Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Parageobacillus.
Complete genome sequence of Geobacillus thermoglucosidasius NCIMB 11955, the progenitor of a bioethanol production strai
Submitted (26-JUL-2016) Life Sciences, University of Nottingham, Centre for Biomolecular Sciences, Nottingham, Nottinghamshire NG7 2RD, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nCP016623.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Work Bench v. 7.0.4\nGenome Coverage :: 188\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 10:04:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,023\nCDSs (total) :: 3,901\nGenes (coding) :: 3,772\nCDSs (with protein) :: 3,772\nGenes (RNA) :: 122\nrRNAs :: 7, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 10, 10 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 5\nPseudo Genes (total) :: 129\nCDSs (without protein) :: 129\nPseudo Genes (ambiguous residues) :: 0 of 129\nPseudo Genes (frameshifted) :: 77 of 129\nPseudo Genes (incomplete) :: 89 of 129\nPseudo Genes (internal stop) :: 31 of 129\nPseudo Genes (multiple problems) :: 54 of 129\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Bacillus thermoglucosidasius
COORDINATES: similar to AA sequence:RefSeq:WP_019418135.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025519.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008881184.1
GO:0005215 - transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015863957.1
COORDINATES: similar to AA sequence:RefSeq:WP_017550295.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017436388.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003116653.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016424146.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000286714.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_390188.2
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013401980.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013878216.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007087683.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013878214.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013878213.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401929.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013401930.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011231495.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013401932.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401934.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401935.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878209.1
COORDINATES: similar to AA sequence:RefSeq:WP_013399927.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876179.1
COORDINATES: protein motif:HMM:NF039544.1
COORDINATES: similar to AA sequence:RefSeq:WP_013400797.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000469434.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015863243.1
COORDINATES: similar to AA sequence:RefSeq:WP_003353599.1
COORDINATES: similar to AA sequence:RefSeq:WP_012820763.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013878204.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878203.1
hydantoinase/oxoprolinase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013401944.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401945.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878202.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013401947.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401948.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401949.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401950.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401951.1
COORDINATES: similar to AA sequence:RefSeq:WP_015863235.1
COORDINATES: similar to AA sequence:RefSeq:WP_015863234.1
COORDINATES: similar to AA sequence:RefSeq:WP_013401953.1
COORDINATES: similar to AA sequence:RefSeq:WP_015593673.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015593510.1
4-oxalocrotonate tautomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017727755.1
COORDINATES: similar to AA sequence:RefSeq:WP_017727752.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013400637.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: protein motif:HMM:NF037653.2
XylR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003389316.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017437564.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_018391979.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007086207.1
COORDINATES: similar to AA sequence:RefSeq:WP_014279268.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019418210.1
COORDINATES: similar to AA sequence:RefSeq:WP_013145234.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015374934.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013401958.1
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF023226.2
COORDINATES: similar to AA sequence:RefSeq:WP_013858387.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007723913.1
COORDINATES: similar to AA sequence:RefSeq:WP_015863779.1
COORDINATES: similar to AA sequence:RefSeq:WP_058206662.1
aureocin A53 family class IId bacteriocin
COORDINATES: similar to AA sequence:RefSeq:WP_003353243.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154625.1
COORDINATES: similar to AA sequence:RefSeq:WP_016202574.1
COORDINATES: similar to AA sequence:RefSeq:WP_019721339.1
COORDINATES: similar to AA sequence:RefSeq:WP_006831258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014195151.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878226.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013399860.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.