Borrelia coriaceae strain Co53 plasmid lp11, complete sequence.
type: Entry
definition: Borrelia coriaceae strain Co53 plasmid lp11, complete sequence.
sequence version: NZ_CP075082.1
sequence date: 2023-05-09
sequence: sequence
division: CON
label: NZ_CP075082.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18441555
keyword: RefSeq
source: Borrelia coriaceae
organism: Borrelia coriaceae
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075082.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 141.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:11:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,761\nCDSs (total) :: 1,723\nGenes (coding) :: 1,660\nCDSs (with protein) :: 1,660\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 31 of 63\nPseudo Genes (incomplete) :: 29 of 63\nPseudo Genes (internal stop) :: 16 of 63\nPseudo Genes (multiple problems) :: 12 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10596
topology: linear
so has quality: SO_0000987
location: 1..10596
location: region:1-10596:1
RO_0002162: 144

NZ_CP075082
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18441555
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kneubehl, A.R.
author: Lopez, J.
journal: Submitted (15-APR-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10596:1
position: 10596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10596:1:source
so part of: sequence
organism: Borrelia coriaceae
mol type: genomic DNA
strain: Co53
isolation source: tick tissue
host: Ornithodoros coriaceus
type material: type strain of Borrelia coriaceae
plasmid: lp11
country: USA: California
collection date: 1985

144
type: Taxonomy
SIO_000068: taxonomy

bcCo53_RS05515
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05515
old locus tag: bcCo53_001101
so part of: sequence
location: complement(73..585)
location: region:73-585:-1
so has part: feature:73-585:-1:exon
subclass of: SO_0000010

position:73:-1
position: 73
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:585:-1
position: 585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73-585:-1:exon

bcCo53_RS05515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05515
old locus tag: bcCo53_001101
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MDILNTIKSRVGDITQFKGDFGKEKARLLRYKQLKEEIKARTLEEAVNKLELAKALYEIKKNKLYRFDGYDYFYEFCLDYKFSRTMIYKYIRIGAYLEKEDVKEQDIIQGSLNKIINDIRVKKSSSMCKPVIIKLNLEDKEKQLILVKNKQKLEKFLLKYLLDNWESFII
SIO_010081: bcCo53_RS05515
subclass of: SO_0000673
so part of: bcCo53_RS05515
location: complement(73..585)
location: region:73-585:-1
so has part: feature:73-585:-1:exon

WP_241766593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73-585:-1:exon

bcCo53_RS05520
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05520
old locus tag: bcCo53_001102
so part of: sequence
location: complement(637..1404)
location: region:637-1404:-1
so has part: feature:637-1404:-1:exon
subclass of: SO_0000010

position:637:-1
position: 637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1404:-1
position: 1404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637-1404:-1:exon

bcCo53_RS05520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05520
old locus tag: bcCo53_001102
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRDIITISSIKGGVGKSVTAIMLGYIFSKRYRTLLIDIDSQASVTSYFLPYFENKVDIKEYNIYEVLKSKKSFMSIVHEITDDLHFAPSHIRLSQFSGENIIGQEYKLKTILTPYFDKYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYDILKSKMQEIISAYQKQDFKSYYVIQTLYEENRKIKKEFFDSLQQLYQEYVPIKIHRSAAIQKMITYRLEPRESERYYNEYLRVAEVIEGIENIRMT
SIO_010081: bcCo53_RS05520
subclass of: SO_0000673
so part of: bcCo53_RS05520
location: complement(637..1404)
location: region:637-1404:-1
so has part: feature:637-1404:-1:exon

WP_025408996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:637-1404:-1:exon

bcCo53_RS05525
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05525
old locus tag: bcCo53_001103
so part of: sequence
location: complement(1401..1664)
location: region:1401-1664:-1
so has part: feature:1401-1664:-1:exon
subclass of: SO_0000010

position:1401:-1
position: 1401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1664:-1
position: 1664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1401-1664:-1:exon

bcCo53_RS05525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05525
old locus tag: bcCo53_001103
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVGKINLQDVFIECNGKRYYTPLFLAKVNNISYFTIKNKIKKLNISVKAKDIGVINSLSEELLVAEDNLDKLFYDKRFKCLDSRGIR
SIO_010081: bcCo53_RS05525
subclass of: SO_0000673
so part of: bcCo53_RS05525
location: complement(1401..1664)
location: region:1401-1664:-1
so has part: feature:1401-1664:-1:exon

WP_025408997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1401-1664:-1:exon

bcCo53_RS05530
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05530
old locus tag: bcCo53_001104
so part of: sequence
location: complement(1667..1897)
location: region:1667-1897:-1
so has part: feature:1667-1897:-1:exon
subclass of: SO_0000010

position:1667:-1
position: 1667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1897:-1
position: 1897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1667-1897:-1:exon

bcCo53_RS05530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05530
old locus tag: bcCo53_001104
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683070.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRITLNFLNSLKNLKEFSKEMGYSDSSYLSRYIKKNKIEGVISSKDLFFKKRELLLSEEAQNLIKDKLKKEWQQGS
SIO_010081: bcCo53_RS05530
subclass of: SO_0000673
so part of: bcCo53_RS05530
location: complement(1667..1897)
location: region:1667-1897:-1
so has part: feature:1667-1897:-1:exon

WP_025408998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1667-1897:-1:exon

bcCo53_RS05535
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05535
old locus tag: bcCo53_001105
so part of: sequence
location: 2118..2693
location: region:2118-2693:1
so has part: feature:2118-2693:1:exon
subclass of: SO_0000010

position:2118:1
position: 2118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2693:1
position: 2693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2118-2693:1:exon

bcCo53_RS05535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05535
old locus tag: bcCo53_001105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLNFFLYNNSKLKKNQVRLIKLISILKYLNKNKLGYNQQDILNLANFFLKKEGYSIIKMKTLQKDLGFLKKNNVIKTFIIRLGEYKGSKTKYMPKINAYQILKQIFNSTEELLEKTFNIIYKLSKKKTNEKNRTKNSSVYNNIYNNIYNKEKTRIEKDNKQKWTIEKILEKYTLHGKIRQKKAEAQNTI
SIO_010081: bcCo53_RS05535
subclass of: SO_0000673
so part of: bcCo53_RS05535
location: 2118..2693
location: region:2118-2693:1
so has part: feature:2118-2693:1:exon

WP_025408999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2118-2693:1:exon

bcCo53_RS05540
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05540
old locus tag: bcCo53_001106
so part of: sequence
location: complement(4274..4909)
location: region:4274-4909:-1
so has part: feature:4274-4909:-1:exon
subclass of: SO_0000010

position:4274:-1
position: 4274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4909:-1
position: 4909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4274-4909:-1:exon

bcCo53_RS05540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05540
old locus tag: bcCo53_001106
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIKQDNIQERKLPMILNYDNYIIEGNRETFFGNSQYEANYKAKVDGFIVDFFKIPRSLKNKYEVNIKCLSSPDLPFGNIAMNCINIFKLIVDIINMQTGQAYDYDEFITKTETNKMLQYGAKLISALSRHFDEFNGTNYNESYYEWEKGWVDKKWIDYEPSLLEIKEMQKLNKKINQELNFKSHKRKISSLQTGQMRLLKAIKKVGRVQ
SIO_010081: bcCo53_RS05540
subclass of: SO_0000673
so part of: bcCo53_RS05540
location: complement(4274..4909)
location: region:4274-4909:-1
so has part: feature:4274-4909:-1:exon

WP_025409000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4274-4909:-1:exon

bcCo53_RS05545
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05545
old locus tag: bcCo53_001107
so part of: sequence
location: 5741..6376
location: region:5741-6376:1
so has part: feature:5741-6376:1:exon
subclass of: SO_0000010

position:5741:1
position: 5741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6376:1
position: 6376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5741-6376:1:exon

bcCo53_RS05545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05545
old locus tag: bcCo53_001107
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIKQDNIQERKLPMILNYDNYIIEGNRETFFGNSQYEANYKAKVDGFIVDFFKIPRSLKNKYEVNIKCLSSPDLPFGNIAMNCINIFKLIVDIINMQTGQAYDYDEFITKTETNKMLQYGAKLISALSRHFDEFNGTNYNESYYEWEKGWVDKKWIDYEPSLLEIKEMQKLNKKINQELNFKSHKRKISSLQTGQMRLLKAIKKVGRVQ
SIO_010081: bcCo53_RS05545
subclass of: SO_0000673
so part of: bcCo53_RS05545
location: 5741..6376
location: region:5741-6376:1
so has part: feature:5741-6376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5741-6376:1:exon

bcCo53_RS05550
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05550
old locus tag: bcCo53_001108
so part of: sequence
location: complement(7957..8532)
location: region:7957-8532:-1
so has part: feature:7957-8532:-1:exon
subclass of: SO_0000010

position:7957:-1
position: 7957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8532:-1
position: 8532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7957-8532:-1:exon

bcCo53_RS05550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05550
old locus tag: bcCo53_001108
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLNFFLYNNSKLKKNQVRLIKLISILKYLNKNKLGYNQQDILNLANFFLKKEGYSIIKMKTLQKDLGFLKKNNVIKTFIIRLGEYKGSKTKYMPKINAYQILKQIFNSTEELLEKTFNIIYKLSKKKTNEKNRTKNSSVYNNIYNNIYNKEKTRIEKDNKQKWTIEKILEKYTLHGKIRQKKAEAQNTI
SIO_010081: bcCo53_RS05550
subclass of: SO_0000673
so part of: bcCo53_RS05550
location: complement(7957..8532)
location: region:7957-8532:-1
so has part: feature:7957-8532:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7957-8532:-1:exon

bcCo53_RS05555
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05555
old locus tag: bcCo53_001109
so part of: sequence
location: 8985..9248
location: region:8985-9248:1
so has part: feature:8985-9248:1:exon
subclass of: SO_0000010

position:8985:1
position: 8985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9248:1
position: 9248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8985-9248:1:exon

bcCo53_RS05555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05555
old locus tag: bcCo53_001109
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVGKINLQDVFIECNGKRYYTPLFLAKVNNISYFTIKNKIKKLNISVKAKDIGVINSLSEELLVAEDNLDKLFYDKRFKCLDSRGIR
SIO_010081: bcCo53_RS05555
subclass of: SO_0000673
so part of: bcCo53_RS05555
location: 8985..9248
location: region:8985-9248:1
so has part: feature:8985-9248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8985-9248:1:exon

bcCo53_RS05560
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05560
old locus tag: bcCo53_001110
so part of: sequence
location: 9245..10012
location: region:9245-10012:1
so has part: feature:9245-10012:1:exon
subclass of: SO_0000010

position:9245:1
position: 9245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10012:1
position: 10012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9245-10012:1:exon

bcCo53_RS05560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05560
old locus tag: bcCo53_001110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRDIITISSIKGGVGKSVTAIMLGYIFSKRYRTLLIDIDSQASVTSYFLPYFENKVDIKEYNIYEVLKSKKSFMSIVHEITDDLHFAPSHIRLSQFSGENIIGQEYKLKTILTPYFDKYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYDILKSKMQEIISAYQKQDFKSYYVIQTLYEENRKIKKEFFDSLQQLYQEYVPIKIHRSAAIQKMITYRLEPRESERYYNEYLRVAEVIEGIENIRMT
SIO_010081: bcCo53_RS05560
subclass of: SO_0000673
so part of: bcCo53_RS05560
location: 9245..10012
location: region:9245-10012:1
so has part: feature:9245-10012:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9245-10012:1:exon

bcCo53_RS05565
type: Gene
subclass of: SO_0000704
RO_0002162: 144
locus tag: bcCo53_RS05565
old locus tag: bcCo53_001111
so part of: sequence
location: 10064..10570
location: region:10064-10570:1
so has part: feature:10064-10570:1:exon
subclass of: SO_0000010

position:10064:1
position: 10064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10570:1
position: 10570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10064-10570:1:exon

bcCo53_RS05565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 144
locus tag: bcCo53_RS05565
old locus tag: bcCo53_001111
inference: COORDINATES: protein motif:HMM:NF033725.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MDILNTIKSRVGDITQFKGDFGKEKARLLRYKQLKEEIKARTLEEAVNKLELAKALYEIKKNKLYRFDGYDYFYEFCLDYKFSRTMIYKYIRIGAYLEKEDVKEQDIIQGSLNKIINDIRVKKSSSMCKPVIIKLNLEDKEKQLILVKNKQKLEKFLLKYYWIIGNHL
SIO_010081: bcCo53_RS05565
subclass of: SO_0000673
so part of: bcCo53_RS05565
location: 10064..10570
location: region:10064-10570:1
so has part: feature:10064-10570:1:exon

WP_246938418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10064-10570:1:exon