Borrelia coriaceae strain Co53 plasmid cp30-1, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Submitted (15-APR-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP075078.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 141.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:11:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,761\nCDSs (total) :: 1,723\nGenes (coding) :: 1,660\nCDSs (with protein) :: 1,660\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 31 of 63\nPseudo Genes (incomplete) :: 29 of 63\nPseudo Genes (internal stop) :: 16 of 63\nPseudo Genes (multiple problems) :: 12 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012539836.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023135.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256998.1
chromosome replication/partitioning protein
COORDINATES: protein motif:HMM:NF015776.2
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539830.1
BlyB family putative holin accessory protein
COORDINATES: protein motif:HMM:NF017132.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016941.2
COORDINATES: protein motif:HMM:NF017093.2
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014540064.1
COORDINATES: protein motif:HMM:NF017423.2
COORDINATES: similar to AA sequence:RefSeq:WP_010256740.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658568.1
COORDINATES: protein motif:HMM:NF017358.2
COORDINATES: similar to AA sequence:RefSeq:WP_002658563.1
COORDINATES: similar to AA sequence:RefSeq:WP_006434259.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539756.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540018.1
COORDINATES: protein motif:HMM:NF017382.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539240.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658553.1
COORDINATES: protein motif:HMM:NF024429.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539237.1
COORDINATES: similar to AA sequence:RefSeq:WP_010259399.1
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_014540879.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539811.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539745.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539230.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015633339.1
COORDINATES: protein motif:HMM:NF015275.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539227.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014696684.1
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF021128.2