Exiguobacterium alkaliphilum strain B-3531D plasmid pE52, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.
Characterization and genomic analysis of Exiguobacterium sp. B-3531D, an effective crude oil degrading strain
Submitted (15-APR-2021) Laboratory of Physiology of microrganisms, IBPM RAS, Prospekt Nauki 5, Puschino, Moscow region 142290, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP073102.1.\nBacteria and source DNA available from All-Russian Collection of\nMicroorganisms - VKM.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2021\nAssembly Method :: SPAdes v. 3.15.2; Flye v. 2.8.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 186.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:37:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,125\nCDSs (total) :: 3,027\nGenes (coding) :: 2,995\nCDSs (with protein) :: 2,995\nGenes (RNA) :: 98\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 17 of 32\nPseudo Genes (incomplete) :: 10 of 32\nPseudo Genes (internal stop) :: 7 of 32\nPseudo Genes (multiple problems) :: 2 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025081.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008637138.1
COORDINATES: protein motif:HMM:NF036438.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018395858.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008592145.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008498839.1
COORDINATES: protein motif:HMM:NF036624.2
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611194.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000400079.1
COORDINATES: similar to AA sequence:RefSeq:WP_001998768.1
GO:0019197 - phosphoenolpyruvate-dependent sugar phosphotransferase complex [Evidence IEA]
GO:0015155 - lactose transmembrane transporter activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
lactose-specific PTS transporter subunit EIIC
COORDINATES: similar to AA sequence:RefSeq:WP_001030967.1
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_000910758.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001023673.1
galactose-6-phosphate isomerase subunit LacA
COORDINATES: similar to AA sequence:RefSeq:WP_001829777.1
galactose-6-phosphate isomerase subunit LacB
COORDINATES: similar to AA sequence:RefSeq:WP_000603954.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000949804.1
GO:0009025 - tagatose-bisphosphate aldolase activity [Evidence IEA]
GO:0019512 - lactose catabolic process via tagatose-6-phosphate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001062593.1
COORDINATES: similar to AA sequence:RefSeq:WP_007428817.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011225879.1
COORDINATES: similar to AA sequence:RefSeq:WP_012726878.1
COORDINATES: similar to AA sequence:RefSeq:WP_003726066.1
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016507799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012370553.1
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021530.2
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019467798.1
COORDINATES: similar to AA sequence:RefSeq:WP_016507879.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014893836.1
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF012675.2
COORDINATES: similar to AA sequence:RefSeq:WP_003225161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014893837.1
COORDINATES: similar to AA sequence:RefSeq:WP_006830801.1
COORDINATES: similar to AA sequence:RefSeq:WP_019416178.1
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: similar to AA sequence:RefSeq:WP_019390781.1