Geosporobacter ferrireducens strain IRF9 plasmid unnamed1, complete sequence.
type: Entry
definition: Geosporobacter ferrireducens strain IRF9 plasmid unnamed1, complete sequence.
sequence version: NZ_CP017270.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP017270.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05786931
keyword: RefSeq
source: Geosporobacter ferrireducens
organism: Geosporobacter ferrireducens
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Geosporobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP017270.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly v. 3\nGenome Coverage :: not specified\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 01:16:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,549\nCDSs (total) :: 5,386\nGenes (coding) :: 5,329\nCDSs (with protein) :: 5,329\nGenes (RNA) :: 163\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 126\nncRNAs :: 4\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 22 of 57\nPseudo Genes (incomplete) :: 33 of 57\nPseudo Genes (internal stop) :: 14 of 57\nPseudo Genes (multiple problems) :: 11 of 57\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24587
topology: circular
so has quality: SO_0000988
location: 1..24587
location: region:1-24587:1
RO_0002162: 1424294

NZ_CP017270
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05786931
type: BioSample
SIO_000068: biosample

1
title: Genomic analysis reveals versatility of anaerobic energy metabolism of Geosporobacter ferrireducens IRF9 of phylum Firmicutes
author: Kim, S.-J.
journal: Unpublished

2
title: Direct Submission
author: Kim, S.-J.
journal: Submitted (12-SEP-2016) Department of Microbiology, Chungbuk National University, 1 Chungdae-ro Seowon-gu, Cheongju, Chungbuk 28644, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24587:1
position: 24587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24587:1:source
so part of: sequence
organism: Geosporobacter ferrireducens
mol type: genomic DNA
strain: IRF9
isolation source: oil contaninated soil
type material: type strain of Geosporobacter ferrireducens
plasmid: unnamed1
country: South Korea:Daejeon
collection date: 2009-08

1424294
type: Taxonomy
SIO_000068: taxonomy

Gferi_RS27250
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27250
old locus tag: Gferi_27240
so part of: sequence
location: complement(38..325)
location: region:38-325:-1
so has part: feature:38-325:-1:exon
subclass of: SO_0000010

position:38:-1
position: 38
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:325:-1
position: 325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38-325:-1:exon

Gferi_RS27250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27250
old locus tag: Gferi_27240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEELPQKLLSLEFKNAILPYSLILFSVAAALDTIYAVTLFSAAYILGMFFHMQQKLPTGFTALQKPYCSYGKSFDIFFPFYTYFTVSYFFYTVH
SIO_010081: Gferi_RS27250
subclass of: SO_0000673
so part of: Gferi_RS27250
location: complement(38..325)
location: region:38-325:-1
so has part: feature:38-325:-1:exon

WP_069981637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38-325:-1:exon

Gferi_RS27255
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27255
old locus tag: Gferi_27245
so part of: sequence
location: complement(391..999)
location: region:391-999:-1
so has part: feature:391-999:-1:exon
subclass of: SO_0000010

position:391:-1
position: 391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:999:-1
position: 999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391-999:-1:exon

Gferi_RS27255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27255
old locus tag: Gferi_27245
inference: COORDINATES: protein motif:HMM:NF014036.2
GO function: GO:0005525 - GTP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 50S ribosome-binding GTPase
translation: MKKCLIVGKPNVGKTLFMLNFAQFLHLETVNIQLIYHNGVIENTSYSISRAKELLSSVSPYKTICLQVLEADIPMGKGRQRIQVIDSSGLTDGIHMNVETRRAMAQTLTAIRESDIILHMFDISSMFYDHPSHSISKVDYQLAEFGQLKDGYAILANKVDLVPNKGPVVQLQKQFPEHLVIPISAKTSSGFSEVRTFVRRRL
SIO_010081: Gferi_RS27255
subclass of: SO_0000673
so part of: Gferi_RS27255
location: complement(391..999)
location: region:391-999:-1
so has part: feature:391-999:-1:exon

WP_069981229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:391-999:-1:exon

Gferi_RS27260
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27260
old locus tag: Gferi_27250
so part of: sequence
location: complement(996..1961)
location: region:996-1961:-1
so has part: feature:996-1961:-1:exon
subclass of: SO_0000010

position:996:-1
position: 996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1961:-1
position: 1961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:996-1961:-1:exon

Gferi_RS27260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27260
old locus tag: Gferi_27250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018133354.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKRNPIGRSYEDILNMFEYGKLTTEETLKKLSVIRNGKAVQPLQAEQPEEHLDEILAELESLIGLNNVKGLVKEIQAYINIQKKRRVEQLVADSLVLHMIFRGNPGTGKTTVARLLGKIFQKMGVLEKGHLIEVERADLVGEYIGHTAVKVRDQIKRSIGGIMFIDEAYSLARGGEKDFGKEAIDALVKSMEDYKDNLVLILAGYKDEMDTFLRSNPGLKSRFPIHIDFPDYTLEELILIAERMVEKRDYKLSLSSKARLAKIISKKRIEDGINSGNARLVRNIIERAIRKQAVRLQKGEDFSRENLLMLNSDDITEEDYT
SIO_010081: Gferi_RS27260
subclass of: SO_0000673
so part of: Gferi_RS27260
location: complement(996..1961)
location: region:996-1961:-1
so has part: feature:996-1961:-1:exon

WP_236932669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:996-1961:-1:exon

Gferi_RS27265
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: hfq
locus tag: Gferi_RS27265
old locus tag: Gferi_27255
so part of: sequence
location: complement(2068..2313)
location: region:2068-2313:-1
so has part: feature:2068-2313:-1:exon
subclass of: SO_0000010

position:2068:-1
position: 2068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2313:-1
position: 2313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2068-2313:-1:exon

Gferi_RS27265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: hfq
locus tag: Gferi_RS27265
old locus tag: Gferi_27255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012063668.1
GO function: GO:0003723 - RNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA chaperone Hfq
translation: MKTVINLQDVFLNQVRKEHIPITIYLINGFQLKGSVKGFDSYTIVLDSDGKQHLIYKHAVSTITPMRAINFSTPNKRQDEE
SIO_010081: Gferi_RS27265
subclass of: SO_0000673
so part of: Gferi_RS27265
location: complement(2068..2313)
location: region:2068-2313:-1
so has part: feature:2068-2313:-1:exon

WP_069981230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2068-2313:-1:exon

Gferi_RS27270
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: miaA
locus tag: Gferi_RS27270
old locus tag: Gferi_27260
so part of: sequence
location: complement(2356..3297)
location: region:2356-3297:-1
so has part: feature:2356-3297:-1:exon
subclass of: SO_0000010

position:2356:-1
position: 2356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3297:-1
position: 3297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2356-3297:-1:exon

Gferi_RS27270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: miaA
locus tag: Gferi_RS27270
old locus tag: Gferi_27260
EC number: 2.5.1.75
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007286809.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
translation: MKKPLVIIVGPTGVGKTDLSIEIAKKMDGEIVSADSMQIYKHMDIGSAKPSIEEQDHIPHYLMDEIDPREEFSVAQYQKKAKAYIEKILLSGKLPIIVGGTGLYVNSIIYNIDFTATISNWNLRKQLEEEAHKYGNKYIHDKLRNIDSEAAERIHPNNLKRVIRALEVYYEGGEKIKDFQESLTENPAYQYAMIGLIRDRKELYERINLRVDLMIQQGLIEEVKNLMASGLDTDAISMKGLGYKEIIRYLKGDYSLEAAVEIIKRDTRRYAKRQITWFKRYDQIQWFDVGAYEEKKVFLHDITNFIEGKLNLL
SIO_010081: Gferi_RS27270
subclass of: SO_0000673
so part of: Gferi_RS27270
location: complement(2356..3297)
location: region:2356-3297:-1
so has part: feature:2356-3297:-1:exon

WP_069981231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2356-3297:-1:exon

Gferi_RS27275
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: mutL
locus tag: Gferi_RS27275
old locus tag: Gferi_27265
so part of: sequence
location: complement(3311..5143)
location: region:3311-5143:-1
so has part: feature:3311-5143:-1:exon
subclass of: SO_0000010

position:3311:-1
position: 3311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5143:-1
position: 5143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3311-5143:-1:exon

Gferi_RS27275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: mutL
locus tag: Gferi_RS27275
old locus tag: Gferi_27265
inference: COORDINATES: protein motif:HMM:TIGR00585.2
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO process: GO:0006298 - mismatch repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA mismatch repair endonuclease MutL
translation: MNNRIHLLDSFTSNKIAAGEVVDRPASVIKELVENAIDALATMIVIEVRDAGKEYIRISDNGSGIYSSDVEIAFERHATSKITQIEDLSSTLSLGFRGEALASIASVSQVELITKTEEAPAGIHLELHGGKVIFKKEIGCPTGTTVIVKNLFYNTPARFKFLRNNTSESSHIIDLVSKIALAHPDKGFKLINNNSIVFVTSGTNNIFHTITSIYGKELAKNMLTAHKAENNYFVEAYFSKTDMYRGNRQQQAVFVNGRLIKSKVVTEAIDEAYRTLLPINKFPICFLYLKIPPEEIDVNIHPAKTEIKFSNEKLIKSLLISTLKENLLQEKLIPEIKLTPKNQEELRQETFIDIPAVSNKKNIESVREEPLGREDKNVYFTNNKMTEDKKPTIPFDRNERKAIDEPEKPTVENIIYHPHLINIQIVGQIFSSYLVGDDGLQMYLIDQHAAHEKILYTQLLKQYKEKKVYAQKLLTPIIVELSPAEFEKLKNDLKVFEDLGFEVEPFGRSAFLIRSVPLQFGEPETKNFFMEIVEIYSTESGISDYHLKIEKIISMACKAAVKANNKLHKIEMHALMKQLAALENPYTCPHGRPVIISMSKQEIEKKFKRT
SIO_010081: Gferi_RS27275
subclass of: SO_0000673
so part of: Gferi_RS27275
location: complement(3311..5143)
location: region:3311-5143:-1
so has part: feature:3311-5143:-1:exon

WP_069981232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3311-5143:-1:exon

Gferi_RS27280
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: mutS
locus tag: Gferi_RS27280
old locus tag: Gferi_27270
so part of: sequence
location: complement(5152..7785)
location: region:5152-7785:-1
so has part: feature:5152-7785:-1:exon
subclass of: SO_0000010

position:5152:-1
position: 5152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7785:-1
position: 7785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5152-7785:-1:exon

Gferi_RS27280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: mutS
locus tag: Gferi_RS27280
old locus tag: Gferi_27270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009757043.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
GO process: GO:0006298 - mismatch repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA mismatch repair protein MutS
translation: MEQLTPMMKQYLEQKDQYPDCILFFRLGDFYEMFFEDAVLAAKELEIALTGRDCGLEERAPMCGVPYHAAENYISKLIDKGYKVAICEQVEDPSAAKGIVKREVIKVITPGTVIDPSMLKEKENNYIMAALFHEEGIGISYADISTGDLRVTEFTGKNVFSNFLNEAVKINPREIIINQDSYEDLAVEREIRAVCSQTYITKFDSWAYKIDYGVKTLKNHFHLLSLEGLGLQDHSLCTGSAGALLTYLEQTHKKSINHLYKIQYYHTEDYMVLDKTTRKNLELTETMRDRSRKGSLLWVLDKTNTAMGARLLKQWIEEPLTRSRDIQQRLDAVEALKVDLLTREDLKEYLRETYDLERLVGRISYGNANGRDLIWLKSSLSMIPKIKILLNSFSCDALIEINDRMNTHQEVIQCIEDAIVDDPPISLKDGGIIKETYHPEIFNLREAITKGKSWIVNLETEEKQKTGIKSLKIGYNKVFGYYIEVTKSNLGLVPSHYIRKQTLANAERYITPELKEIESKILGAEERITELEYQIFTEVREKVSAHTEMIQKTAKAIAILDVLISFADISDRQNYTKPVINEDHLIHIQNGRHPVVEKMMSESYFIPNDTLLDCKDNRFTILTGPNMAGKSTYMRQVSLIVLMAQIGCFVPADAAVIGIVDRIFTRVGASDDLAQGQSTFMVEMSELANIINAATPKSLILLDEIGRGTSTYDGLSIAWAVVEYISSFEHLGARTLFATHYHELTELEGILEGVKNYCIAVKEKGDDIIFLRKIIRGGADQSYGIQVAKLAGVSEKIVNRAKQILYQLEANDINKRNQGQDIKESEIALTKDEQLDLFHYHTDQIVSELLKIDVLNTTPLEAMNHLHRLLNMAKDCR
SIO_010081: Gferi_RS27280
subclass of: SO_0000673
so part of: Gferi_RS27280
location: complement(5152..7785)
location: region:5152-7785:-1
so has part: feature:5152-7785:-1:exon

WP_069981233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5152-7785:-1:exon

Gferi_RS27285
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: miaB
locus tag: Gferi_RS27285
old locus tag: Gferi_27275
so part of: sequence
location: complement(7882..9321)
location: region:7882-9321:-1
so has part: feature:7882-9321:-1:exon
subclass of: SO_0000010

position:7882:-1
position: 7882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9321:-1
position: 9321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7882-9321:-1:exon

Gferi_RS27285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: miaB
locus tag: Gferi_RS27285
old locus tag: Gferi_27275
EC number: 2.8.4.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003428816.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
translation: MSKREIVKVSTEEQLRQQIYINEVRQINDEFYYEKGNKKKAMIITYGCQMNEHDSEKLAGMLNNMGYTETNEQEEADLIIYNTCCVRENAELKVYGNLGQLKPLKKERPDMIIAVCGCMMQQAHVVDQIKKKYNHVDLVFGTHNLHNFPELLANCKKSDHMIVEVWDEEGTVVEGIPVVRKYGLKAFVNIMYGCNNFCTYCIVPYTRGRERSRNPEDIVEEIKQLVAQGTKEVTLLGQNVNSYGKTLENKIDFSDLLIQINETEGLERIRFMTSHPKDLSPRLIEAMRDCDKICEHIHLPVQSGSTKILKEMNRHYTKEQYLDLVTQLKASIPNIAITTDIIVGFPGETEEDFLETLDLVKQVEYDSAFTFLYSVREGTPAAKLTEQVPEDVKHERFNRLLNTLNEIIARKNMDYKDAVVEVLVEGESKNDASKLMGRTRSSKLVNLSGSKDLIGQLAQVKITEARTFSLNGIAIDHTL
SIO_010081: Gferi_RS27285
subclass of: SO_0000673
so part of: Gferi_RS27285
location: complement(7882..9321)
location: region:7882-9321:-1
so has part: feature:7882-9321:-1:exon

WP_069981234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7882-9321:-1:exon

Gferi_RS27295
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27295
old locus tag: Gferi_27285
so part of: sequence
location: 9923..11116
location: region:9923-11116:1
so has part: feature:9923-11116:1:exon
subclass of: SO_0000010

position:9923:1
position: 9923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11116:1
position: 11116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9923-11116:1:exon

Gferi_RS27295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27295
old locus tag: Gferi_27285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014261819.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyridoxal phosphate-dependent aminotransferase
translation: MKLSTRIVNMQESPIRKLVPFAENAKKEGKKVYHLNIGQPDIETPENFMNAVRKFDDKVLKYSFSQGMPELVDAMIKYYKKYNMAFEKDEILIMNGGSEALLFALIAIADDGDEVIVPEPFYTNYNGFGSAVGVNVVPITTEASKGFHLPAKEEIIKAINSKSRAILLSNPGNPTGVVYTKKEVQMLADIAKEYNLYVIADEVYREFVYDNLEYTSFGNISEIQDHVIIVDSVSKRFSACGARIGAVLSKNKELMKQILKLCQGRLCCPTLEQIGAVELYNVSDDYFNAVLVEYQKRRDIVFEGLSSIPGVICERPTGAFYVIAKLPVINAEEFVIWMLKDFSVDNETVMLAPAEGFYATPGLGKDEARIAYILNEDDLRKSMNILKIALEKYPQKK
SIO_010081: Gferi_RS27295
subclass of: SO_0000673
so part of: Gferi_RS27295
location: 9923..11116
location: region:9923-11116:1
so has part: feature:9923-11116:1:exon

WP_069981638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9923-11116:1:exon

Gferi_RS28410
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS28410
so part of: sequence
location: complement(11155..11295)
location: region:11155-11295:-1
so has part: feature:11155-11295:-1:exon
subclass of: SO_0000010

position:11155:-1
position: 11155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11295:-1
position: 11295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11155-11295:-1:exon

Gferi_RS28410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS28410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYEKDYEVKGFGEPRECGFITCIHCIAGYCNNGTCELDERLLRQED
SIO_010081: Gferi_RS28410
subclass of: SO_0000673
so part of: Gferi_RS28410
location: complement(11155..11295)
location: region:11155-11295:-1
so has part: feature:11155-11295:-1:exon

WP_156782281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11155-11295:-1:exon

Gferi_RS27300
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27300
old locus tag: Gferi_27290
so part of: sequence
location: complement(11405..12031)
location: region:11405-12031:-1
so has part: feature:11405-12031:-1:exon
subclass of: SO_0000010

position:11405:-1
position: 11405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12031:-1
position: 12031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11405-12031:-1:exon

Gferi_RS27300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27300
old locus tag: Gferi_27290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006307255.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MIDKEKKYSISEVSKITDYDTHVLRYYEDEFKLEIPRTNSNRRYYTYKEIEQFIYIKELQEKGLTNKQIKLILDTPEILVHGNHEVAVTASSSELSIINQPAELELSSMLEELCNRINHNMNEQLQYKIDETKNEIINHFDDVVQDMEGNETHFKKEKDILICENARLKMRLKQKSYELAELKEQVKKLNTKQPLWKKIFGEKKDVVL
SIO_010081: Gferi_RS27300
subclass of: SO_0000673
so part of: Gferi_RS27300
location: complement(11405..12031)
location: region:11405-12031:-1
so has part: feature:11405-12031:-1:exon

WP_069973655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11405-12031:-1:exon

Gferi_RS27305
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27305
old locus tag: Gferi_27295
so part of: sequence
location: complement(12076..12936)
location: region:12076-12936:-1
so has part: feature:12076-12936:-1:exon
subclass of: SO_0000010

position:12076:-1
position: 12076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12936:-1
position: 12936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12076-12936:-1:exon

Gferi_RS27305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27305
old locus tag: Gferi_27295
EC number: 1.17.7.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011025647.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
translation: MEIIIAKNAGYCFGVKEAIQRTFHAVDLHRDKRIHTYGPLIHNPQVVQKLESMGVQSIDDIQDGKDSIVIIRSHGVPLEVYEKAKENNVEIIDATCPFVRKVQKIVYEYHQKGYSIVIIGDPTHPEVIGINGWCDNKAYILNHVFQVDSLPNFDKLCIVAQTTITSELWNAILKELNHKAKVVEPFNTICVATRERQSSCANVAQQVDAMIVIGGYHSSNTQKLLQISKKYCKYTYHVETAEDLPMDIIEKMNKIGVTAGASTPDWIIKEVIEKMSSMDQNNNERN
SIO_010081: Gferi_RS27305
subclass of: SO_0000673
so part of: Gferi_RS27305
location: complement(12076..12936)
location: region:12076-12936:-1
so has part: feature:12076-12936:-1:exon

WP_069981639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12076-12936:-1:exon

Gferi_RS27310
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27310
old locus tag: Gferi_27300
so part of: sequence
location: complement(13017..13610)
location: region:13017-13610:-1
so has part: feature:13017-13610:-1:exon
subclass of: SO_0000010

position:13017:-1
position: 13017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13610:-1
position: 13610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13017-13610:-1:exon

Gferi_RS27310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27310
old locus tag: Gferi_27300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012159418.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysophospholipid acyltransferase family protein
translation: MDFYTFARNLMKIYVDLFYRIEVENLHYIPKEGACIVCSNHIHNLDPVIIGTTIPRKMTYMAKEELFGIKILGAIIRKLDMIPVNRDGADLSAIKNSLKALNSGKVLGIFPEGTRKKKGAPSNVKPGLAMIAIKGKVPIVPVAIISDYKLFRKIKVKVGAPLSFEEYYGQKLSVDTYQELSQKVMEQIETEIACSIS
SIO_010081: Gferi_RS27310
subclass of: SO_0000673
so part of: Gferi_RS27310
location: complement(13017..13610)
location: region:13017-13610:-1
so has part: feature:13017-13610:-1:exon

WP_069973658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13017-13610:-1:exon

Gferi_RS27315
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: cmk
locus tag: Gferi_RS27315
old locus tag: Gferi_27305
so part of: sequence
location: complement(13623..14261)
location: region:13623-14261:-1
so has part: feature:13623-14261:-1:exon
subclass of: SO_0000010

position:13623:-1
position: 13623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14261:-1
position: 14261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13623-14261:-1:exon

Gferi_RS27315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: cmk
locus tag: Gferi_RS27315
old locus tag: Gferi_27305
EC number: 2.7.4.25
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009083568.1
GO function: GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO process: GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: (d)CMP kinase
translation: MSITIDGPAGAGKSTIAKIIAKVKKLTYIDTGAMYRAVTLKFIQNFVDTKDAQQIEALLADIRIELIGDDIYLNGTNVTEEIRSPEVNQLVSEVAKLSPVRKKMVEFQRTIAAAQNVVMDGRDIGTFVLPDAAYKFFLTASIDERARRRFEEQRRKGFTTSLEDVKSEISNRDRIDTERELAPLIQAEDAILIDTTGLSIEKVVDKILSYIQ
SIO_010081: Gferi_RS27315
subclass of: SO_0000673
so part of: Gferi_RS27315
location: complement(13623..14261)
location: region:13623-14261:-1
so has part: feature:13623-14261:-1:exon

WP_069981236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13623-14261:-1:exon

Gferi_RS27320
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27320
old locus tag: Gferi_27310
so part of: sequence
location: complement(14363..14551)
location: region:14363-14551:-1
so has part: feature:14363-14551:-1:exon
subclass of: SO_0000010

position:14363:-1
position: 14363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14551:-1
position: 14551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14363-14551:-1:exon

Gferi_RS27320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27320
old locus tag: Gferi_27310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKLILKTVYIIERIFFSLAIACLLSLFLLQALHLKSDPDSPANSLSQFFKEEIINLRLNKN
SIO_010081: Gferi_RS27320
subclass of: SO_0000673
so part of: Gferi_RS27320
location: complement(14363..14551)
location: region:14363-14551:-1
so has part: feature:14363-14551:-1:exon

WP_069973659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14363-14551:-1:exon

Gferi_RS27325
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27325
old locus tag: Gferi_27315
so part of: sequence
location: complement(14592..15818)
location: region:14592-15818:-1
so has part: feature:14592-15818:-1:exon
subclass of: SO_0000010

position:14592:-1
position: 14592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15818:-1
position: 15818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14592-15818:-1:exon

Gferi_RS27325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27325
old locus tag: Gferi_27315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004617965.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MESIVVIGGGAAGMLAAGTAAAQGKQVVLLEKNEKLGKKLYITGKGRCNITNTGDIEDLLQNITKNRNFLYSAFYSFTNDDILHLLHQYGVPTKVERGNRVFPRSDKSSDVIKALMTYMVSHGVDIRLQSEVRDVLYEDNAVRGVRLTNNQILPCSKLIIATGGLSYPVTGSTGDGYTFAQKAGHHIVSLKPALVPLETEEKWIKNLQGLSLKNVSLQVFYQDREIHREFGEMIFTHFGISGPIVLSTSNYLAKYLDKEKIKAFINLKPALDEDTLDKRIQRDFDKYSRKQLKNALDDLLPAKLIPVIIQLSGIPEEKFVNQISKEERRILLKLITGLPLTITRTRPIQEAIITSGGIDVKEINPSTLESKKISGLHFAGEVLDVEGLTGGYNLQIAFSTGYLAGISV
SIO_010081: Gferi_RS27325
subclass of: SO_0000673
so part of: Gferi_RS27325
location: complement(14592..15818)
location: region:14592-15818:-1
so has part: feature:14592-15818:-1:exon

WP_069973660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14592-15818:-1:exon

Gferi_RS27330
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27330
old locus tag: Gferi_27320
so part of: sequence
location: complement(15837..16451)
location: region:15837-16451:-1
so has part: feature:15837-16451:-1:exon
subclass of: SO_0000010

position:15837:-1
position: 15837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16451:-1
position: 16451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15837-16451:-1:exon

Gferi_RS27330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27330
old locus tag: Gferi_27320
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006570430.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine phosphatase family protein
translation: MTKLYIIRHGETVWNAETRAQGAKNIQLNEKGLLQAQHLGKRMKNYSIDAIYSSDLDRALSTAQAVAKEFQYKVNIIPELREMSFGHWEGLTNREIQEKHLTHYRIWRSKPHEAQIPGAEKLLDVQSRGLAALHRIVEENPNKNVAVVSHGTAIKAILLGLMDMDLSNFYRIRQDNACINVVEFREYGPVIVTMNDTAHLENTL
SIO_010081: Gferi_RS27330
subclass of: SO_0000673
so part of: Gferi_RS27330
location: complement(15837..16451)
location: region:15837-16451:-1
so has part: feature:15837-16451:-1:exon

WP_069973661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15837-16451:-1:exon

Gferi_RS27335
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27335
old locus tag: Gferi_27325
so part of: sequence
location: complement(16568..17875)
location: region:16568-17875:-1
so has part: feature:16568-17875:-1:exon
subclass of: SO_0000010

position:16568:-1
position: 16568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17875:-1
position: 17875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16568-17875:-1:exon

Gferi_RS27335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27335
old locus tag: Gferi_27325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013495710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Glu/Leu/Phe/Val dehydrogenase
translation: MAEKTLNPFEIAQHQVKVACDKLGADPAVYEILKNPLRTLEVSIPVRMDDGSIKTFIGFRAQHNDAPGPTKGGIRFHHDVSRDEVKALSTWMTFKCNVIGLPYGGGKGGIIVDPATLSKGELERLSRAYITAIAPIVGDRKDIPAPDVNTNGQIMSWMVDEFSKLRGYNEPGVITGKPVDFGGSLARTEATGYGVAIMARDAAKKTGLDLNGATVAIQGFGNVGSYAALYITQMGAKVIAVSDSSACIVNENGLDVKALMEYAAQNRHVKGFPGAAKEIDRSEVLTMDVDMLFPCALENQITSKNVNDIKAKIISEGANGPTTPEADEVLFKKGIVVIPDILANAGGVTVSYFEWVQNLMNYYWSFEEVQTKQEALMVKAFEEIWALKEEHKVDMRTAAYMMSIKRVATAMKLEAGTKIYSRKNNQLREIAVDCF
SIO_010081: Gferi_RS27335
subclass of: SO_0000673
so part of: Gferi_RS27335
location: complement(16568..17875)
location: region:16568-17875:-1
so has part: feature:16568-17875:-1:exon

WP_083273897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16568-17875:-1:exon

Gferi_RS27340
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27340
old locus tag: Gferi_27330
pseudo: true
so part of: sequence
location: complement(17955..18822)
location: region:17955-18822:-1
so has part: feature:17955-18822:-1:exon
subclass of: SO_0000010

position:17955:-1
position: 17955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18822:-1
position: 18822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17955-18822:-1:exon

Gferi_RS27340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27340
old locus tag: Gferi_27330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007061040.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MurR/RpiR family transcriptional regulator
SIO_010081: Gferi_RS27340
subclass of: SO_0000673
so part of: Gferi_RS27340
location: complement(17955..18822)
location: region:17955-18822:-1
so has part: feature:17955-18822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17955-18822:-1:exon

Gferi_RS27345
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27345
old locus tag: Gferi_27335
so part of: sequence
location: complement(18846..19385)
location: region:18846-19385:-1
so has part: feature:18846-19385:-1:exon
subclass of: SO_0000010

position:18846:-1
position: 18846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19385:-1
position: 19385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18846-19385:-1:exon

Gferi_RS27345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27345
old locus tag: Gferi_27335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013275999.1
GO function: GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-oxoacid:acceptor oxidoreductase family protein
translation: MSKQVEIRLTGSGGQGLILGGIIMAEAALLDGKNAIQSQSYGPEARGGASKAEVIISENEIDFPKVEVPDLLLSLTQVAADKYINDIKKDGILLVDSSVRLPEGVQAGKVIQIPILQTAVEVIGKPMVANIIAMGAIQQILNTVSKESLEEAVLSRVPKGTEELNRRALAEGYRLVEKY
SIO_010081: Gferi_RS27345
subclass of: SO_0000673
so part of: Gferi_RS27345
location: complement(18846..19385)
location: region:18846-19385:-1
so has part: feature:18846-19385:-1:exon

WP_069973664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18846-19385:-1:exon

Gferi_RS27350
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27350
old locus tag: Gferi_27340
pseudo: true
so part of: sequence
location: complement(19387..20205)
location: region:19387-20205:-1
so has part: feature:19387-20205:-1:exon
subclass of: SO_0000010

position:19387:-1
position: 19387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20205:-1
position: 20205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19387-20205:-1:exon

Gferi_RS27350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27350
old locus tag: Gferi_27340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012063759.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 2-oxoacid:ferredoxin oxidoreductase subunit beta
SIO_010081: Gferi_RS27350
subclass of: SO_0000673
so part of: Gferi_RS27350
location: complement(19387..20205)
location: region:19387-20205:-1
so has part: feature:19387-20205:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19387-20205:-1:exon

Gferi_RS27355
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27355
old locus tag: Gferi_27345
pseudo: true
so part of: sequence
location: complement(20190..21343)
location: region:20190-21343:-1
so has part: feature:20190-21343:-1:exon
subclass of: SO_0000010

position:20190:-1
position: 20190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21343:-1
position: 21343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20190-21343:-1:exon

Gferi_RS27355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27355
old locus tag: Gferi_27345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013361686.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 2-oxoacid:acceptor oxidoreductase subunit alpha
SIO_010081: Gferi_RS27355
subclass of: SO_0000673
so part of: Gferi_RS27355
location: complement(20190..21343)
location: region:20190-21343:-1
so has part: feature:20190-21343:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20190-21343:-1:exon

Gferi_RS27360
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
gene: surE
locus tag: Gferi_RS27360
old locus tag: Gferi_27350
pseudo: true
so part of: sequence
location: complement(21746..22506)
location: region:21746-22506:-1
so has part: feature:21746-22506:-1:exon
subclass of: SO_0000010

position:21746:-1
position: 21746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22506:-1
position: 22506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21746-22506:-1:exon

Gferi_RS27360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
gene: surE
locus tag: Gferi_RS27360
old locus tag: Gferi_27350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015311576.1
GO function: GO:0008252 - nucleotidase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 5'/3'-nucleotidase SurE
SIO_010081: Gferi_RS27360
subclass of: SO_0000673
so part of: Gferi_RS27360
location: complement(21746..22506)
location: region:21746-22506:-1
so has part: feature:21746-22506:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21746-22506:-1:exon

Gferi_RS27365
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27365
old locus tag: Gferi_27355
pseudo: true
so part of: sequence
location: 22620..23266
location: region:22620-23266:1
so has part: feature:22620-23266:1:exon
subclass of: SO_0000010

position:22620:1
position: 22620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23266:1
position: 23266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22620-23266:1:exon

Gferi_RS27365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27365
old locus tag: Gferi_27355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006310337.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: Gferi_RS27365
subclass of: SO_0000673
so part of: Gferi_RS27365
location: 22620..23266
location: region:22620-23266:1
so has part: feature:22620-23266:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22620-23266:1:exon

Gferi_RS27245
type: Gene
subclass of: SO_0000704
RO_0002162: 1424294
locus tag: Gferi_RS27245
old locus tag: Gferi_27235
pseudo: true
so part of: sequence
location: complement(23291..>24587)
location: region:23291-24587:-1
so has part: feature:23291-24587:-1:exon
subclass of: SO_0000010

position:23291:-1
position: 23291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24587:-1
position: 24587
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23291-24587:-1:exon

Gferi_RS27245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1424294
locus tag: Gferi_RS27245
old locus tag: Gferi_27235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003870653.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: oxaloacetate decarboxylase subunit alpha
SIO_010081: Gferi_RS27245
subclass of: SO_0000673
so part of: Gferi_RS27245
location: complement(23291..>24587)
location: region:23291-24587:-1
so has part: feature:23291-24587:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23291-24587:-1:exon