Aneurinibacillus thermoaerophilus strain CCM 8960 plasmid pAT1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.
Complete genome sequence of the strain Aneurinibacillus thermoaerophilus CCM 8960
Submitted (09-AUG-2021) Department of Biomedical Engineering, Brno University of Technology, Technicka 12, Brno 61600, Czech Republic
REFSEQ INFORMATION: The reference sequence is identical to\nCP080765.1.\nBacteria and source DNA available from Czech Collection of\nMicroorganisms (CCM).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2021\nAssembly Method :: Flye v. 2.8.1; racon v. 1.4.13; medaka v.\n 1.2.5; pilon v. 1.24\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 850.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 05:51:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,855\nCDSs (total) :: 3,701\nGenes (coding) :: 3,598\nCDSs (with protein) :: 3,598\nGenes (RNA) :: 154\nrRNAs :: 11, 11, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 12 (5S, 16S, 23S)\ntRNAs :: 115\nncRNAs :: 5\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 38 of 103\nPseudo Genes (incomplete) :: 76 of 103\nPseudo Genes (internal stop) :: 11 of 103\nPseudo Genes (multiple problems) :: 20 of 103\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Czech Republic:Brno,the central urban composting plant of the city Brno
COORDINATES: similar to AA sequence:RefSeq:WP_011968961.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015211.2
COORDINATES: protein motif:HMM:NF018886.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015385.2
COORDINATES: protein motif:HMM:NF016927.2
COORDINATES: protein motif:HMM:NF019450.2
copper amine oxidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008982850.1
COORDINATES: protein motif:HMM:NF022387.2
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: similar to AA sequence:RefSeq:WP_000185896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009331322.1
COORDINATES: similar to AA sequence:RefSeq:WP_020616134.1
COORDINATES: similar to AA sequence:RefSeq:WP_014644956.1
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005586515.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006676602.1
COORDINATES: similar to AA sequence:RefSeq:WP_016112314.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF018148.2
COORDINATES: similar to AA sequence:RefSeq:WP_012959290.1
COORDINATES: similar to AA sequence:RefSeq:WP_019258136.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004438673.1
COORDINATES: protein motif:HMM:NF013540.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000190249.1
COORDINATES: protein motif:HMM:NF006505.0
COORDINATES: similar to AA sequence:RefSeq:WP_019260134.1
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF040299.1
COORDINATES: similar to AA sequence:RefSeq:WP_009362107.1
COORDINATES: similar to AA sequence:RefSeq:WP_002153818.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417310.1
phage regulatory protein/antirepressor Ant
COORDINATES: similar to AA sequence:RefSeq:WP_018673253.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001153115.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_003353029.1
COORDINATES: similar to AA sequence:RefSeq:WP_009967326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015944797.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF019540.2
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005299158.1
COORDINATES: similar to AA sequence:RefSeq:WP_004430708.1
COORDINATES: similar to AA sequence:RefSeq:WP_000858838.1
COORDINATES: similar to AA sequence:RefSeq:WP_002084603.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]