1:exon

bcCo53_RS06445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06445
old locus tag: bcCo53_001287
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539514.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIRLKSICATLFISLFLACNNGIEELEKRNTFLSSLANLGNDFLTIFTSFGDSLGGVLAFNAETKKSDVGKYFKNIEKGLTTTKTNLEKIVADMKDQGHPNATAVESAVSKLVNDTLNNIINGAKTVSDAIGITDAELLGNGAIYTSAAGSKGEVEKLVNGIKAIVDVVLDTKEGNPEAGDVKKATDGSGNRNGGNNQDGEAGKLFNGTNAGTNANAKKSAADAAKAVGAVTGADILKAMSKSDDSAKLAAGNDVSDAKQDAVIAGAMALRAMAKGGKFAGSSDNDSGAVAPIVKGAAVSAVNKALNTLTIAIRKTIDAGLKEVKKAMNINANDVSVTTESGTATK
SIO_010081: bcCo53_RS06445
subclass of: SO_0000673
so part of: bcCo53_RS06445
location: complement(7457..8515)
location: region:7457-8515:-1
so has part: feature:7457-8515:-1:exon

WP_038365149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7457-8515:-1:exon

bcCo53_RS06450
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06450
old locus tag: bcCo53_001288
so part of: sequence
location: complement(8661..9749)
location: region:8661-9749:-1
so has part: feature:8661-9749:-1:exon
subclass of: SO_0000010

position:8661:-1
position: 8661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9749:-1
position: 9749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8661-9749:-1:exon

bcCo53_RS06450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06450
old locus tag: bcCo53_001288
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIRLKSICATLFISLFLACNNGIEELEKRNTFLSSLANLGNDFLDSFTSFGDTLGGVLGFNTKTPKSEVGKYFKSVHDTVSSTKTALEKIVADMKDKGNPNAEAVSASVKTFIDDKLSKIIEGAEIASGAIGNDASEPIANVAKGGSNTDGAGVKGKDIENLVKGIKSIVDIVLKDKGSADAGTGKKADALASDRDANSSDVVKLFGSSGNQGAIAANADKAAADASKAVGAVTGADILQAMVKENGESAKLAEHKVDTAVTGMVSKNDATIAGAIALRAMAKGGKFANDNSTANIDVANTVKGAAVSAVTKVLNTLTIAIRKTIDAGLKEVKEAMKINPEATSVTSDKNIPESKK
SIO_010081: bcCo53_RS06450
subclass of: SO_0000673
so part of: bcCo53_RS06450
location: complement(8661..9749)
location: region:8661-9749:-1
so has part: feature:8661-9749:-1:exon

WP_246938428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8661-9749:-1:exon

bcCo53_RS06455
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06455
old locus tag: bcCo53_001289
so part of: sequence
location: complement(9895..10983)
location: region:9895-10983:-1
so has part: feature:9895-10983:-1:exon
subclass of: SO_0000010

position:9895:-1
position: 9895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10983:-1
position: 10983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9895-10983:-1:exon

bcCo53_RS06455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06455
old locus tag: bcCo53_001289
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683335.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIKVKRICATLFISLFLSCNNGIEELEKRNTFLSSLANLGNDFLDSFTSFGDTLGGVLGFNTKTPKSEVGKYFKSVHDTVSSTKTALEKIVADMKDKGNPNAEAVSASVKTFIDDKLSKIIEGAEIASGAIGNDASEPIANVAKGGSNTDGAGVKGKDIENLVKGIKSIVDIVLKDKGSADAGTGKKADALASDRDANSSDVVKLFGSSGNQGAIAANADKAAADASKAVGAVTGADILQAMVKENGESAKLAEHKVDTAVTGMVSKNDATIAGAIALRAMAKGGKFANDNSTANIDVANTVKGAAVSAVTKVLNTLTIAIRKTIDAGLKEVKEAMKINPEATSVTSDKNIPESKK
SIO_010081: bcCo53_RS06455
subclass of: SO_0000673
so part of: bcCo53_RS06455
location: complement(9895..10983)
location: region:9895-10983:-1
so has part: feature:9895-10983:-1:exon

WP_246938429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9895-10983:-1:exon

bcCo53_RS06460
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06460
old locus tag: bcCo53_001290
so part of: sequence
location: complement(11103..12152)
location: region:11103-12152:-1
so has part: feature:11103-12152:-1:exon
subclass of: SO_0000010

position:11103:-1
position: 11103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12152:-1
position: 12152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11103-12152:-1:exon

bcCo53_RS06460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06460
old locus tag: bcCo53_001290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIKVRSICATLFISLFLACNNGIEELEKQRDSILSISNLRQGFLDVFTSFSDMVTDTLGINVDTKKEDIGKYFTNIETTMKKVKEKLNTLVAENGNYEKVKAVVDKFVADTLDKIAEGAKEAAKGAVGSDAIGSATAGQDAVPGEVASVNSLVKGIKTIVEVVLKKSEGDAGANKTKTSEQQTIGKLFAQGSGGSDGTEAEAAAANASIGAVTGADILQAILKSGDVSTNKQLNTVTSAAEIAVAQNSGTKTLSAVTKDAIIAAGIALRAMAKNGKFTAKNTEEKSAHAVNGAAVSAVNKTLSTLVIAIKNTVDSGLKAISEALAAVKQGDMSSETSESGATR
SIO_010081: bcCo53_RS06460
subclass of: SO_0000673
so part of: bcCo53_RS06460
location: complement(11103..12152)
location: region:11103-12152:-1
so has part: feature:11103-12152:-1:exon

WP_028328284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11103-12152:-1:exon

bcCo53_RS06465
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06465
old locus tag: bcCo53_001291
so part of: sequence
location: complement(12375..13037)
location: region:12375-13037:-1
so has part: feature:12375-13037:-1:exon
subclass of: SO_0000010

position:12375:-1
position: 12375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13037:-1
position: 13037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12375-13037:-1:exon

bcCo53_RS06465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06465
old locus tag: bcCo53_001291
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633323.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MKINIKNINIKSICAILFISLFFSCNNSGPELREGQAAMADGRVIDLTKVSKKIRDAIDFAAGVKEVNTLVKSIDELAKAIGSKIKNSDTLDTSNNNHNGSLIAGAFQVVLAIEFKLKELEKATETPDSIKAKVISAKDASRAFIEQIKKQHTNLGQEGATDVHAKSAILLTDGTKDQGVAELVKLNSAMAELLAATKKELETVMMELKEPSRTTSTQND
SIO_010081: bcCo53_RS06465
subclass of: SO_0000673
so part of: bcCo53_RS06465
location: complement(12375..13037)
location: region:12375-13037:-1
so has part: feature:12375-13037:-1:exon

WP_028328283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12375-13037:-1:exon

bcCo53_RS06470
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06470
old locus tag: bcCo53_001292
so part of: sequence
location: complement(13166..14203)
location: region:13166-14203:-1
so has part: feature:13166-14203:-1:exon
subclass of: SO_0000010

position:13166:-1
position: 13166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14203:-1
position: 14203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13166-14203:-1:exon

bcCo53_RS06470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06470
old locus tag: bcCo53_001292
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539552.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKINIKNIRVKSICATLFIFLFLSCNNGIEELQKQKDSILSISNLRQNFLDIFTSFGDMITDSLGINPDTKKSDIGKYFTDIATTIKTVKDKLQSEVVKNEHYSKVKEAVEKFIEKLTKIEEGSKGAAEGVKGDAISGATASSGQNAAPAKVESVNSLVKGIKTIVDVVIKKGEGNPAFTKTDDTELKSVGKLFSDTPGDATETIAAAASASIGAVTGADILQAIAGSEEAKDQPNIEDAKNAAEIAVTNKNSGTKTLNKANKDAVLVAGIALRAMAEGGKLAAKNDAKSSGAVNGVAASVVNKTLSTLIIAIRNTVDSGLKTISEALATVKQGDMSAETATSGQ
SIO_010081: bcCo53_RS06470
subclass of: SO_0000673
so part of: bcCo53_RS06470
location: complement(13166..14203)
location: region:13166-14203:-1
so has part: feature:13166-14203:-1:exon

WP_028328282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13166-14203:-1:exon

bcCo53_RS06475
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06475
so part of: sequence
location: complement(14331..14594)
location: region:14331-14594:-1
so has part: feature:14331-14594:-1:exon
subclass of: SO_0000010

position:14331:-1
position: 14331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14594:-1
position: 14594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14331-14594:-1:exon

bcCo53_RS06475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06475
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKTNTASAKDALIAGTLAVRGMAKDGKFATHSNGTDAKDEIKNAVASAIKMALNTLNLAIMKTINFDLKAIKDLIKVDSVISSNITK
SIO_010081: bcCo53_RS06475
subclass of: SO_0000673
so part of: bcCo53_RS06475
location: complement(14331..14594)
location: region:14331-14594:-1
so has part: feature:14331-14594:-1:exon

WP_281171783.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14331-14594:-1:exon

bcCo53_RS06480
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06480
pseudo: true
so part of: sequence
location: complement(<14616..15077)
location: region:14616-15077:-1
so has part: feature:14616-15077:-1:exon
subclass of: SO_0000010

position:14616:-1
position: 14616
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15077:-1
position: 15077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14616-15077:-1:exon

bcCo53_RS06480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06480
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: bcCo53_RS06480
subclass of: SO_0000673
so part of: bcCo53_RS06480
location: complement(<14616..15077)
location: region:14616-15077:-1
so has part: feature:14616-15077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14616-15077:-1:exon

bcCo53_RS06485
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06485
old locus tag: bcCo53_001295
so part of: sequence
location: complement(15471..16733)
location: region:15471-16733:-1
so has part: feature:15471-16733:-1:exon
subclass of: SO_0000010

position:15471:-1
position: 15471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16733:-1
position: 16733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15471-16733:-1:exon

bcCo53_RS06485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06485
old locus tag: bcCo53_001295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539624.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISKGNETRTHNIEFSIVESLRLNFEFLIRNIWLILFALFLFFFNVLHSHRGLASYNVGSNSKLYFTLPFTIIVIVVPSSILLYFLYLLRTRVTEGSVKSSIFAYLEKIAIFVLLVIGLITQSVSSWMSFESFFSLMFEDTIKDTVLSTQKSQIAKEEGIRKLLFDKDKIIEGEIASIDIKIKNNNDRIEFAKNNHLSLDYRYRTMKQDYMREIENASRENKELFNQRNEYLESLQDLRFKLSSLIERAAINNNKFKAANVLNGTSVVIARDDYLNIVFVYLLLLLLLLLSVCLDIFLAMVFCIIQNAYHKFYEQKLLHFAPLPTGSRINVKEKIKNHQILSSRKYKKPLQRVEEVLRFISSNLEDDKRTVKPLRKINKETNVSEYRIRQYLSDLMDRGLIIKEKQRLILNVNDTLKPII
SIO_010081: bcCo53_RS06485
subclass of: SO_0000673
so part of: bcCo53_RS06485
location: complement(15471..16733)
location: region:15471-16733:-1
so has part: feature:15471-16733:-1:exon

WP_246938430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15471-16733:-1:exon

bcCo53_RS06490
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS06490
old locus tag: bcCo53_001296
so part of: sequence
location: 17443..18996
location: region:17443-18996:1
so has part: feature:17443-18996:1:exon
subclass of: SO_0000010

position:17443:1
position: 17443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18996:1
position: 18996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17443-18996:1:exon

bcCo53_RS06490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS06490
old locus tag: bcCo53_001296
inference: COORDINATES: protein motif:HMM:NF014468.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MNSVTKDKKNFNSNNTKDQIKSILKSLVALNKDKTSADTKFIRVSQVRYQINRMLRRKLRLYKIYWIIAIKNAKYKKSCGVEEYSARDIYNIVIKLLRNDGQKTVCKRTIERDIKLLNEMGLLESKIIRFGENKGSMSFYKQNMQLAHLHKDIIFKYLLHLLKENLSDKKIVGNFDDSLEESNFNYTNLKKFGILSEIDEMNNESVMSHRVDPHAFNNKANISNNKNSKELLLKHTNSSKLKKEECRFKRNDVETRLICEHKISKNYLNQIKEYSNNDATYINALINLETAIDEYQSEYYIEDILEHFLKQFGNRYKYKIWMMMKRSDGVISDYALIWEGRFRDWYPNKYKSNCAVKETYGENLRIGIKKASVVKEKKAKEQLNVEELKEKEIEKAKEREEERKREADRLQKYLTGLFEREAKEREERLRKAREEELNLKKKARESMLVTLEKSKERCVGLDISNNNGMDKMIDAISNEDSMVKFAIRDEFGGFKTTKGMSMLNLGIMIKDVGQNEI
SIO_010081: bcCo53_RS06490
subclass of: SO_0000673
so part of: bcCo53_RS06490
location: 17443..18996
location: region:17443-18996:1
so has part: feature:17443-18996:1:exon

WP_025409015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17443-18996:1:exon

bcCo53_RS06495
type: Gene
subclass of: SO_0000704
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06495
old locus tag: bcCo53_001297
so part of: sequence
location: complement(19504..20064)
location: region:19504-20064:-1
so has part: feature:19504-20064:-1:exon
subclass of: SO_0000010

position:19504:-1
position: 19504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20064:-1
position: 20064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19504-20064:-1:exon

bcCo53_RS06495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
gene: bdr
locus tag: bcCo53_RS06495
old locus tag: bcCo53_001297
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MGLPQTIGITRQMVLNELIKAGINRDIADDLSYRYYRNELTHKDLEYLETNFNLKLEKVEALLQSEIQKIEASLQSEIKAVKTELDNKIDNKFNELDNKIDNKFNELDNKIDTVENNLNNKINIVENNLNVKIDTKFNELDNKIDKNKMELKSTLKLHNWMLGTLIGLCTGIFLTLIGIIYSFLIK
SIO_010081: bcCo53_RS06495
subclass of: SO_0000673
so part of: bcCo53_RS06495
location: complement(19504..20064)
location: region:19504-20064:-1
so has part: feature:19504-20064:-1:exon

WP_025409014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19504-20064:-1:exon