Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Parageobacillus.
Complete genome sequence of Geobacillus thermoglucosidasius NCIMB 11955, the progenitor of a bioethanol production strai
Submitted (26-JUL-2016) Life Sciences, University of Nottingham, Centre for Biomolecular Sciences, Nottingham, Nottinghamshire NG7 2RD, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nCP016624.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Work Bench v. 7.0.4\nGenome Coverage :: 188\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 10:04:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,023\nCDSs (total) :: 3,901\nGenes (coding) :: 3,772\nCDSs (with protein) :: 3,772\nGenes (RNA) :: 122\nrRNAs :: 7, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 10, 10 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 5\nPseudo Genes (total) :: 129\nCDSs (without protein) :: 129\nPseudo Genes (ambiguous residues) :: 0 of 129\nPseudo Genes (frameshifted) :: 77 of 129\nPseudo Genes (incomplete) :: 89 of 129\nPseudo Genes (internal stop) :: 31 of 129\nPseudo Genes (multiple problems) :: 54 of 129\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Bacillus thermoglucosidasius
COORDINATES: similar to AA sequence:RefSeq:WP_013878226.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008881771.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011888500.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888499.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888498.1
COORDINATES: similar to AA sequence:RefSeq:WP_006211841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881726.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011888496.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008881728.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881729.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881730.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888493.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888487.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008881734.1
COORDINATES: similar to AA sequence:RefSeq:WP_015863241.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008881741.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888480.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011888478.1
COORDINATES: similar to AA sequence:RefSeq:WP_000495110.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881747.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888475.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011888474.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881752.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881753.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881754.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881755.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084239.1
COORDINATES: similar to AA sequence:RefSeq:WP_000432941.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888468.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881758.1
COORDINATES: similar to AA sequence:RefSeq:WP_000471229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004891091.1
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611234.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013877725.1
COORDINATES: protein motif:HMM:NF040103.1
COORDINATES: protein motif:HMM:NF033550.5
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_015880643.1
COORDINATES: similar to AA sequence:RefSeq:WP_020279897.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020376.2
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000191163.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013401969.1