Geosporobacter ferrireducens strain IRF9 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Geosporobacter.
Genomic analysis reveals versatility of anaerobic energy metabolism of Geosporobacter ferrireducens IRF9 of phylum Firmicutes
Submitted (12-SEP-2016) Department of Microbiology, Chungbuk National University, 1 Chungdae-ro Seowon-gu, Cheongju, Chungbuk 28644, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP017270.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly v. 3\nGenome Coverage :: not specified\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 01:16:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,549\nCDSs (total) :: 5,386\nGenes (coding) :: 5,329\nCDSs (with protein) :: 5,329\nGenes (RNA) :: 163\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 126\nncRNAs :: 4\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 22 of 57\nPseudo Genes (incomplete) :: 33 of 57\nPseudo Genes (internal stop) :: 14 of 57\nPseudo Genes (multiple problems) :: 11 of 57\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Geosporobacter ferrireducens
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014036.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018133354.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012063668.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007286809.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009757043.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003428816.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: similar to AA sequence:RefSeq:WP_014261819.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006307255.1
COORDINATES: similar to AA sequence:RefSeq:WP_011025647.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012159418.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009083568.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004617965.1
COORDINATES: similar to AA sequence:RefSeq:WP_006570430.1
COORDINATES: similar to AA sequence:RefSeq:WP_013495710.1
COORDINATES: similar to AA sequence:RefSeq:WP_007061040.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013275999.1
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012063759.1
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013361686.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015311576.1
GO:0008252 - nucleotidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006310337.1
COORDINATES: similar to AA sequence:RefSeq:WP_003870653.1
GO:0003824 - catalytic activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
oxaloacetate decarboxylase subunit alpha