Liquorilactobacillus hordei DSM 19519 plasmid unnamed1.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Liquorilactobacillus.
Submitted (24-FEB-2020) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP049301.1.\nAssembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. FEB-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 106.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/23/2022 07:06:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,434\nCDSs (total) :: 2,348\nGenes (coding) :: 2,292\nCDSs (with protein) :: 2,292\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 21 of 56\nPseudo Genes (incomplete) :: 29 of 56\nPseudo Genes (internal stop) :: 9 of 56\nPseudo Genes (multiple problems) :: 3 of 56\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010078210.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010078213.1
COORDINATES: similar to AA sequence:RefSeq:WP_010078214.1
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF018653.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558186.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element IS1163 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010078236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004234393.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_010078261.1
COORDINATES: similar to AA sequence:RefSeq:WP_010078262.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019253534.1
COORDINATES: similar to AA sequence:RefSeq:WP_010078265.1
COORDINATES: protein motif:HMM:NF019096.2
NUMOD1 domain-containing DNA-binding protein
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:NF014342.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017663.2
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF021182.2
COORDINATES: similar to AA sequence:RefSeq:WP_003687010.1
COORDINATES: similar to AA sequence:RefSeq:WP_005874792.1
COORDINATES: similar to AA sequence:RefSeq:WP_004049687.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IEA]
GO:0015890 - nicotinamide mononucleotide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004846309.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013727115.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:TIGR01453.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_010078302.1
COORDINATES: similar to AA sequence:RefSeq:WP_003128640.1
COORDINATES: similar to AA sequence:RefSeq:WP_010078308.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021631.2
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007209166.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002814921.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211284.1
COORDINATES: protein motif:HMM:NF012832.2
COORDINATES: similar to AA sequence:RefSeq:WP_002593678.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: similar to AA sequence:RefSeq:WP_000683283.1
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: protein motif:HMM:NF019353.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014826.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040212.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_019253467.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691022.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691024.1
COORDINATES: similar to AA sequence:RefSeq:WP_015640668.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691027.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691029.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691030.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691033.1
COORDINATES: similar to AA sequence:RefSeq:WP_019253459.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691038.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691039.1
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003676384.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691043.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691045.1
COORDINATES: protein motif:HMM:NF022236.2
COORDINATES: similar to AA sequence:RefSeq:WP_003691047.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691049.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691052.1
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003691054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006501058.1
COORDINATES: similar to AA sequence:RefSeq:WP_010078207.1
COORDINATES: similar to AA sequence:RefSeq:WP_010078208.1
COORDINATES: similar to AA sequence:RefSeq:WP_019253581.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.