Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence.
type: Entry
definition: Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence.
sequence version: NZ_LN898145.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_LN898145.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA3608370
keyword: RefSeq
source: Paucilactobacillus oligofermentans DSM 15707 = LMG 22743
organism: Paucilactobacillus oligofermentans DSM 15707 = LMG 22743
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Paucilactobacillus.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLN898145.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:08:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,851\nCDSs (total) :: 1,779\nGenes (coding) :: 1,756\nCDSs (with protein) :: 1,756\nGenes (RNA) :: 72\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 13 of 23\nPseudo Genes (incomplete) :: 11 of 23\nPseudo Genes (internal stop) :: 4 of 23\nPseudo Genes (multiple problems) :: 4 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 43810
topology: circular
so has quality: SO_0000988
location: 1..43810
location: region:1-43810:1
RO_0002162: 1423778

NZ_LN898145
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA3608370
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Andreevskaya, M.
journal: Submitted (14-OCT-2015) UNIVERSITY OF HELSINKI, DNA sequencing and Genomics, Viikinkaari 9, 00014, Helsinki, Institute of Biotechnology, Finland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43810:1
position: 43810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-43810:1:source
so part of: sequence
organism: Paucilactobacillus oligofermentans DSM 15707 = LMG 22743
mol type: genomic DNA
isolate: LACOL
plasmid: II

1423778
type: Taxonomy
SIO_000068: taxonomy

LACOL_RS08895
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08895
old locus tag: LACOL_1723
so part of: sequence
location: join(43810,1..833)
location: region:1-43810:1
so has part: feature:43810-43810:1:exon
so has part: feature:1-833:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:43810-43810:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-833:1:exon

position:833:1
position: 833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LACOL_RS08895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08895
old locus tag: LACOL_1723
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQATANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
SIO_010081: LACOL_RS08895
subclass of: SO_0000673
so part of: LACOL_RS08895
location: join(43810,1..833)
location: region:1-43810:1
so has part: feature:43810-43810:1:exon
so has part: feature:1-833:1:exon

WP_244912521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43810-43810:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-833:1:exon

LACOL_RS08900
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08900
old locus tag: LACOL_1724
so part of: sequence
location: complement(1033..1272)
location: region:1033-1272:-1
so has part: feature:1033-1272:-1:exon
subclass of: SO_0000010

position:1033:-1
position: 1033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1272:-1
position: 1272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1033-1272:-1:exon

LACOL_RS08900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08900
old locus tag: LACOL_1724
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011669001.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPEKKSLLDQLNVKDKLENRDSPFAKDEKTKPLRIRESKYDLVNVISFKTGTKKVDVLDNILEAGIKQLKLREQYKDEL
SIO_010081: LACOL_RS08900
subclass of: SO_0000673
so part of: LACOL_RS08900
location: complement(1033..1272)
location: region:1033-1272:-1
so has part: feature:1033-1272:-1:exon

WP_057889455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1033-1272:-1:exon

LACOL_RS08905
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08905
old locus tag: LACOL_1725
so part of: sequence
location: complement(1272..2063)
location: region:1272-2063:-1
so has part: feature:1272-2063:-1:exon
subclass of: SO_0000010

position:2063:-1
position: 2063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1272-2063:-1:exon

LACOL_RS08905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08905
old locus tag: LACOL_1725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011669002.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTKIVTCNGFKGGIGKTMSNVMFSYLLAERGYKVLLVDFDPQGNAGEIIEKTYPDQIERPKVSFVDGLQKFDLTNSITKFTDNLSMLVSDWNLSMLPDMLEEYKKEERRFLLRSLLKGVKDDFDFIFIDTPPTLSDYTNNAILASDWVIAILQTQEQSYSSTLKFISYIQDLKKNYADNYEVNFDLVGVLQYLVKIDGNVDQEIIHDAKDTLGVALFHENIYQRERVKRFGRSGIANNDLWDKRALHMYTVVLDEALSRMGVK
SIO_010081: LACOL_RS08905
subclass of: SO_0000673
so part of: LACOL_RS08905
location: complement(1272..2063)
location: region:1272-2063:-1
so has part: feature:1272-2063:-1:exon

WP_057889454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1272-2063:-1:exon

LACOL_RS08910
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08910
old locus tag: LACOL_1726
pseudo: true
so part of: sequence
location: <3166..3507
location: region:3166-3507:1
so has part: feature:3166-3507:1:exon
subclass of: SO_0000010

position:3166:1
position: 3166
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3507:1
position: 3507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3166-3507:1:exon

LACOL_RS08910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08910
old locus tag: LACOL_1726
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010014842.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiation protein
SIO_010081: LACOL_RS08910
subclass of: SO_0000673
so part of: LACOL_RS08910
location: <3166..3507
location: region:3166-3507:1
so has part: feature:3166-3507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3166-3507:1:exon

LACOL_RS08915
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08915
old locus tag: LACOL_1727
so part of: sequence
location: 3769..4050
location: region:3769-4050:1
so has part: feature:3769-4050:1:exon
subclass of: SO_0000010

position:3769:1
position: 3769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4050:1
position: 4050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3769-4050:1:exon

LACOL_RS08915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08915
old locus tag: LACOL_1727
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAVKEKKRVQVKIDKDLADDTEAVLSELGLNPTTAINMFYKRIVANGALPFNASLSEEERANLRFLKATEGTPVTEFKDAKEVADWLNDPDED
SIO_010081: LACOL_RS08915
subclass of: SO_0000673
so part of: LACOL_RS08915
location: 3769..4050
location: region:3769-4050:1
so has part: feature:3769-4050:1:exon

WP_002819873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3769-4050:1:exon

LACOL_RS09275
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09275
old locus tag: LACOL_1728
so part of: sequence
location: 4040..4546
location: region:4040-4546:1
so has part: feature:4040-4546:1:exon
subclass of: SO_0000010

position:4040:1
position: 4040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4546:1
position: 4546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4040-4546:1:exon

LACOL_RS09275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09275
old locus tag: LACOL_1728
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTNDLVSLYVSFVETNGGKSRPILIRRVSEQTVEAFKITSQYEKKSAYIKQQYYPIQDWQSAGLKKPSWVDLGNIYRFPKAGLNFKEIGHLSKLDQNKISDFTLDLKSKRRGKGQKIIQQRSSKRKHKESKAELTQRIQKQLKDFAKHNPEIKPKNNPENKNDRPSY
SIO_010081: LACOL_RS09275
subclass of: SO_0000673
so part of: LACOL_RS09275
location: 4040..4546
location: region:4040-4546:1
so has part: feature:4040-4546:1:exon

WP_039107120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4040-4546:1:exon

LACOL_RS08925
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08925
old locus tag: LACOL_1729
so part of: sequence
location: complement(4536..4814)
location: region:4536-4814:-1
so has part: feature:4536-4814:-1:exon
subclass of: SO_0000010

position:4536:-1
position: 4536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4814:-1
position: 4814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4536-4814:-1:exon

LACOL_RS08925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08925
old locus tag: LACOL_1729
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQDRKARSRRLIQKGALLEKYFQADNLSVEQTEELLKTFADYVNAHKPDKLKNDQPNN
SIO_010081: LACOL_RS08925
subclass of: SO_0000673
so part of: LACOL_RS08925
location: complement(4536..4814)
location: region:4536-4814:-1
so has part: feature:4536-4814:-1:exon

WP_057889452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4536-4814:-1:exon

LACOL_RS08930
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08930
old locus tag: LACOL_1730
so part of: sequence
location: complement(4837..5046)
location: region:4837-5046:-1
so has part: feature:4837-5046:-1:exon
subclass of: SO_0000010

position:4837:-1
position: 4837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5046:-1
position: 5046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4837-5046:-1:exon

LACOL_RS08930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08930
old locus tag: LACOL_1730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013729135.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQISLEKQEAKLKQLNQKIKAEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKRFSEFLKVKPVDH
SIO_010081: LACOL_RS08930
subclass of: SO_0000673
so part of: LACOL_RS08930
location: complement(4837..5046)
location: region:4837-5046:-1
so has part: feature:4837-5046:-1:exon

WP_057889451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4837-5046:-1:exon

LACOL_RS08935
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08935
old locus tag: LACOL_1731
so part of: sequence
location: complement(5328..5693)
location: region:5328-5693:-1
so has part: feature:5328-5693:-1:exon
subclass of: SO_0000010

position:5328:-1
position: 5328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5693:-1
position: 5693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5328-5693:-1:exon

LACOL_RS08935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08935
old locus tag: LACOL_1731
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015083018.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLDFKSNKYDLFDDWHQNKTKQEFTQKLQQQAQIEKTHLPKLLSREDLKIRWQMNSRQSIHQVASKPDFPQPVFAFNHGKTPLYLATEIQIFEINHPWVITPSARLAYSHWILRNVIDQS
SIO_010081: LACOL_RS08935
subclass of: SO_0000673
so part of: LACOL_RS08935
location: complement(5328..5693)
location: region:5328-5693:-1
so has part: feature:5328-5693:-1:exon

WP_057889450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5328-5693:-1:exon

LACOL_RS08940
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08940
old locus tag: LACOL_1732
so part of: sequence
location: complement(5706..6293)
location: region:5706-6293:-1
so has part: feature:5706-6293:-1:exon
subclass of: SO_0000010

position:5706:-1
position: 5706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6293:-1
position: 6293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5706-6293:-1:exon

LACOL_RS08940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08940
old locus tag: LACOL_1732
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTVFQVGKATLLRVSDVMRLKQADIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHRLASEWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMNLLNHSSEAMTLAYLGLDQASTETMLDKIDFG
SIO_010081: LACOL_RS08940
subclass of: SO_0000673
so part of: LACOL_RS08940
location: complement(5706..6293)
location: region:5706-6293:-1
so has part: feature:5706-6293:-1:exon

WP_112278730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5706-6293:-1:exon

LACOL_RS08945
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08945
old locus tag: LACOL_1733
so part of: sequence
location: 6370..6648
location: region:6370-6648:1
so has part: feature:6370-6648:1:exon
subclass of: SO_0000010

position:6370:1
position: 6370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6648:1
position: 6648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6370-6648:1:exon

LACOL_RS08945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08945
old locus tag: LACOL_1733
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MTLALTQSDFRANLKKYLDQVNDEDETVYIARSNSRAVAIVSQEKMDWLERALKAKEGSLEYAIARDQLIKRHVLPDDEIVESNDDYWGQFK
SIO_010081: LACOL_RS08945
subclass of: SO_0000673
so part of: LACOL_RS08945
location: 6370..6648
location: region:6370-6648:1
so has part: feature:6370-6648:1:exon

WP_002834561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6370-6648:1:exon

LACOL_RS08950
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08950
old locus tag: LACOL_1734
so part of: sequence
location: 6648..7004
location: region:6648-7004:1
so has part: feature:6648-7004:1:exon
subclass of: SO_0000010

position:7004:1
position: 7004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6648-7004:1:exon

LACOL_RS08950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08950
old locus tag: LACOL_1734
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MKKLRFKPRATFNADLKRLASLDKSIIEEVRAAIDLFLEQQQLPPEFEDHELNRRMSGYNEFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLFPGQNRSKRYRKNNE
SIO_010081: LACOL_RS08950
subclass of: SO_0000673
so part of: LACOL_RS08950
location: 6648..7004
location: region:6648-7004:1
so has part: feature:6648-7004:1:exon

WP_112278731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6648-7004:1:exon

LACOL_RS08955
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08955
old locus tag: LACOL_1735
so part of: sequence
location: 7320..8576
location: region:7320-8576:1
so has part: feature:7320-8576:1:exon
subclass of: SO_0000010

position:7320:1
position: 7320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8576:1
position: 8576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7320-8576:1:exon

LACOL_RS08955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08955
old locus tag: LACOL_1735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018779230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: adenine-specific methyltransferase EcoRI family protein
translation: MANANLTNARKAKNDEFYTQWADIEKEVNAYLEFDENVFRDKTILLPADDPFESNFFKYFATHFNDFGLKKLIATSYDPSPIVNTQLELSLFDDNNEQDVGMTRKISRAYRIELTDVSDFDENGRINIDDVEAKLLAEKKHIDKGKKSKILGYLTGDESVGGYSAGDFRSAEVTKLRDEADMIITNPPFSLFREFLSWANPLEKRILVIGNMNAITYKEVFPLIKDNKFWIGATNFNVGMYFYVPEGFQYSKTYKFDREKNGKPANRVPGTGWFTNIDHGRRHQPLSLMTMEDNIKFSKHTQVQGREYDKYDNYDAIEIPYTDSIPSDYDGVMGVPISFLDKYNPDQFEILGGDGFGDTPPTKTYSHKAKVVDGKRMKSQTGTMGAVIRQDAFGKGTFFDVGYPVKAVYKRIFIKKRS
SIO_010081: LACOL_RS08955
subclass of: SO_0000673
so part of: LACOL_RS08955
location: 7320..8576
location: region:7320-8576:1
so has part: feature:7320-8576:1:exon

WP_057889474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7320-8576:1:exon

LACOL_RS08960
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08960
old locus tag: LACOL_1736
so part of: sequence
location: 8650..9834
location: region:8650-9834:1
so has part: feature:8650-9834:1:exon
subclass of: SO_0000010

position:8650:1
position: 8650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9834:1
position: 9834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8650-9834:1:exon

LACOL_RS08960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08960
old locus tag: LACOL_1736
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002338252.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MKTELVQYTVSELVKGFQYNEYEGKGLFGLSGRLTIQPEYQRNYIYADGKRDVAVIQSMLKGYPTGLYYFNVIDANQHILEILDGQQRVTSIGRFVTGKFAIKDINGNETTFSGLSLDQQDLIRNTKLLVYETNGLESEIKEWFKTINISGIPLNQQEIRNAIYSGPFITKAKEEFSNSQNANIQKWSAYIKGSPLRQEILEEALNWISTSQNISIDEYMSTHRKDDNLNELKMYFNAVIDWASTVFPVVEREMRGLEWGRLYETYHKQSYNPQTVSTELSKLYEDADISKKSGVFEYILSGQKPKFIKLLSIRAFSETDKRTIYKQQTTVSQSAGVSNCSYCVNDTEYNHMTHIWTFKEMEGDHITPWSKGGKTEIANLQMLCKHHNGMKTNN
SIO_010081: LACOL_RS08960
subclass of: SO_0000673
so part of: LACOL_RS08960
location: 8650..9834
location: region:8650-9834:1
so has part: feature:8650-9834:1:exon

WP_057889475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8650-9834:1:exon

LACOL_RS09335
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09335
pseudo: true
so part of: sequence
location: complement(<9785..9997)
location: region:9785-9997:-1
so has part: feature:9785-9997:-1:exon
subclass of: SO_0000010

position:9785:-1
position: 9785
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:9997:-1
position: 9997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9785-9997:-1:exon

LACOL_RS09335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: LACOL_RS09335
subclass of: SO_0000673
so part of: LACOL_RS09335
location: complement(<9785..9997)
location: region:9785-9997:-1
so has part: feature:9785-9997:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9785-9997:-1:exon

LACOL_RS08970
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08970
old locus tag: LACOL_1738
so part of: sequence
location: 10101..10379
location: region:10101-10379:1
so has part: feature:10101-10379:1:exon
subclass of: SO_0000010

position:10101:1
position: 10101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10379:1
position: 10379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10101-10379:1:exon

LACOL_RS08970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08970
old locus tag: LACOL_1738
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSNTIIKNKTISTRVTPDISERAKANLAKQGLTVSEYIRLSLVKAANNEVRLVSFLDSPEALAAKKEAETGQVKNIGSLTDFEDWIDKLDAN
SIO_010081: LACOL_RS08970
subclass of: SO_0000673
so part of: LACOL_RS08970
location: 10101..10379
location: region:10101-10379:1
so has part: feature:10101-10379:1:exon

WP_003625288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10101-10379:1:exon

LACOL_RS08975
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08975
old locus tag: LACOL_1739
so part of: sequence
location: 10369..10671
location: region:10369-10671:1
so has part: feature:10369-10671:1:exon
subclass of: SO_0000010

position:10369:1
position: 10369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10671:1
position: 10671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10369-10671:1:exon

LACOL_RS08975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08975
old locus tag: LACOL_1739
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQIKQTKSFERELKKLVKKHFPITVLKPCLEAIVEQDVLVLKQIKDHALKGNWRGYREFHPARYGNYGKNYDNWIVIYQLDHDELILLLVATGSHEILNQ
SIO_010081: LACOL_RS08975
subclass of: SO_0000673
so part of: LACOL_RS08975
location: 10369..10671
location: region:10369-10671:1
so has part: feature:10369-10671:1:exon

WP_005917927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10369-10671:1:exon

LACOL_RS08980
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08980
so part of: sequence
location: 10814..11080
location: region:10814-11080:1
so has part: feature:10814-11080:1:exon
subclass of: SO_0000010

position:10814:1
position: 10814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11080:1
position: 11080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10814-11080:1:exon

LACOL_RS08980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHHFFIAIDYIIGHLAIENEDFKLRQSKYYENSKKRKERSRRLIQKGALLEKYFECEHLSIEDTESLLKMFAHVVNEQKPEKWKKEND
SIO_010081: LACOL_RS08980
subclass of: SO_0000673
so part of: LACOL_RS08980
location: 10814..11080
location: region:10814-11080:1
so has part: feature:10814-11080:1:exon

WP_083478609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10814-11080:1:exon

LACOL_RS08985
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08985
old locus tag: LACOL_1740
so part of: sequence
location: complement(11119..11724)
location: region:11119-11724:-1
so has part: feature:11119-11724:-1:exon
subclass of: SO_0000010

position:11119:-1
position: 11119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11724:-1
position: 11724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11119-11724:-1:exon

LACOL_RS08985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08985
old locus tag: LACOL_1740
inference: COORDINATES: protein motif:HMM:NF024252.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKGDIMEIGKRIREYRKIYNLSQEQLADKIFVSRQTVSNWENNKTYPDIQIIVSLSILFNVSLDELIREDLEEMKMKISNNKANKRADIYSLIMICSTILASLSIGLVVALPESKFIWIVPVTLFLPALWSSFVLEKFKRNNDLKTYKEILAFSQNKDVEVLRKKRDARRTRIEKGIIVLGYAGLTLLICLMAIFIANFFK
SIO_010081: LACOL_RS08985
subclass of: SO_0000673
so part of: LACOL_RS08985
location: complement(11119..11724)
location: region:11119-11724:-1
so has part: feature:11119-11724:-1:exon

WP_083478608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11119-11724:-1:exon

LACOL_RS08995
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS08995
old locus tag: LACOL_1742
so part of: sequence
location: complement(12042..12569)
location: region:12042-12569:-1
so has part: feature:12042-12569:-1:exon
subclass of: SO_0000010

position:12042:-1
position: 12042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12569:-1
position: 12569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12042-12569:-1:exon

LACOL_RS08995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS08995
old locus tag: LACOL_1742
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511575.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepB
translation: MPKTIRELADELKVSKQTIQYHYQRLPTKNQQKDSQGTNMISPTAERIIRDKVSKPLVAKNQQTGSKKATKTSKENNELIATLRGEVADLKSQRDQQLVTKDQQISSKDRQIDHLTKLVDQQQRLALQDKKLLEEYKAENDNLKALNMPSQDTKEVQNEVEETTEPLRKWWQIWK
SIO_010081: LACOL_RS08995
subclass of: SO_0000673
so part of: LACOL_RS08995
location: complement(12042..12569)
location: region:12042-12569:-1
so has part: feature:12042-12569:-1:exon

WP_057889466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12042-12569:-1:exon

LACOL_RS09000
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09000
old locus tag: LACOL_1743
so part of: sequence
location: complement(12562..13497)
location: region:12562-13497:-1
so has part: feature:12562-13497:-1:exon
subclass of: SO_0000010

position:12562:-1
position: 12562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13497:-1
position: 13497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12562-13497:-1:exon

LACOL_RS09000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09000
old locus tag: LACOL_1743
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNELIKYDPELNTIPLRKFTPIEMNLFFSIISRMRDKGDQTVRFSFEQLKDLSNYKPTANNRFEDDIQRTYEKLMGLHFGRRSKSGLNREMFVMFTKFRIVGETDSPYIDIEVYKDALPLLNNLDTWVRYALAEFRDLRSSYAKTAFRLLKGFRTTGYAFLSKEDFFELLDIPKSYWKKPGDVDRYVLKPIREELTPLFRGLTVRKKYGKGRGKPVIGYSFTWKSEKKNANDFSQGQIQDERQKLFNIQHNGELTEQEKWRAIDKVKGLTLGSTEKQALADKQAEHDKKIRDQARQEALAELRKGFGNHA
SIO_010081: LACOL_RS09000
subclass of: SO_0000673
so part of: LACOL_RS09000
location: complement(12562..13497)
location: region:12562-13497:-1
so has part: feature:12562-13497:-1:exon

WP_057889469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12562-13497:-1:exon

LACOL_RS09005
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09005
so part of: sequence
location: complement(14193..14414)
location: region:14193-14414:-1
so has part: feature:14193-14414:-1:exon
subclass of: SO_0000010

position:14193:-1
position: 14193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14414:-1
position: 14414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14193-14414:-1:exon

LACOL_RS09005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLFVASVFVRIAENWSKRNRLRFKSVGIVDIQELFEASVNEPDEIKKNLYDSLYTYILQKRQEDIINRPGFVI
SIO_010081: LACOL_RS09005
subclass of: SO_0000673
so part of: LACOL_RS09005
location: complement(14193..14414)
location: region:14193-14414:-1
so has part: feature:14193-14414:-1:exon

WP_235804064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14193-14414:-1:exon

LACOL_RS09010
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09010
old locus tag: LACOL_1745
so part of: sequence
location: 14413..14883
location: region:14413-14883:1
so has part: feature:14413-14883:1:exon
subclass of: SO_0000010

position:14413:1
position: 14413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14883:1
position: 14883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14413-14883:1:exon

LACOL_RS09010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09010
old locus tag: LACOL_1745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005687891.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PH domain-containing protein
translation: MEQTGQALPATIQRIWRASAAIWALVILIAGLLLIAAWHFWHWSLWLAIGAMGFAILQLIFRLALVPYRYRFWRYNITPTAVFLQKGFFFQKNEAIPIARIQNVTLEAGPLLQWQELQQVNIETASTAHVIDGVTRPVADQLRNQILQLAQEVRNE
SIO_010081: LACOL_RS09010
subclass of: SO_0000673
so part of: LACOL_RS09010
location: 14413..14883
location: region:14413-14883:1
so has part: feature:14413-14883:1:exon

WP_057889443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14413-14883:1:exon

LACOL_RS09015
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09015
old locus tag: LACOL_1746
so part of: sequence
location: 14876..16390
location: region:14876-16390:1
so has part: feature:14876-16390:1:exon
subclass of: SO_0000010

position:14876:1
position: 14876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16390:1
position: 16390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14876-16390:1:exon

LACOL_RS09015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09015
old locus tag: LACOL_1746
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005687893.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PH domain-containing protein
translation: MNDKPKRLAPIAIPIHWLMSFIAWWPILVSGGFSILKNDMKPKEFLFWISLVLGILVLTLLWSIVHYLRFTYLVAPDGLTINSGVFIRKINHIPYGRIQTVQRRQWFFLKPLGLEQVSIETAGKESKKAEGMLAAVPTTVADAINRYRQGLTDTPTASASDPTTEGAQTEVTPAAKTPDAAYKINAHDLNQYALTSLGFIPIITGILWLVQKVQEYFPDSWYKQAEHALTGLAIYLIIALTVIVLVLGFAISYLNILQRYYHFTLDRTGNELQTSRGFFQTNTVSAQLSRVQAVRFKQSVLRQWFHLSTVQALLASSAADDEKNDDLVLMPVIRQRQALTTMQTFISWLPTAAPELEPIPTRHRWYYVRNIVLGNFGLIVLPAILASTLWLHLNWWLWLLPVGLLWLVIVALQGQYAGANAAIGIAAPDQLVIQVGETWTRQRYFVRRKDIQAMSFKQSLWMKPRKMAHLEIHIRKGNNDQSVSSRYMKADLAKRIMSWYQPLP
SIO_010081: LACOL_RS09015
subclass of: SO_0000673
so part of: LACOL_RS09015
location: 14876..16390
location: region:14876-16390:1
so has part: feature:14876-16390:1:exon

WP_057889444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14876-16390:1:exon

LACOL_RS09020
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09020
old locus tag: LACOL_1747
so part of: sequence
location: 16422..17198
location: region:16422-17198:1
so has part: feature:16422-17198:1:exon
subclass of: SO_0000010

position:16422:1
position: 16422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17198:1
position: 17198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16422-17198:1:exon

LACOL_RS09020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09020
old locus tag: LACOL_1747
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003568271.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MLLTKIEYAPPRHHSDYPFNLPWQADFHELILTRPVTILTGDNGSGKSTLLNAIAANYNAILMSGAALEDHPEYDNSRALARHLKLTWTYRTKAGFFFRADDFISFIRATRGRIKYAQTQLEHLAPQSLERLPYLNTLSAIKHLYQVDLDTLSHGQAFLALFRARLHANALYLLDEPESPLTPENQLSLLALIHTAVANGAQFIISTHSPILMAYPDAQLLALGDTLAPVHYDQINHITFLRNFLDDPQRFVYHLLND
SIO_010081: LACOL_RS09020
subclass of: SO_0000673
so part of: LACOL_RS09020
location: 16422..17198
location: region:16422-17198:1
so has part: feature:16422-17198:1:exon

WP_057889445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16422-17198:1:exon

LACOL_RS09025
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09025
pseudo: true
so part of: sequence
location: complement(17207..>17822)
location: region:17207-17822:-1
so has part: feature:17207-17822:-1:exon
subclass of: SO_0000010

position:17207:-1
position: 17207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17822:-1
position: 17822
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17207-17822:-1:exon

LACOL_RS09025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: LACOL_RS09025
subclass of: SO_0000673
so part of: LACOL_RS09025
location: complement(17207..>17822)
location: region:17207-17822:-1
so has part: feature:17207-17822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17207-17822:-1:exon

LACOL_RS09030
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09030
old locus tag: LACOL_1750
so part of: sequence
location: 17839..18324
location: region:17839-18324:1
so has part: feature:17839-18324:1:exon
subclass of: SO_0000010

position:17839:1
position: 17839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18324:1
position: 18324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17839-18324:1:exon

LACOL_RS09030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09030
old locus tag: LACOL_1750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVGISIFGALGFGLYFLFFTGVSNQWVWASVLLIIFIIITWFSKKYVDWKHGGILLVVVIAFMGACIDIQGNPLYNEPIRLVYQHLGTLKVTNIMTSINGTTGVNYYFNIVNPSGHVVKQLNMWGVALFRFIEYLVIYSILLSMLVPMFKLVRNIKLKKES
SIO_010081: LACOL_RS09030
subclass of: SO_0000673
so part of: LACOL_RS09030
location: 17839..18324
location: region:17839-18324:1
so has part: feature:17839-18324:1:exon

WP_123827745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17839-18324:1:exon

LACOL_RS09035
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09035
old locus tag: LACOL_1751
so part of: sequence
location: 18326..18835
location: region:18326-18835:1
so has part: feature:18326-18835:1:exon
subclass of: SO_0000010

position:18326:1
position: 18326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18835:1
position: 18835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18326-18835:1:exon

LACOL_RS09035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09035
old locus tag: LACOL_1751
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004225105.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ClbS/DfsB family four-helix bundle protein
translation: MRVYTNKEELITEIKQRYQKYIAEFENIPEDLRDRRTDEVDKTPSENLSYQLGWLSLLLGWEEKEKAGIEVQTPAEGYKWNNLGGLYQSFYDTYGEETLDEQIQQLDKKVIDLCAWIETLSDKELFEPEQRKWATKKAKWPLYKWIHINSVAPFTNFRTKIRKWKKIFL
SIO_010081: LACOL_RS09035
subclass of: SO_0000673
so part of: LACOL_RS09035
location: 18326..18835
location: region:18326-18835:1
so has part: feature:18326-18835:1:exon

WP_057889447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18326-18835:1:exon

LACOL_RS09040
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09040
old locus tag: LACOL_1752
pseudo: true
so part of: sequence
location: 18832..>19005
location: region:18832-19005:1
so has part: feature:18832-19005:1:exon
subclass of: SO_0000010

position:18832:1
position: 18832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19005:1
position: 19005
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18832-19005:1:exon

LACOL_RS09040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09040
old locus tag: LACOL_1752
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004909423.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LACOL_RS09040
subclass of: SO_0000673
so part of: LACOL_RS09040
location: 18832..>19005
location: region:18832-19005:1
so has part: feature:18832-19005:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18832-19005:1:exon

LACOL_RS09045
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09045
old locus tag: LACOL_1753
pseudo: true
so part of: sequence
location: complement(<19005..19178)
location: region:19005-19178:-1
so has part: feature:19005-19178:-1:exon
subclass of: SO_0000010

position:19005:-1
position: 19005
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:19178:-1
position: 19178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19005-19178:-1:exon

LACOL_RS09045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09045
old locus tag: LACOL_1753
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LACOL_RS09045
subclass of: SO_0000673
so part of: LACOL_RS09045
location: complement(<19005..19178)
location: region:19005-19178:-1
so has part: feature:19005-19178:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19005-19178:-1:exon

LACOL_RS09050
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09050
old locus tag: LACOL_1754
so part of: sequence
location: complement(19524..20111)
location: region:19524-20111:-1
so has part: feature:19524-20111:-1:exon
subclass of: SO_0000010

position:19524:-1
position: 19524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20111:-1
position: 20111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19524-20111:-1:exon

LACOL_RS09050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09050
old locus tag: LACOL_1754
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFNAGRRNYTVFQVGKATLLRVSDVMRLKQTDIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHRLASEWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTESMLDQIDFG
SIO_010081: LACOL_RS09050
subclass of: SO_0000673
so part of: LACOL_RS09050
location: complement(19524..20111)
location: region:19524-20111:-1
so has part: feature:19524-20111:-1:exon

WP_112278732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19524-20111:-1:exon

LACOL_RS09055
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09055
old locus tag: LACOL_1755
so part of: sequence
location: 20190..20468
location: region:20190-20468:1
so has part: feature:20190-20468:1:exon
subclass of: SO_0000010

position:20190:1
position: 20190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20468:1
position: 20468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20190-20468:1:exon

LACOL_RS09055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09055
old locus tag: LACOL_1755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MTLALTQSDFRANLKKYLDQVNDEDETVYIARSNSRAVAIVSQEKMDWLERALKAKEGSLEYAIARDQLIKRHVLPDDEIVESDDDYWGQFK
SIO_010081: LACOL_RS09055
subclass of: SO_0000673
so part of: LACOL_RS09055
location: 20190..20468
location: region:20190-20468:1
so has part: feature:20190-20468:1:exon

WP_003586674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20190-20468:1:exon

LACOL_RS09060
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09060
old locus tag: LACOL_1756
so part of: sequence
location: 20468..20824
location: region:20468-20824:1
so has part: feature:20468-20824:1:exon
subclass of: SO_0000010

position:20824:1
position: 20824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20468-20824:1:exon

LACOL_RS09060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09060
old locus tag: LACOL_1756
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MKKLRFKPRATFNADLKRLASLDKSIIDEVRAAIDLLLEQQQLPPEFEDHELNRRMSGYNEFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLFPGQNRSKRYRKNDE
SIO_010081: LACOL_RS09060
subclass of: SO_0000673
so part of: LACOL_RS09060
location: 20468..20824
location: region:20468-20824:1
so has part: feature:20468-20824:1:exon

WP_002834562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20468-20824:1:exon

LACOL_RS09065
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09065
old locus tag: LACOL_1757
so part of: sequence
location: complement(21395..22075)
location: region:21395-22075:-1
so has part: feature:21395-22075:-1:exon
subclass of: SO_0000010

position:21395:-1
position: 21395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22075:-1
position: 22075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21395-22075:-1:exon

LACOL_RS09065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09065
old locus tag: LACOL_1757
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014294397.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MREEKLALEHVTKQFGQKTNLVTALEDVSLAFKAGEVSLIIGPSGSGKSTLLTILGGLQTPTDGSVRLNGHDISDLSTKEAEKTRLEQIGFVLQAYNLVPYLTVADQFKLVDQVKPNNNLSQDGFDKIIETLGIQKLLNKYPGELSGGQQQRVAIARALYTDPAIILADEPTAALDTARVKEVGQLFANIAHDEEKAVVIVTHDDRLREFSDNVYKIVDGKLSNTD
SIO_010081: LACOL_RS09065
subclass of: SO_0000673
so part of: LACOL_RS09065
location: complement(21395..22075)
location: region:21395-22075:-1
so has part: feature:21395-22075:-1:exon

WP_046811108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21395-22075:-1:exon

LACOL_RS09070
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09070
old locus tag: LACOL_1758
so part of: sequence
location: complement(22080..23132)
location: region:22080-23132:-1
so has part: feature:22080-23132:-1:exon
subclass of: SO_0000010

position:22080:-1
position: 22080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23132:-1
position: 23132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22080-23132:-1:exon

LACOL_RS09070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09070
old locus tag: LACOL_1758
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003608391.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MFLAIREIKKEKLRYGLILTVVVLISYLIFILSALALGLATANTAAVDSWQSKSFVMTKDANGNAGQSLLTTKQVDQLSDDKTATLGITPVNMKIGGKRESAQFVGMNNDEYISKNLQLTKGHLPKAANEVVLADSVDKDIYGMGDKISIGLSDTKYKIVGYAKNATYNTAPVIYGALAQWRVIKGVSDQFQGSVVTSKTSQSVDDKALKTYSYQAFINKLPGYTPQKATFGLMIGFLIVISLIVITIFLYILTVQKLPNLAVLRAQGIPNRFLAQNTLFETFFIMATGIVVGAVLSALTEFGIPDSVPMAFDWGLMGLIAAGLMVTGLLGAIIPIRVISKIDPVSVIGG
SIO_010081: LACOL_RS09070
subclass of: SO_0000673
so part of: LACOL_RS09070
location: complement(22080..23132)
location: region:22080-23132:-1
so has part: feature:22080-23132:-1:exon

WP_057889473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22080-23132:-1:exon

LACOL_RS09075
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09075
old locus tag: LACOL_1760
so part of: sequence
location: 23258..24327
location: region:23258-24327:1
so has part: feature:23258-24327:1:exon
subclass of: SO_0000010

position:23258:1
position: 23258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24327:1
position: 24327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23258-24327:1:exon

LACOL_RS09075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09075
old locus tag: LACOL_1760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558186.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MVTRYEEDLKKSIVEMVKAGRRSDELSKEYGPSADSIRNWVKGAKSVELEDGTEVTSKEFKQLQRENQRLKEELEIFKSCGGVTGKALGRINCLVFIEDQLLRHRLSIILSALKLPRSTYYHWKRYQPSQHERVDNQLKEKIELIWENNYRAYGYPRITMVLRKSGICVGSKRILRLMREMEIHSLMNRRFKKPGTHVDHSQRPNLIKHQPNARIWRADITYLELRPGTWVYLSSIYEPKVHQVLAFKIGRQMEATLVVETINQALECHQKPQYFHSDMGSQYTSNEVETLLERHQISHSYSKQGYPYDNGPIEAFHSLLKREFAFQTTFSNFEDLVIRTSNYISWFNSDRIRTSV
SIO_010081: LACOL_RS09075
subclass of: SO_0000673
so part of: LACOL_RS09075
location: join(23258..23486,23486..24327)
location: region:23258-24327:1
so has part: feature:23258-23486:1:exon
so has part: feature:23486-24327:1:exon

WP_112278733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23258-23486:1:exon

position:23486:1
position: 23486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23486-24327:1:exon

LACOL_RS09080
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09080
old locus tag: LACOL_1762
so part of: sequence
location: 24563..24841
location: region:24563-24841:1
so has part: feature:24563-24841:1:exon
subclass of: SO_0000010

position:24563:1
position: 24563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24841:1
position: 24841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24563-24841:1:exon

LACOL_RS09080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09080
old locus tag: LACOL_1762
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSNTIIKNKTISTRVTPDISERAKANLAKQGLTVSEYIRLSLVKAANNEVRLVSFLDSPEALAAKKEAETGQVKNIGSLTDFEDWIDKLDAN
SIO_010081: LACOL_RS09080
subclass of: SO_0000673
so part of: LACOL_RS09080
location: 24563..24841
location: region:24563-24841:1
so has part: feature:24563-24841:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24563-24841:1:exon

LACOL_RS09085
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09085
old locus tag: LACOL_1763
so part of: sequence
location: 24831..25133
location: region:24831-25133:1
so has part: feature:24831-25133:1:exon
subclass of: SO_0000010

position:24831:1
position: 24831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25133:1
position: 25133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24831-25133:1:exon

LACOL_RS09085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09085
old locus tag: LACOL_1763
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQIKQTKSFERELKKLVKKHFPITVLKPCLEAIVEQDVLVLKQIKDHALKGNWRGYREFHPARYGNYGKNYDNWIVIYQLDHDELILLLVATGSHEILNQ
SIO_010081: LACOL_RS09085
subclass of: SO_0000673
so part of: LACOL_RS09085
location: 24831..25133
location: region:24831-25133:1
so has part: feature:24831-25133:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24831-25133:1:exon

LACOL_RS09090
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09090
old locus tag: LACOL_1764
so part of: sequence
location: complement(25249..26457)
location: region:25249-26457:-1
so has part: feature:25249-26457:-1:exon
subclass of: SO_0000010

position:25249:-1
position: 25249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26457:-1
position: 26457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25249-26457:-1:exon

LACOL_RS09090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09090
old locus tag: LACOL_1764
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003376484.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MKDNQAKYPQLRFKGFTDPWEQRKLGKMGYTFTGLSGKTKEDFGHGNAKFVTYMNVFSSPVSNSEMVENVEVDSKQHQVEYGDVFFTTSSETPQEVGMSSVWLETAENIYLNSFCFGYHPMVEFDPYYLAFMLRSPVIRKKFMLLAQGISRYNISKNKVMEMLLPVPEIVEQQKIGSFFKQLDDTITLHQRKLAMLKELKQGYLQKMFPKNGSKFPQLRFAGFADAWEQRKLTEIVNRVNKSSNSDVLPKVEFEDIVSGEGRLNKDISSKLDSRKGTLFESENILYGKLRPYLKNWLFPDFEGVALGDFWVFEATDVSVPSFDYYLIQSDDYQKVANDTSGTKMPRSDWKNVSSTDFAIPSKDEQKQIGTFFKQLDNTITLHQRKLDLLKEQKKGFLQKMFV
SIO_010081: LACOL_RS09090
subclass of: SO_0000673
so part of: LACOL_RS09090
location: complement(25249..26457)
location: region:25249-26457:-1
so has part: feature:25249-26457:-1:exon

WP_057889460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25249-26457:-1:exon

LACOL_RS09095
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09095
old locus tag: LACOL_1765
so part of: sequence
location: complement(26447..28069)
location: region:26447-28069:-1
so has part: feature:26447-28069:-1:exon
subclass of: SO_0000010

position:26447:-1
position: 26447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28069:-1
position: 28069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26447-28069:-1:exon

LACOL_RS09095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09095
old locus tag: LACOL_1765
EC number: 2.1.1.72
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603853.1
GO function: GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction-modification system subunit M
translation: MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETENVTQKYAQYMNPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNTIDLVHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQVRTIYDPAVGSGSLLLNVGQHVQDPNLVSYHGQELNTTTYNLARMNLMLHGVSYDDMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHWDNSDKRLSDPRFRDYGVLPPKSKADFAFLLHGFYHLQEQGTMGIVLPHGVLFRGAKEGKIRQKLLLDNRIDAIIGLPANIFHSTSIPTLIMILKKHKTTDDVLFIDASREFEKDKNQNKLTAANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIPRYVDTFEPEPEIDLNQIKADLKQLDQEISQNEQAFNELASQLVTTQVNDQSKPEAHNER
SIO_010081: LACOL_RS09095
subclass of: SO_0000673
so part of: LACOL_RS09095
location: complement(26447..28069)
location: region:26447-28069:-1
so has part: feature:26447-28069:-1:exon

WP_057889461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26447-28069:-1:exon

LACOL_RS09100
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09100
old locus tag: LACOL_1766
so part of: sequence
location: complement(28083..31250)
location: region:28083-31250:-1
so has part: feature:28083-31250:-1:exon
subclass of: SO_0000010

position:28083:-1
position: 28083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31250:-1
position: 31250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28083-31250:-1:exon

LACOL_RS09100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09100
old locus tag: LACOL_1766
EC number: 3.1.21.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015639662.1
GO component: GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO function: GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HsdR family type I site-specific deoxyribonuclease
translation: MLELSFEKEVVKTLTTGSNQWVERKDLYGATPDQLWANFRDKLNNNNYAKLQGHPLTDTEFNQVKRAIEVRTPYEAAKLLAAENGIGKVEVERDDAKLGTVTLELFWKADVAGGKSSYEVVRQAVRPRLAGTQDVDPDRRFDVTLLINGLPLIQLELKKATVELNQAFNQIEKYAQEGKYTGIYSLLQMFVIMTPDSTAYFANAEPDHFNKAFLFNWRTRDNHPVENGLAFTRQVLNIPMAHKMVSEYTVIDQERQSLILLRPYQIYAIEAVMHRIHDHQDGFVWHTTGSGKTLTSYKTAKLAAQDPGVDKVIFLVDRRDLDEQTTSNFSAYAANDDIAINEAQNTGDLMRKLQQNDGKVLVTSIQKLHRAVKKTQAQLATGKQSRFSKTLKQRVIFFVDEAHRSQFGKMQKEIRAAFVNSNWYGYTGTPIFNENKKQLKGDLAVTTEELFGKVCHVYNLRDALEDQAVLPFNVEHVTTIGKDTLITRALEKENQRVKARRDKQGRLLSTADEAKIQANIQAMSVKDLEETYLTPADFETDEHINQVVQYILQKGPRKTSLGHGNYNAILTTSSIEMAQRYYQAFKTAKKTTHNQLDPDWPRIAITYSLSENEDQSAHKHDQMATILKDYNQQYHTNFDLADLNLYNEDVAKRAARREAVFAHLQPDQEINLVIVVRRLLTGFDAPRLNTLFVDRTLAYQELIQAYSRTNRLQNRELKQEGQIVTFRVPAIMEANEREAYKLYSGEGSFNVIIRPTYQQAVLKFQKAVVALKAIAQTPTAADDLKGTTAKVQFVKAFRQVNQQLNSLSMYNDFTWENSEKTFGIAQTEVESYTGKYLRIKAAVTNQEPEKVPEELAALDFSLAVGSVVLVDYDYLTQLIQDWIDEQQQYSTPDQAQAHMTDYLQNSAKVQASLNKLAETQPQQAQLIREAMPYIEQQMQQFQQQSDQNQAPVALNARELVADYAQRQLVKKTSVFAHTWGLDQTAILRVAREHTVGTDEWHHEQELTQSANLAAALQAQTAAGPKIPAILPLYRIKSQAAWRQFIEHDLAIYLQK
SIO_010081: LACOL_RS09100
subclass of: SO_0000673
so part of: LACOL_RS09100
location: complement(28083..31250)
location: region:28083-31250:-1
so has part: feature:28083-31250:-1:exon

WP_057889462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28083-31250:-1:exon

LACOL_RS09110
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09110
old locus tag: LACOL_1767
pseudo: true
so part of: sequence
location: 31430..32312
location: region:31430-32312:1
so has part: feature:31430-32312:1:exon
subclass of: SO_0000010

position:31430:1
position: 31430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32312:1
position: 32312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31430-32312:1:exon

LACOL_RS09110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09110
old locus tag: LACOL_1767
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: LACOL_RS09110
subclass of: SO_0000673
so part of: LACOL_RS09110
location: 31430..32312
location: region:31430-32312:1
so has part: feature:31430-32312:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31430-32312:1:exon

LACOL_RS09195
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09195
old locus tag: LACOL_1768
so part of: sequence
location: 32342..32521
location: region:32342-32521:1
so has part: feature:32342-32521:1:exon
subclass of: SO_0000010

position:32342:1
position: 32342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32521:1
position: 32521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32342-32521:1:exon

LACOL_RS09195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09195
old locus tag: LACOL_1768
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYIYSYIIPLLNGLYESEEPDFTEQLNSYSKDLAKEIILDLIGATGIDIQEFDKLAMKL
SIO_010081: LACOL_RS09195
subclass of: SO_0000673
so part of: LACOL_RS09195
location: 32342..32521
location: region:32342-32521:1
so has part: feature:32342-32521:1:exon

WP_035446523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32342-32521:1:exon

LACOL_RS09120
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09120
old locus tag: LACOL_1769
so part of: sequence
location: complement(32983..33198)
location: region:32983-33198:-1
so has part: feature:32983-33198:-1:exon
subclass of: SO_0000010

position:32983:-1
position: 32983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33198:-1
position: 33198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32983-33198:-1:exon

LACOL_RS09120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09120
old locus tag: LACOL_1769
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CsbD family protein
translation: MSLDDKIDSTKDKVSGKAKEVEGKVTNDKAREAEGKGQGILGKAKDKLSDAKDAVKDTVDNVKEKLDKDDK
SIO_010081: LACOL_RS09120
subclass of: SO_0000673
so part of: LACOL_RS09120
location: complement(32983..33198)
location: region:32983-33198:-1
so has part: feature:32983-33198:-1:exon

WP_003680381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32983-33198:-1:exon

LACOL_RS09125
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09125
old locus tag: LACOL_1770
so part of: sequence
location: complement(33396..33536)
location: region:33396-33536:-1
so has part: feature:33396-33536:-1:exon
subclass of: SO_0000010

position:33396:-1
position: 33396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33536:-1
position: 33536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33396-33536:-1:exon

LACOL_RS09125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09125
old locus tag: LACOL_1770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003631123.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDVLKSVFKFMIASTLIVGGVLIGGTVLAAKKVDGIGDTLQQKLHG
SIO_010081: LACOL_RS09125
subclass of: SO_0000673
so part of: LACOL_RS09125
location: complement(33396..33536)
location: region:33396-33536:-1
so has part: feature:33396-33536:-1:exon

WP_003681696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33396-33536:-1:exon

LACOL_RS09130
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09130
old locus tag: LACOL_1771
so part of: sequence
location: complement(33548..33799)
location: region:33548-33799:-1
so has part: feature:33548-33799:-1:exon
subclass of: SO_0000010

position:33548:-1
position: 33548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33799:-1
position: 33799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33548-33799:-1:exon

LACOL_RS09130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09130
old locus tag: LACOL_1771
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013439000.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GlsB/YeaQ/YmgE family stress response membrane protein
translation: MGLIWSLIVGAIIGAIAGAITNRGAAMGWIANIVAGLIGAWIGQGLLGTWGPSLAGMALIPSIIGAIILVLIVSLVVGRTSKK
SIO_010081: LACOL_RS09130
subclass of: SO_0000673
so part of: LACOL_RS09130
location: complement(33548..33799)
location: region:33548-33799:-1
so has part: feature:33548-33799:-1:exon

WP_003680323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33548-33799:-1:exon

LACOL_RS09135
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09135
old locus tag: LACOL_1772
so part of: sequence
location: complement(33814..34356)
location: region:33814-34356:-1
so has part: feature:33814-34356:-1:exon
subclass of: SO_0000010

position:33814:-1
position: 33814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34356:-1
position: 34356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33814-34356:-1:exon

LACOL_RS09135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09135
old locus tag: LACOL_1772
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016371047.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Asp23/Gls24 family envelope stress response protein
translation: MQNGTPSEKTTTNEKSGIKGNLTFDDKVIQKIIGIALSEVDGLLTVDGGFFANVAEKLVNTSDVTSGIDVEVGKKQVAVDLDIVAEYGIDISKLYDKIKNVIVREVKNMTDLEVIEVNVNVVDVKTKEQHEKDSTSLQDRVSDATDKTKEAVSKGANKSKETLSDSVDKVTSDNKSSRVN
SIO_010081: LACOL_RS09135
subclass of: SO_0000673
so part of: LACOL_RS09135
location: complement(33814..34356)
location: region:33814-34356:-1
so has part: feature:33814-34356:-1:exon

WP_041095698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33814-34356:-1:exon

LACOL_RS09140
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09140
old locus tag: LACOL_1773
so part of: sequence
location: complement(34384..34569)
location: region:34384-34569:-1
so has part: feature:34384-34569:-1:exon
subclass of: SO_0000010

position:34384:-1
position: 34384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34569:-1
position: 34569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34384-34569:-1:exon

LACOL_RS09140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09140
old locus tag: LACOL_1773
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003681705.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2273 domain-containing protein
translation: MTELIKAYFWPLIGGIIGLLLAVLIITFGFLKTLFVLIFMVIGITAGYYIQKTGILTNVFK
SIO_010081: LACOL_RS09140
subclass of: SO_0000673
so part of: LACOL_RS09140
location: complement(34384..34569)
location: region:34384-34569:-1
so has part: feature:34384-34569:-1:exon

WP_041095700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34384-34569:-1:exon

LACOL_RS09145
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
gene: amaP
locus tag: LACOL_RS09145
old locus tag: LACOL_1774
so part of: sequence
location: complement(34581..35141)
location: region:34581-35141:-1
so has part: feature:34581-35141:-1:exon
subclass of: SO_0000010

position:34581:-1
position: 34581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35141:-1
position: 35141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34581-35141:-1:exon

LACOL_RS09145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
gene: amaP
locus tag: LACOL_RS09145
old locus tag: LACOL_1774
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010493334.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkaline shock response membrane anchor protein AmaP
translation: MRFIFKALIVVVIILAFPLSIVLVFKNWSTAIGTSTPMQLKFDWLDQYEPIYLFWSGIILAAVLIVLLIITLFWPRSQSLYLHQKSDGQVTISKKAIEHFALSALQHEPFIGNPKVSAKLSRKRITLKISGDLLNSVNAKKQTANFLNQLKKDLRICLGISEQKKIKIRLVDFNESDANVHQSRVV
SIO_010081: LACOL_RS09145
subclass of: SO_0000673
so part of: LACOL_RS09145
location: complement(34581..35141)
location: region:34581-35141:-1
so has part: feature:34581-35141:-1:exon

WP_041095702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34581-35141:-1:exon

LACOL_RS09300
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09300
old locus tag: LACOL_1775
so part of: sequence
location: 35789..35920
location: region:35789-35920:1
so has part: feature:35789-35920:1:exon
subclass of: SO_0000010

position:35789:1
position: 35789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35920:1
position: 35920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35789-35920:1:exon

LACOL_RS09300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09300
old locus tag: LACOL_1775
inference: COORDINATES: protein motif:HMM:NF040212.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5839 family protein
translation: MADNVLMAYHIVHDPDDWAKHVLNTKKLYKWRITEQTRGMPVI
SIO_010081: LACOL_RS09300
subclass of: SO_0000673
so part of: LACOL_RS09300
location: 35789..35920
location: region:35789-35920:1
so has part: feature:35789-35920:1:exon

WP_220096583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35789-35920:1:exon

LACOL_RS09150
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09150
old locus tag: LACOL_1776
so part of: sequence
location: 36153..39308
location: region:36153-39308:1
so has part: feature:36153-39308:1:exon
subclass of: SO_0000010

position:36153:1
position: 36153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39308:1
position: 39308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36153-39308:1:exon

LACOL_RS09150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09150
old locus tag: LACOL_1776
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012391059.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KxYKxGKxW signal peptide domain-containing protein
translation: MLRNNYFGETKTHYKLYKRGKNWAVMGISLFSLGLGMLVTGQPVSADVTATSTSSSAAKAETTSASSSSAAKAETTSASSSSAVKAETTSASSSSASKAETTSASSSSASKAETTSASSISATNAETTGASSISATNAETTGASSSSAVNADSTSAGGKQSVAQIATLAGSVTNTGFSVSDPDYPSGMWIDPDKSHYSYEWLQAKEKGKHDGNQIVLSTNRTGDGIVYVTELSPSNAVLKQYTLNQNTQVTSAVFDRTIYYNDVYFEMVQSSSNSFVTKYTASKFDNTYYNTLSYFVPKLITQTTYYVDKDGKQITDSNGNLVVAYTQKGLVGQNYTTSDVNVINGYYATAPANSNGVMSPYGEIGASYVKNFHDGVVITYTQTGSDGTMSASIAQNGRVLKTWTSIEPSDPAIMYKLGYTTYGIKNPYIPQTSDVEYVYSNLGNWVVSNPDGSTKSIIYPNDSSDPTKIADSSVPGYPVIDFLPGYTPEDHMGTPLVPVDPDDRTKGYIPPIPSDNGTDTTITYTADKQKGSVSYVDDTTGKTLKTDSISGTTGSKSSYSTSGSIADYKKQGYELVTDGYPAYLTFDNDDTTDQNFTVHLKHRLTPVNPTDPQTPGAPINPDEPDGPKWPTSTNYDKTVNETVSYVDQNGHGVAKPHTDSVNFTRTVVVDNVTGEVITSGAGTTAWTATNGDTTFDAVVSPVVPGSVADKAQTAAVTDLNADSADVNETVTYTKVGSLVPSSSDGNFPETPKVVYPNDPSDATKVTPAGVPTVPGYTAHDPEGHVLTPGSSYQPSDPTKDTTITYTADKQKGSVSYVDDTTGKTLKTDSISGTTGSKSSYSTSGSIADYKKQGYELVTDGYPADLTFDNDDTTDQNFTVHLKHQNIQSTEAKTVTETIHYQGAGNQTPADNTAQVTFTRQVSTDTVTGEKTYGSWSADQSFAAVTSPVIKGYTPDQAEIGAQTVSGDASDLDFTVIYTKDAPTKPVNPSQPTTPAKPVQAGQAAATNFVDQRLPQTGETDQQHMTLSGLLLLAMSSVLGLFGMTKRQRKE
SIO_010081: LACOL_RS09150
subclass of: SO_0000673
so part of: LACOL_RS09150
location: 36153..39308
location: region:36153-39308:1
so has part: feature:36153-39308:1:exon

WP_112278734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36153-39308:1:exon

LACOL_RS09155
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09155
old locus tag: LACOL_1777
so part of: sequence
location: 39320..39757
location: region:39320-39757:1
so has part: feature:39320-39757:1:exon
subclass of: SO_0000010

position:39320:1
position: 39320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39757:1
position: 39757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39320-39757:1:exon

LACOL_RS09155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09155
old locus tag: LACOL_1777
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010014573.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MLNHRQTKIQFESLATLQVIQKQAYQMLMQGLTTTVFSMREWGILIYLEQHGQATASELADAFMVKRTLISRNTWRLIQDNLIQSQVNQTDRRIVRLTLTTNGQETVERSVRQVQANLKTFNQSHDLEKLTKQVETLSQQLAKIN
SIO_010081: LACOL_RS09155
subclass of: SO_0000673
so part of: LACOL_RS09155
location: 39320..39757
location: region:39320-39757:1
so has part: feature:39320-39757:1:exon

WP_057889457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39320-39757:1:exon

LACOL_RS09380
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09380
old locus tag: LACOL_1778
so part of: sequence
location: 39940..40227
location: region:39940-40227:1
so has part: feature:39940-40227:1:exon
subclass of: SO_0000010

position:39940:1
position: 39940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40227:1
position: 40227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39940-40227:1:exon

LACOL_RS09380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09380
old locus tag: LACOL_1778
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: acyltransferase
translation: MLEKHCPAAMCTIYLGMLLKKWQSLKIKGDRTMNLAYKVMMNQQRSYTLRQYAVICIGTNALDDYEEQTMKIIHDLEPGHKLILMTPYNARADAD
SIO_010081: LACOL_RS09380
subclass of: SO_0000673
so part of: LACOL_RS09380
location: 39940..40227
location: region:39940-40227:1
so has part: feature:39940-40227:1:exon

WP_013650686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39940-40227:1:exon

LACOL_RS09385
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09385
old locus tag: LACOL_1779
so part of: sequence
location: 40249..40446
location: region:40249-40446:1
so has part: feature:40249-40446:1:exon
subclass of: SO_0000010

position:40249:1
position: 40249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40446:1
position: 40446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40249-40446:1:exon

LACOL_RS09385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09385
old locus tag: LACOL_1779
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERHLPAKYKFITIADWGKIAAQHPEVFKGIDGVHFGGIRAGDILYAKVINQALQVAKHSPVKED
SIO_010081: LACOL_RS09385
subclass of: SO_0000673
so part of: LACOL_RS09385
location: 40249..40446
location: region:40249-40446:1
so has part: feature:40249-40446:1:exon

WP_057889458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40249-40446:1:exon

LACOL_RS09165
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09165
pseudo: true
so part of: sequence
location: 40608..41200
location: region:40608-41200:1
so has part: feature:40608-41200:1:exon
subclass of: SO_0000010

position:40608:1
position: 40608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41200:1
position: 41200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40608-41200:1:exon

LACOL_RS09165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474630.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LACOL_RS09165
subclass of: SO_0000673
so part of: LACOL_RS09165
location: 40608..41200
location: region:40608-41200:1
so has part: feature:40608-41200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40608-41200:1:exon

LACOL_RS09170
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09170
old locus tag: LACOL_1782
so part of: sequence
location: 41792..42217
location: region:41792-42217:1
so has part: feature:41792-42217:1:exon
subclass of: SO_0000010

position:41792:1
position: 41792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42217:1
position: 42217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41792-42217:1:exon

LACOL_RS09170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09170
old locus tag: LACOL_1782
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002341371.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MEINDKKYGKKPYIVNIEEATVQNEMYRTTMWTGEKLQVTVMSIQPNDDIGLEVHHGIDQFIRIEEGNGLCKMGPTEDNLNFEQKVKDDDAVFVPADMWHNILNTGDKPLKLYTIYAGPDHIPGTIHETHDDARNDPNEQD
SIO_010081: LACOL_RS09170
subclass of: SO_0000673
so part of: LACOL_RS09170
location: 41792..42217
location: region:41792-42217:1
so has part: feature:41792-42217:1:exon

WP_057889463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41792-42217:1:exon

LACOL_RS09175
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09175
old locus tag: LACOL_1783
pseudo: true
so part of: sequence
location: 42400..>42879
location: region:42400-42879:1
so has part: feature:42400-42879:1:exon
subclass of: SO_0000010

position:42400:1
position: 42400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42879:1
position: 42879
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42400-42879:1:exon

LACOL_RS09175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09175
old locus tag: LACOL_1783
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612207.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LACOL_RS09175
subclass of: SO_0000673
so part of: LACOL_RS09175
location: 42400..>42879
location: region:42400-42879:1
so has part: feature:42400-42879:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42400-42879:1:exon

LACOL_RS09180
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09180
old locus tag: LACOL_1784
so part of: sequence
location: 42990..43277
location: region:42990-43277:1
so has part: feature:42990-43277:1:exon
subclass of: SO_0000010

position:42990:1
position: 42990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43277:1
position: 43277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42990-43277:1:exon

LACOL_RS09180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09180
old locus tag: LACOL_1784
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015638790.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
SIO_010081: LACOL_RS09180
subclass of: SO_0000673
so part of: LACOL_RS09180
location: 42990..43277
location: region:42990-43277:1
so has part: feature:42990-43277:1:exon

WP_003688751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42990-43277:1:exon

LACOL_RS09185
type: Gene
subclass of: SO_0000704
RO_0002162: 1423778
locus tag: LACOL_RS09185
old locus tag: LACOL_1785
pseudo: true
so part of: sequence
location: 43301..>43810
location: region:43301-43810:1
so has part: feature:43301-43810:1:exon
subclass of: SO_0000010

position:43301:1
position: 43301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43301-43810:1:exon

LACOL_RS09185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423778
locus tag: LACOL_RS09185
old locus tag: LACOL_1785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003680947.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: LACOL_RS09185
subclass of: SO_0000673
so part of: LACOL_RS09185
location: 43301..>43810
location: region:43301-43810:1
so has part: feature:43301-43810:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43301-43810:1:exon