Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (19-FEB-2015) JIC, Department of Molecular Microbiology, Norwich Research Park, Norwich, NR4 7UH, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nLN831788.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 03:47:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,093\nCDSs (total) :: 7,002\nGenes (coding) :: 6,781\nCDSs (with protein) :: 6,781\nGenes (RNA) :: 91\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 3\nPseudo Genes (total) :: 221\nCDSs (without protein) :: 221\nPseudo Genes (ambiguous residues) :: 0 of 221\nPseudo Genes (frameshifted) :: 91 of 221\nPseudo Genes (incomplete) :: 176 of 221\nPseudo Genes (internal stop) :: 14 of 221\nPseudo Genes (multiple problems) :: 54 of 221\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain (C34 = DSM 42122 = NRRL B-24963)
type strain of Streptomyces leeuwenhoekii
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007493568.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004143717.1
COORDINATES: similar to AA sequence:RefSeq:WP_020135019.1
COORDINATES: similar to AA sequence:RefSeq:WP_007821455.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010613009.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004980414.1
COORDINATES: similar to AA sequence:RefSeq:WP_013002476.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF040299.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_018809971.1
COORDINATES: similar to AA sequence:RefSeq:WP_016469978.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024784.2
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_014043721.1
COORDINATES: protein motif:HMM:NF019884.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF022151.2
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018585424.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009336064.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF019976.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039369.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007493638.1
COORDINATES: similar to AA sequence:RefSeq:WP_020132569.1
COORDINATES: similar to AA sequence:RefSeq:WP_018104986.1
COORDINATES: similar to AA sequence:RefSeq:WP_018552902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386319.1
COORDINATES: similar to AA sequence:RefSeq:WP_003974520.1
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: similar to AA sequence:RefSeq:WP_018845117.1
COORDINATES: protein motif:HMM:NF013691.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014141362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446002.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003979839.1
COORDINATES: similar to AA sequence:RefSeq:WP_010352038.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522960.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522964.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009721262.1
COORDINATES: similar to AA sequence:RefSeq:WP_009188453.1
COORDINATES: protein motif:HMM:NF039652.1
COORDINATES: similar to AA sequence:RefSeq:WP_009721188.1