Liquorilactobacillus hordei DSM 19519 plasmid unnamed.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Liquorilactobacillus.
Submitted (24-FEB-2020) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP049302.1.\nAssembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. FEB-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 106.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/23/2022 07:06:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,434\nCDSs (total) :: 2,348\nGenes (coding) :: 2,292\nCDSs (with protein) :: 2,292\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 21 of 56\nPseudo Genes (incomplete) :: 29 of 56\nPseudo Genes (internal stop) :: 9 of 56\nPseudo Genes (multiple problems) :: 3 of 56\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002824596.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017260787.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]
GO:0001558 - regulation of cell growth [Evidence IEA]
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003646106.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010896857.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014567980.1
filamentation induced by cAMP protein fic
COORDINATES: similar to AA sequence:RefSeq:WP_003691186.1
ParA superfamily DNA segregation protein PrgP
COORDINATES: similar to AA sequence:RefSeq:WP_003691188.1
COORDINATES: similar to AA sequence:RefSeq:WP_002819864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690678.1
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019901942.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020090442.1
COORDINATES: similar to AA sequence:RefSeq:WP_020090441.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011668824.1
COORDINATES: similar to AA sequence:RefSeq:WP_002823637.1
COORDINATES: protein motif:HMM:NF019342.2
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011101247.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691196.1
COORDINATES: similar to AA sequence:RefSeq:WP_005727379.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013102313.1
COORDINATES: similar to AA sequence:RefSeq:WP_013439000.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_016371047.1
Asp23/Gls24 family envelope stress response protein
COORDINATES: similar to AA sequence:RefSeq:WP_003681705.1
COORDINATES: similar to AA sequence:RefSeq:WP_010493334.1
alkaline shock response membrane anchor protein AmaP
COORDINATES: similar to AA sequence:RefSeq:WP_003559323.1
COORDINATES: similar to AA sequence:RefSeq:WP_003702126.1
COORDINATES: similar to AA sequence:RefSeq:WP_003573729.1
COORDINATES: similar to AA sequence:RefSeq:WP_003672587.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
IS30-like element ISLpl1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002821555.1
magnesium transporter CorA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003592277.1
COORDINATES: similar to AA sequence:RefSeq:WP_010491159.1
COORDINATES: similar to AA sequence:RefSeq:WP_010491161.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF015509.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010078040.1
COORDINATES: similar to AA sequence:RefSeq:WP_003616269.1
COORDINATES: similar to AA sequence:RefSeq:WP_002278189.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003554887.1
COORDINATES: similar to AA sequence:RefSeq:WP_016181640.1
COORDINATES: similar to AA sequence:RefSeq:WP_010745254.1
COORDINATES: similar to AA sequence:RefSeq:WP_003643541.1
COORDINATES: similar to AA sequence:RefSeq:WP_003643543.1
COORDINATES: similar to AA sequence:RefSeq:WP_010497319.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005720198.1
COORDINATES: similar to AA sequence:RefSeq:WP_003643025.1
COORDINATES: similar to AA sequence:RefSeq:WP_003645583.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_002375153.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016511953.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002833431.1