Methanosarcina vacuolata Z-761 plasmid unnamed, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.
Methanogenic archaea and the global carbon cycle
Submitted (11-JUL-2014) Microbiology, University of Illinois at Urbana-Champaign, MC-110 601 S Goodwin Ave., Urbana, IL 61801, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP009519.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.3 and CLC v. 3.3 and Geneious\n v. 4.5\nGenome Coverage :: >20x\nSequencing Technology :: ABI 3730; 454 GS-FLX Titanium; Illumina\n GAIIx; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/29/2022 03:46:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,793\nCDSs (total) :: 3,722\nGenes (coding) :: 3,601\nCDSs (with protein) :: 3,601\nGenes (RNA) :: 71\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 2\nPseudo Genes (total) :: 121\nCDSs (without protein) :: 121\nPseudo Genes (ambiguous residues) :: 0 of 121\nPseudo Genes (frameshifted) :: 49 of 121\nPseudo Genes (incomplete) :: 79 of 121\nPseudo Genes (internal stop) :: 50 of 121\nPseudo Genes (multiple problems) :: 48 of 121\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011301994.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016358333.1
COORDINATES: similar to AA sequence:RefSeq:WP_011302007.1
COORDINATES: similar to AA sequence:RefSeq:WP_013179620.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_011301995.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301996.1
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: similar to AA sequence:RefSeq:WP_011021527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015051957.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF024777.2
COORDINATES: similar to AA sequence:RefSeq:WP_005226255.1
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: similar to AA sequence:RefSeq:WP_015412933.1
COORDINATES: similar to AA sequence:RefSeq:WP_011302005.1
COORDINATES: protein motif:HMM:NF012907.2
COORDINATES: similar to AA sequence:RefSeq:WP_011302004.1
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_011021068.1
COORDINATES: similar to AA sequence:RefSeq:WP_015411975.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014406042.1
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_007257940.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011843533.1
phenylacetate--CoA ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011021091.1
COORDINATES: similar to AA sequence:RefSeq:WP_015411606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011020209.1
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]