Exiguobacterium alkaliphilum strain B-3531D plasmid pE73, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.
Characterization and genomic analysis of Exiguobacterium sp. B-3531D, an effective crude oil degrading strain
Submitted (15-APR-2021) Laboratory of Physiology of microrganisms, IBPM RAS, Prospekt Nauki 5, Puschino, Moscow region 142290, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP073103.1.\nBacteria and source DNA available from All-Russian Collection of\nMicroorganisms - VKM.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2021\nAssembly Method :: SPAdes v. 3.15.2; Flye v. 2.8.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 186.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:37:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,125\nCDSs (total) :: 3,027\nGenes (coding) :: 2,995\nCDSs (with protein) :: 2,995\nGenes (RNA) :: 98\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 17 of 32\nPseudo Genes (incomplete) :: 10 of 32\nPseudo Genes (internal stop) :: 7 of 32\nPseudo Genes (multiple problems) :: 2 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF036438.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002191972.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392508.1
COORDINATES: similar to AA sequence:RefSeq:WP_019390781.1
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016766432.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766433.1
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_006830695.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014970417.1
COORDINATES: protein motif:HMM:NF012787.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF018942.2
GO:0030416 - methylamine metabolic process [Evidence IEA]
MauE/DoxX family redox-associated membrane protein
COORDINATES: protein motif:HMM:NF039330.1
COORDINATES: protein motif:HMM:NF012369.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: protein motif:HMM:NF013742.2
COORDINATES: protein motif:HMM:NF037898.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002170923.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020278248.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611172.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002325267.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_002325264.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612077.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020442.2
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_008634546.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein