Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence.
type: Entry
definition: Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence.
sequence version: NZ_AP012545.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_AP012545.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061035
keyword: RefSeq
source: Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393
organism: Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus.
reference: 1
references: 24116025
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP012545.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: phrap v. 0.990329\nGenome Coverage :: 5.9x\nSequencing Technology :: 3730xl\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:01:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,882\nCDSs (total) :: 2,805\nGenes (coding) :: 2,646\nCDSs (with protein) :: 2,646\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 159\nCDSs (without protein) :: 159\nPseudo Genes (ambiguous residues) :: 0 of 159\nPseudo Genes (frameshifted) :: 60 of 159\nPseudo Genes (incomplete) :: 69 of 159\nPseudo Genes (internal stop) :: 36 of 159\nPseudo Genes (multiple problems) :: 6 of 159\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 26706
topology: circular
so has quality: SO_0000988
location: 1..26706
location: region:1-26706:1
RO_0002162: 1423732

NZ_AP012545
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061035
type: BioSample
SIO_000068: biosample

1
title: Genomic adaptation of the Lactobacillus casei group
author: Toh, H.
author: Oshima, K.
author: Nakano, A.
author: Takahata, M.
author: Murakami, M.
author: Takaki, T.
author: Nishiyama, H.
author: Igimi, S.
author: Hattori, M.
author: Morita, H.
journal: PLoS One 8 (10), e75073 (2013)
pubmed: 24116025
comments: DOI:10.1371/journal.pone.0075073 Publication Status: Online-Only

24116025
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Toh, H.
author: Oshima, K.
author: Hattori, M.
author: Morita, H.
journal: Submitted (27-AUG-2012) Contact:Hidetoshi Morita Azabu University, School of Veterinary Medicine; 1-17-71 Fuchinobe, Sagamihara, Kanagawa 252-5201, Japan URL :http://www.azabu-u.ac.jp/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26706:1
position: 26706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26706:1:source
so part of: sequence
organism: Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393
mol type: genomic DNA
strain: ATCC 393
type material: type strain of Lactobacillus casei
plasmid: pLBCZ-1

1423732
type: Taxonomy
SIO_000068: taxonomy

LBCZ_RS14110
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14110
old locus tag: LBCZ_P1-0001
so part of: sequence
location: 100..1581
location: region:100-1581:1
so has part: feature:100-1581:1:exon
subclass of: SO_0000010

45549993
type: Gene
SIO_000068: ncbigene

position:100:1
position: 100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1581:1
position: 1581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100-1581:1:exon

LBCZ_RS14110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14110
old locus tag: LBCZ_P1-0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016368703.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: primase C-terminal domain-containing protein
translation: MRKTDAADAIKTILGETLSTRRYKRSALVPDGMARKSGAVFVCWSKDLLRAAQGVVMTSQEAVLDADGASHWTPNVFRYGTYERRGAKFGTIRGHVEKNLKAITTFVVDVDYPAGEKPDYADFDSSCFTIRHGAVLFEPTYILSTPHGYQAYYVMAAPVWIRRSGDGRYPALASAKHVSQAIRAAVAAQNPYTDTGANDFGFFRLPLSDNLVEVDEDARPAFAVLQAWSMSVEGQQQTKPTKLVSDQVHTQWFEALTQAQVPCAQGSGYGRNNTLLTLCLAQYASGVSEAEAFDYADQWSSFQRQPLRDSEVRAIVRSAYSGRYQGANMSYVRELCERYVPGTVIKSGAQAWSHFRKPRAQRQYSHQQEWAQDLLRLAERSTDRVLGHARFTYLQLQQALGISRQSLVRLLNALAKRAQMSIRRVRGRNGGVYLATARMIAKYVQSEKGTVQREPEQPSPQAESVQMTLQIIGIFDGAMRHIKWSHSPIHISS
SIO_010081: LBCZ_RS14110
subclass of: SO_0000673
so part of: LBCZ_RS14110
location: 100..1581
location: region:100-1581:1
so has part: feature:100-1581:1:exon

WP_025013986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:100-1581:1:exon

LBCZ_RS15315
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15315
so part of: sequence
location: 1941..2728
location: region:1941-2728:1
so has part: feature:1941-2728:1:exon
subclass of: SO_0000010

45550093
type: Gene
SIO_000068: ncbigene

position:1941:1
position: 1941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2728:1
position: 2728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1941-2728:1:exon

LBCZ_RS15315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MPDYLSNISRAQFALIQPDLEKFRKHTRPRRYDLYDVFNAILYSLTTGCQWRELPHDFPEWHTVYRYYDMWRDKPDPTADSLLERLLKKPVVSYRFAQGRSARTSFVIVDAQSVKTTDLTKNSGYDGGKKISGIKRHMAVDINGLPQAILVTRANVSDRSGALAMLSLASQNLELVQHVMVDGGYTGNDFADQVKLILNAKTMVAKRNELHTFTVLPQRWIIERSWSWLDKCRRLWKNCERALNSSLQMVVLAFLKIVLKRY
SIO_010081: LBCZ_RS15315
subclass of: SO_0000673
so part of: LBCZ_RS15315
location: join(1941..2208,2208..2728)
location: region:1941-2728:1
so has part: feature:1941-2208:1:exon
so has part: feature:2208-2728:1:exon

WP_107811140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1941-2208:1:exon

position:2208:1
position: 2208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2208-2728:1:exon

LBCZ_RS14115
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14115
so part of: sequence
location: complement(2624..3424)
location: region:2624-3424:-1
so has part: feature:2624-3424:-1:exon
subclass of: SO_0000010

45549994
type: Gene
SIO_000068: ncbigene

position:2624:-1
position: 2624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3424:-1
position: 3424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2624-3424:-1:exon

LBCZ_RS14115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016389114.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotidyltransferase
translation: MTKLHKKSLSKLSEKVLTSLNQIFHQFTTEKEVWPYSIDESILDMTHTWRLFGNSVREVARLIQKTVRQKLGLYTTVGIGDNPVQAKLALDLYAKHNHELIGEIHYETVPDKIWSINELTDVWGIGPHMAKRLNRLQIHNMYELAHTNPYLLKQQLGIIGSQLFATAWGIDRAKVTEPIKVKAASLGNSQVLPRDYFNQAEIETVIKEIGEQVAARLRHHHKLAGCLSLRTRLVSFKNYLQEGQYNHLKTAVKGAFTVFPKSPTFV
SIO_010081: LBCZ_RS14115
subclass of: SO_0000673
so part of: LBCZ_RS14115
location: complement(2624..3424)
location: region:2624-3424:-1
so has part: feature:2624-3424:-1:exon

WP_275451565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2624-3424:-1:exon

LBCZ_RS15870
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15870
old locus tag: LBCZ_P1-0004
so part of: sequence
location: complement(3396..3806)
location: region:3396-3806:-1
so has part: feature:3396-3806:-1:exon
subclass of: SO_0000010

45550131
type: Gene
SIO_000068: ncbigene

position:3396:-1
position: 3396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3806:-1
position: 3806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3396-3806:-1:exon

LBCZ_RS15870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15870
old locus tag: LBCZ_P1-0004
inference: COORDINATES: protein motif:HMM:NF025063.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MLAHQISNHMDTDLVLATLKQAHQRWALPETCIFHSDRGSQYTAKAVTKLVNQYHWQRSFSALGKPGDNAWSESFFAIMKKELIYQIQFKDINDLRAQVFAYIETFYNRVRVQARLDYLAPVAWLSLYDQASQKVA
SIO_010081: LBCZ_RS15870
subclass of: SO_0000673
so part of: LBCZ_RS15870
location: complement(3396..3806)
location: region:3396-3806:-1
so has part: feature:3396-3806:-1:exon

WP_158423309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3396-3806:-1:exon

LBCZ_RS15875
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15875
so part of: sequence
location: complement(3852..4639)
location: region:3852-4639:-1
so has part: feature:3852-4639:-1:exon
subclass of: SO_0000010

45550132
type: Gene
SIO_000068: ncbigene

position:3852:-1
position: 3852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4639:-1
position: 4639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3852-4639:-1:exon

LBCZ_RS15875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MPDYLSNISRAQFALIQPDLEKFRKHTRPRRYDLYDVFNAILYSLTTGCQWRELPHDFPEWHTVYRYYDMWRDKPDPTADSLLERLLKKPVVSYRFAQGRSARTSFVIVDAQSVKTTDLTKNSGYDGGKKISGIKRHMAVDINGLPQAILVTRANVSDRSGALAMLSLASQNLELVQHVMVDGGYTGNDFADQVKLILNAKTMVAKRNELHTFTVLPQRWIIERSWSWLDKCRRLWKNCERALNSSLQMVVLAFLKIVLKRY
SIO_010081: LBCZ_RS15875
subclass of: SO_0000673
so part of: LBCZ_RS15875
location: complement(join(3852..4372,4372..4639))
location: region:3852-4639:-1
so has part: feature:4372-4639:-1:exon
so has part: feature:3852-4372:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4372-4639:-1:exon

position:4372:-1
position: 4372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3852-4372:-1:exon

LBCZ_RS14135
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14135
old locus tag: LBCZ_P1-0007
pseudo: true
so part of: sequence
location: <4701..5714
location: region:4701-5714:1
so has part: feature:4701-5714:1:exon
subclass of: SO_0000010

45549995
type: Gene
SIO_000068: ncbigene

position:4701:1
position: 4701
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5714:1
position: 5714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4701-5714:1:exon

LBCZ_RS14135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14135
old locus tag: LBCZ_P1-0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015379542.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: alpha-galactosidase
SIO_010081: LBCZ_RS14135
subclass of: SO_0000673
so part of: LBCZ_RS14135
location: <4701..5714
location: region:4701-5714:1
so has part: feature:4701-5714:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4701-5714:1:exon

LBCZ_RS14140
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14140
old locus tag: LBCZ_P1-0008
so part of: sequence
location: complement(5814..6773)
location: region:5814-6773:-1
so has part: feature:5814-6773:-1:exon
subclass of: SO_0000010

45549996
type: Gene
SIO_000068: ncbigene

position:5814:-1
position: 5814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6773:-1
position: 6773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5814-6773:-1:exon

LBCZ_RS14140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14140
old locus tag: LBCZ_P1-0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586188.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-galactosidase small subunit
translation: MAYTNNQLHVIYGDGSLGLQGANFHYLFSYERGGLESLVVNDKEWLYRTPTPIFWRATTDNDHGSGFSVKSAQWYAADKFSTCQDIELTVDDQPVTPLPIAPLNNKYTDHEIATKVSLAYHFVTTTVPSTIVTVTYTVTADGQINIATHYSGQSDLPELPAFGLRFIMPTTATGFDYTGLSGETYPDRLAGATHGQFHVDSLPVTPYLVPQECGMHMQTEQVTVTRSTTQNNADHDNTPFSLTFSQADAPFAFSCLPYTAAELENATHMEELPLARRTVLSIYGAVRGVGGIDSWGTDVEAPYHILADQDIDFSFNIHF
SIO_010081: LBCZ_RS14140
subclass of: SO_0000673
so part of: LBCZ_RS14140
location: complement(5814..6773)
location: region:5814-6773:-1
so has part: feature:5814-6773:-1:exon

WP_004559688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5814-6773:-1:exon

LBCZ_RS14145
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14145
old locus tag: LBCZ_P1-0009
so part of: sequence
location: complement(6757..8637)
location: region:6757-8637:-1
so has part: feature:6757-8637:-1:exon
subclass of: SO_0000010

45549997
type: Gene
SIO_000068: ncbigene

position:6757:-1
position: 6757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8637:-1
position: 8637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6757-8637:-1:exon

LBCZ_RS14145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14145
old locus tag: LBCZ_P1-0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012807385.1
GO function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 2 TIM barrel-domain containing protein
translation: MQANLQWLDDPEVFRVNQLPAHSDHHYYHDTAEFKTGSRFIKSLNGAWRFNFAKTPAERPVDFYQPDFDATDFDTIQVPGHIELAGYGQIQYINTLYPWEGKIYRRPPYTLNQDQLTPGLFSDAADNTVGSYLKTFDLDDAFKGQRIIIQFQGVEEALYVWLNGHFIGYAEDSFTPSEFDLTPYIQDQGNVLAVRVYKRSTAAFIEDQDMFRFSGIFRDVNILAEPASHITDLDIRPVPNANLKSGELNITTKVTGEPATLALTVKDHDGRVLTSQTQTSSGSVTFDTMLFDQLHLWSPQTPYLYQLTIEVYDADHQLLEVVPYQFGFRTVELRDDKVIYVNNKRLVINGVNRHEWNAHTGRVISMADMRADIQTMLANNINADRTCHYPDQLPWYQLCDEAGIYIMAENNLESHGSWQKMGAIEPSYNVPGDNPHWLAAVIDRARSNYEWFKNHPSIIFWSLGNESYAGEDIAAMQAFYKEHDDSRLVHYEGVVYTPELKDRISDVESRMYEKPQNIVAYLEDNPTKPFLDCEYMHDMGNSLGGMQSYNDLIDKYPMYQGGFIWDFIDQALFVHDPITDQDVLRYGGDFDDRHSDYEFSGDGLMFADRTPKPAMQEVKYYYGLHK
SIO_010081: LBCZ_RS14145
subclass of: SO_0000673
so part of: LBCZ_RS14145
location: complement(6757..8637)
location: region:6757-8637:-1
so has part: feature:6757-8637:-1:exon

WP_039640181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6757-8637:-1:exon

LBCZ_RS14150
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14150
old locus tag: LBCZ_P1-0010
so part of: sequence
location: complement(8825..10330)
location: region:8825-10330:-1
so has part: feature:8825-10330:-1:exon
subclass of: SO_0000010

45549998
type: Gene
SIO_000068: ncbigene

position:8825:-1
position: 8825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10330:-1
position: 10330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8825-10330:-1:exon

LBCZ_RS14150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14150
old locus tag: LBCZ_P1-0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004560356.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3 family transposase
translation: MDNDIRILIGLTDLNVDFDPKAEQHFNETNLNGTTTITWNLLLTYATNCEKCGTPLVHNGTKMVTHQGPRSAFKFQNYRIRKQKFLCKKCGHTSIAHLTDIQPNNPIIDKVKQTAAMELSENVSQKHIALDNNISTQTVMRAAEGLFVYNKTNFHYLPQNIAFDDFKSGKFATSGMSMILIDSVNHHILDVMKERGAGQLRAYFNQYSPAARAAVKTITVDLFTPYRAMIKDLFPNANIVADRFHVVTQAYRELNKVRISVMKQFGSDSKEYRQLKRFWKLLMKHETALDYTSRKNRINFKHAYLTDKEVIDRLLALSDELRDAYAFYQGILYAIETRDEAELKSVLYPTKNDAQYRSLPKAMKKARRTIRKHFDEIINSFIYGFSNGPIEGSNNKIKAIKRTAYGFRSFKNFRLRILISFKNIFYSMNYKQKAADLNNVKSAAEARFKILNFTGHQYHLTLNRFKSLVFMKNPSVNSFTKILLGLTIMIFLIVVNTPQDL
SIO_010081: LBCZ_RS14150
subclass of: SO_0000673
so part of: LBCZ_RS14150
location: complement(8825..10330)
location: region:8825-10330:-1
so has part: feature:8825-10330:-1:exon

WP_025013866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8825-10330:-1:exon

LBCZ_RS14155
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14155
old locus tag: LBCZ_P1-0011
pseudo: true
so part of: sequence
location: 10625..>10855
location: region:10625-10855:1
so has part: feature:10625-10855:1:exon
subclass of: SO_0000010

45549999
type: Gene
SIO_000068: ncbigene

position:10625:1
position: 10625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10855:1
position: 10855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10625-10855:1:exon

LBCZ_RS14155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14155
old locus tag: LBCZ_P1-0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011674571.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: LBCZ_RS14155
subclass of: SO_0000673
so part of: LBCZ_RS14155
location: 10625..>10855
location: region:10625-10855:1
so has part: feature:10625-10855:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10625-10855:1:exon

LBCZ_RS14165
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14165
old locus tag: LBCZ_P1-0013
so part of: sequence
location: 10923..12085
location: region:10923-12085:1
so has part: feature:10923-12085:1:exon
subclass of: SO_0000010

45550000
type: Gene
SIO_000068: ncbigene

position:10923:1
position: 10923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12085:1
position: 12085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10923-12085:1:exon

LBCZ_RS14165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14165
old locus tag: LBCZ_P1-0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612170.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTYSRNRYDQDFKKNAVRLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASLEAENRALKRENAELALERDMFKKSRRLLCQSPEVTPSDKYAFMLRETSVSVVRWARLLDVSTSGYYAWRRALPKRNAKERQYRQRIKHFFDQGQGTYGPKRICGLLRKNGNKASYHRVARLMADAGLYSTLCCRHPKSLTDSRLARQGDYPNLVKHQSFKPFEALSSDITQTTTSEGKAYICQIRDLTSNLVLAHQISNHMDTDLVLATLKQAHQRWALPETCIFHSDRGSQYTAKAVTKLVNQYHWQRSFSALGKPGDNAWSESFFASMKKELIYQIQFKDINDLRAQVFAYIETFYNRVRVQARLDYLAPVTWLSLYDQASQKVA
SIO_010081: LBCZ_RS14165
subclass of: SO_0000673
so part of: LBCZ_RS14165
location: join(10923..11163,11163..12085)
location: region:10923-12085:1
so has part: feature:10923-11163:1:exon
so has part: feature:11163-12085:1:exon

WP_144340559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10923-11163:1:exon

position:11163:1
position: 11163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11163-12085:1:exon

LBCZ_RS16225
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS16225
old locus tag: LBCZ_P1-0014
pseudo: true
so part of: sequence
location: 12181..>12636
location: region:12181-12636:1
so has part: feature:12181-12636:1:exon
subclass of: SO_0000010

59101649
type: Gene
SIO_000068: ncbigene

position:12181:1
position: 12181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12636:1
position: 12636
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12181-12636:1:exon

LBCZ_RS16225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS16225
old locus tag: LBCZ_P1-0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011834178.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: lipoate--protein ligase family protein
SIO_010081: LBCZ_RS16225
subclass of: SO_0000673
so part of: LBCZ_RS16225
location: 12181..>12636
location: region:12181-12636:1
so has part: feature:12181-12636:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12181-12636:1:exon

LBCZ_RS16230
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS16230
old locus tag: LBCZ_P1-0015
so part of: sequence
location: 12717..13070
location: region:12717-13070:1
so has part: feature:12717-13070:1:exon
subclass of: SO_0000010

59101650
type: Gene
SIO_000068: ncbigene

position:12717:1
position: 12717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13070:1
position: 13070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12717-13070:1:exon

LBCZ_RS16230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS16230
old locus tag: LBCZ_P1-0015
inference: COORDINATES: protein motif:HMM:NF018645.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MSGHEKISEYVKESIKAAIFNLGYLPKTDKSVVTKADTTLTALDALTNQLVVGGRIAIVIYYGHEGGMEEKDAVIKLTSSLPQKDWEVTSYAPLNQIHTPPILVLIEKSKIEICLIF
SIO_010081: LBCZ_RS16230
subclass of: SO_0000673
so part of: LBCZ_RS16230
location: 12717..13070
location: region:12717-13070:1
so has part: feature:12717-13070:1:exon

WP_232900619.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12717-13070:1:exon

LBCZ_RS14180
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14180
old locus tag: LBCZ_P1-0016
so part of: sequence
location: 13104..13991
location: region:13104-13991:1
so has part: feature:13104-13991:1:exon
subclass of: SO_0000010

45550001
type: Gene
SIO_000068: ncbigene

position:13104:1
position: 13104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13991:1
position: 13991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13104-13991:1:exon

LBCZ_RS14180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14180
old locus tag: LBCZ_P1-0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003132622.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GRP family sugar transporter
translation: MQGVLFALVPIFAWGSIGVVANKIGGDANQQTLGMTLGAFVFALIVFLFRMPTLTWQIFLIGFIGGLFWAIGQFGQFNSMKYMGVSVASPLSSGSQLVIGGLLGVFAFHEWTKQIQFILGFTAMAVLIVGFYFSAKRDPENAVVEEGRNYTKGLIALTYSTLGYVSYVILFNNLAVLWFNVHFDTLTIILPMSVGMIFGALVMGRFKIKMEKYVYQNMINGVMFGVGNIFMLMAASAAGNAIAFSFSQLGVVISTIGGILFLGEKKTKKELVYVGIGIVLFVTGAILLAIVKSKG
SIO_010081: LBCZ_RS14180
subclass of: SO_0000673
so part of: LBCZ_RS14180
location: 13104..13991
location: region:13104-13991:1
so has part: feature:13104-13991:1:exon

WP_025014017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13104-13991:1:exon

LBCZ_RS15335
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15335
pseudo: true
so part of: sequence
location: complement(14200..14986)
location: region:14200-14986:-1
so has part: feature:14200-14986:-1:exon
subclass of: SO_0000010

45550095
type: Gene
SIO_000068: ncbigene

position:14200:-1
position: 14200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14986:-1
position: 14986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14200-14986:-1:exon

LBCZ_RS15335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: LBCZ_RS15335
subclass of: SO_0000673
so part of: LBCZ_RS15335
location: complement(14200..14986)
location: region:14200-14986:-1
so has part: feature:14200-14986:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14200-14986:-1:exon

LBCZ_RS14190
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14190
old locus tag: LBCZ_P1-0020
so part of: sequence
location: complement(15173..15730)
location: region:15173-15730:-1
so has part: feature:15173-15730:-1:exon
subclass of: SO_0000010

45550002
type: Gene
SIO_000068: ncbigene

position:15173:-1
position: 15173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15730:-1
position: 15730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15173-15730:-1:exon

LBCZ_RS14190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14190
old locus tag: LBCZ_P1-0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003590051.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine O-acetyltransferase
translation: MFQTARSILKRDPAAHSLLQVILTYPGVRALFWYRIAHFFASHQRFVIAGLISQHAAKVTGITIAPEATIGKRVFIDHGVGTVIGATAIIEDDVTILHGVTFGTRRMTDKGRRHPHVRKGAFIGANAQILGPIEIGPYSKVGAGAVVLVNVPSHLTVVGNPATIAPHPISKVVSVSFNHQVTRSK
SIO_010081: LBCZ_RS14190
subclass of: SO_0000673
so part of: LBCZ_RS14190
location: complement(15173..15730)
location: region:15173-15730:-1
so has part: feature:15173-15730:-1:exon

WP_003590051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15173-15730:-1:exon

LBCZ_RS14195
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14195
old locus tag: LBCZ_P1-0021
so part of: sequence
location: complement(15696..16880)
location: region:15696-16880:-1
so has part: feature:15696-16880:-1:exon
subclass of: SO_0000010

45550003
type: Gene
SIO_000068: ncbigene

position:15696:-1
position: 15696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16880:-1
position: 16880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15696-16880:-1:exon

LBCZ_RS14195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14195
old locus tag: LBCZ_P1-0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011225851.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PLP-dependent aspartate aminotransferase family protein
translation: MEFDTKLIHGGISEDKYTGATSVPIYMASTFHQQKIGENEYEYSRSGNPTREAVEKLIADLEDGTAGFAFASGSAAIDTVFSLFSAGDHFVIGNDVYGGTFRLIDAVLKRFGMTFTVVDTRDLQAVKAAITPATKAIYLETPTNPLLRVTDIAAVAKIAKDRGILSIIDNTFSSPYVQRPLDLGVDIVLHSASKYLGGHSDLVAGLVVTKDQALGEKIGYLQNAIGGILAPQESWLLQRGMKTLSLRMRAHLANAEAIFNYLKNQPLVSKIYYPGDPNNPDYEVAQKQMHGFGAMISFELQAGLDPKQFVEQPQVITLAESLGALESLIEIPALMTHGSIPHDIRLKNGIKDELIRLSVGVEDQKDLLADLERGFDQLKGSHQDVSNSKVHSQA
SIO_010081: LBCZ_RS14195
subclass of: SO_0000673
so part of: LBCZ_RS14195
location: complement(15696..16880)
location: region:15696-16880:-1
so has part: feature:15696-16880:-1:exon

WP_039640188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15696-16880:-1:exon

LBCZ_RS14200
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14200
old locus tag: LBCZ_P1-0022
so part of: sequence
location: complement(16922..17833)
location: region:16922-17833:-1
so has part: feature:16922-17833:-1:exon
subclass of: SO_0000010

45550004
type: Gene
SIO_000068: ncbigene

position:16922:-1
position: 16922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17833:-1
position: 17833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16922-17833:-1:exon

LBCZ_RS14200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14200
old locus tag: LBCZ_P1-0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012212307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine synthase family protein
translation: MLIQSVSQLIGHTPMIDLQINVPHHSHIYAKLEMFNPGGSIKDRLGQYMIQDAIDHGKVTEGKTTIIEPTAGNTGIGVTLAAQQHRLPTILVVPEKFSFEKQQLMKALGATLINTPSDQGIKGAIQKARELAAKTPNSFVPMQFENPANPATYYHTLAPELVADVPAQINAFVAGAGSGGTFAGIARYLKEQNSATRTVVVEPEGSILNGGPAHPHKTEGIGVEFIPPFFKDVQIDETLTISDNDAFDQVKQMAKTQGLFIGSSSGAALAASLKVANELPENSSIVTVFPDSSERYMSENIYN
SIO_010081: LBCZ_RS14200
subclass of: SO_0000673
so part of: LBCZ_RS14200
location: complement(16922..17833)
location: region:16922-17833:-1
so has part: feature:16922-17833:-1:exon

WP_025013994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16922-17833:-1:exon

LBCZ_RS16500
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS16500
old locus tag: LBCZ_P1-0023
so part of: sequence
location: 18331..18582
location: region:18331-18582:1
so has part: feature:18331-18582:1:exon
subclass of: SO_0000010

71765595
type: Gene
SIO_000068: ncbigene

position:18331:1
position: 18331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18582:1
position: 18582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18331-18582:1:exon

LBCZ_RS16500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS16500
old locus tag: LBCZ_P1-0023
inference: COORDINATES: protein motif:HMM:NF013677.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTSRYDKEFKQNIINLYKQGESAAQMAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
SIO_010081: LBCZ_RS16500
subclass of: SO_0000673
so part of: LBCZ_RS16500
location: 18331..18582
location: region:18331-18582:1
so has part: feature:18331-18582:1:exon

WP_015975056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18331-18582:1:exon

LBCZ_RS16505
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS16505
old locus tag: LBCZ_P1-0024
so part of: sequence
location: 18636..19028
location: region:18636-19028:1
so has part: feature:18636-19028:1:exon
subclass of: SO_0000010

71765596
type: Gene
SIO_000068: ncbigene

position:18636:1
position: 18636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19028:1
position: 19028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18636-19028:1:exon

LBCZ_RS16505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS16505
old locus tag: LBCZ_P1-0024
inference: COORDINATES: protein motif:HMM:NF024673.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MCRILGVSRAQYYRYRSPKPSKRRAEDAGLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNG
SIO_010081: LBCZ_RS16505
subclass of: SO_0000673
so part of: LBCZ_RS16505
location: 18636..19028
location: region:18636-19028:1
so has part: feature:18636-19028:1:exon

WP_082021725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18636-19028:1:exon

LBCZ_RS15895
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15895
old locus tag: LBCZ_P1-0025
so part of: sequence
location: 19044..19478
location: region:19044-19478:1
so has part: feature:19044-19478:1:exon
subclass of: SO_0000010

45550134
type: Gene
SIO_000068: ncbigene

position:19044:1
position: 19044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19478:1
position: 19478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19044-19478:1:exon

LBCZ_RS15895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15895
old locus tag: LBCZ_P1-0025
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
SIO_010081: LBCZ_RS15895
subclass of: SO_0000673
so part of: LBCZ_RS15895
location: 19044..19478
location: region:19044-19478:1
so has part: feature:19044-19478:1:exon

WP_272946510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19044-19478:1:exon

LBCZ_RS14220
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14220
old locus tag: LBCZ_P1-0027
pseudo: true
so part of: sequence
location: <19601..20625
location: region:19601-20625:1
so has part: feature:19601-20625:1:exon
subclass of: SO_0000010

45550005
type: Gene
SIO_000068: ncbigene

position:19601:1
position: 19601
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:20625:1
position: 20625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19601-20625:1:exon

LBCZ_RS14220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14220
old locus tag: LBCZ_P1-0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612170.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3-like element ISL1 family transposase
SIO_010081: LBCZ_RS14220
subclass of: SO_0000673
so part of: LBCZ_RS14220
location: <19601..20625
location: region:19601-20625:1
so has part: feature:19601-20625:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19601-20625:1:exon

LBCZ_RS15345
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15345
pseudo: true
so part of: sequence
location: complement(<20660..20977)
location: region:20660-20977:-1
so has part: feature:20660-20977:-1:exon
subclass of: SO_0000010

45550096
type: Gene
SIO_000068: ncbigene

position:20660:-1
position: 20660
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:20977:-1
position: 20977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20660-20977:-1:exon

LBCZ_RS15345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474151.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: LBCZ_RS15345
subclass of: SO_0000673
so part of: LBCZ_RS15345
location: complement(<20660..20977)
location: region:20660-20977:-1
so has part: feature:20660-20977:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20660-20977:-1:exon

LBCZ_RS14225
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14225
old locus tag: LBCZ_P1-0029
so part of: sequence
location: complement(21512..21796)
location: region:21512-21796:-1
so has part: feature:21512-21796:-1:exon
subclass of: SO_0000010

45550006
type: Gene
SIO_000068: ncbigene

position:21512:-1
position: 21512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21796:-1
position: 21796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21512-21796:-1:exon

LBCZ_RS14225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14225
old locus tag: LBCZ_P1-0029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020751798.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BRCT domain-containing protein
translation: MIDLRGKRILFTGRLRSFRRLQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKLTYARTYGIPKIDELAFISWCQWRLDQLKATL
SIO_010081: LBCZ_RS14225
subclass of: SO_0000673
so part of: LBCZ_RS14225
location: complement(21512..21796)
location: region:21512-21796:-1
so has part: feature:21512-21796:-1:exon

WP_012807396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21512-21796:-1:exon

LBCZ_RS14230
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14230
old locus tag: LBCZ_P1-0030
so part of: sequence
location: complement(21802..22452)
location: region:21802-22452:-1
so has part: feature:21802-22452:-1:exon
subclass of: SO_0000010

45550007
type: Gene
SIO_000068: ncbigene

position:21802:-1
position: 21802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22452:-1
position: 22452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21802-22452:-1:exon

LBCZ_RS14230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14230
old locus tag: LBCZ_P1-0030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586220.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKIGYARVSTRDQNLARQIEQLHDAGVNKIFQEKLSGKNADRPQLKAMLDYIRDDDEVVVLSLDRLGRNSHDLTNIIETIRHRGAQLNVLNLPSFASIEDPNLRNLITTIIVELYKYIAQEERETIKIRQQQGIEIAKRQGKYKGKIREYGPHSPNRQKRYIYKEACRLLNRKKDGDKTLTKRQIARMLGIAPVTLYRIEKYQAEDLANVPPSER
SIO_010081: LBCZ_RS14230
subclass of: SO_0000673
so part of: LBCZ_RS14230
location: complement(21802..22452)
location: region:21802-22452:-1
so has part: feature:21802-22452:-1:exon

WP_025014008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21802-22452:-1:exon

LBCZ_RS14235
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14235
old locus tag: LBCZ_P1-0031
so part of: sequence
location: complement(22528..22896)
location: region:22528-22896:-1
so has part: feature:22528-22896:-1:exon
subclass of: SO_0000010

45550008
type: Gene
SIO_000068: ncbigene

position:22528:-1
position: 22528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22896:-1
position: 22896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22528-22896:-1:exon

LBCZ_RS14235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14235
old locus tag: LBCZ_P1-0031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019889483.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YxeA family protein
translation: MNENHKERLWLTSFLAAIVATIAFSVYITEYQYGGDSYYMKIDSQPIISNVEVPVGISIQGYTYEGAAKNAQGKIKNLKLKTDEHDIGPFKSGQIIKITVNKTYGIVDYQRVTKKETPLRAQ
SIO_010081: LBCZ_RS14235
subclass of: SO_0000673
so part of: LBCZ_RS14235
location: complement(22528..22896)
location: region:22528-22896:-1
so has part: feature:22528-22896:-1:exon

WP_003582572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22528-22896:-1:exon

LBCZ_RS14240
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14240
old locus tag: LBCZ_P1-0032
so part of: sequence
location: complement(23162..23443)
location: region:23162-23443:-1
so has part: feature:23162-23443:-1:exon
subclass of: SO_0000010

45550009
type: Gene
SIO_000068: ncbigene

position:23162:-1
position: 23162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23443:-1
position: 23443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23162-23443:-1:exon

LBCZ_RS14240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14240
old locus tag: LBCZ_P1-0032
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016363782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MNKFIYKPAFERQFKKHYKTILKGGRYKKEDFEAVYHKLLRDEPLDPHYNDHALVNRKPERDLHIKPDWLLIYKYDGEFLRFIDTGSHSDLFN
SIO_010081: LBCZ_RS14240
subclass of: SO_0000673
so part of: LBCZ_RS14240
location: complement(23162..23443)
location: region:23162-23443:-1
so has part: feature:23162-23443:-1:exon

WP_003572114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23162-23443:-1:exon

LBCZ_RS14245
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14245
so part of: sequence
location: complement(23436..23678)
location: region:23436-23678:-1
so has part: feature:23436-23678:-1:exon
subclass of: SO_0000010

45550010
type: Gene
SIO_000068: ncbigene

position:23436:-1
position: 23436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23678:-1
position: 23678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23436-23678:-1:exon

LBCZ_RS14245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016369696.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MTSQVHFRMSEKEKKDFEIVLSRVGLTPGEAFRIFAKKSIEAGGIPFEVSQPNTRLKKAIRSQDYVEFNDPEEGLDWLNE
SIO_010081: LBCZ_RS14245
subclass of: SO_0000673
so part of: LBCZ_RS14245
location: complement(23436..23678)
location: region:23436-23678:-1
so has part: feature:23436-23678:-1:exon

WP_016363783.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23436-23678:-1:exon

LBCZ_RS15360
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS15360
pseudo: true
so part of: sequence
location: 23947..24945
location: region:23947-24945:1
so has part: feature:23947-24945:1:exon
subclass of: SO_0000010

45550097
type: Gene
SIO_000068: ncbigene

position:23947:1
position: 23947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24945:1
position: 24945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23947-24945:1:exon

LBCZ_RS15360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS15360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612170.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: LBCZ_RS15360
subclass of: SO_0000673
so part of: LBCZ_RS15360
location: 23947..24945
location: region:23947-24945:1
so has part: feature:23947-24945:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23947-24945:1:exon

LBCZ_RS14265
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14265
old locus tag: LBCZ_P1-0035
so part of: sequence
location: complement(25099..25443)
location: region:25099-25443:-1
so has part: feature:25099-25443:-1:exon
subclass of: SO_0000010

45550011
type: Gene
SIO_000068: ncbigene

position:25099:-1
position: 25099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25443:-1
position: 25443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25099-25443:-1:exon

LBCZ_RS14265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14265
old locus tag: LBCZ_P1-0035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016388657.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5388 domain-containing protein
translation: MGMLEKKPAQKNGKSLLRHTPGGVEVENQVDRESIIQSVKETAAPKKKPSEKTTSIRISVTTRNALNSLVTLGEADTVNTLLDQLITQKLESLRPDQKRTYDIINGVATKRDKD
SIO_010081: LBCZ_RS14265
subclass of: SO_0000673
so part of: LBCZ_RS14265
location: complement(25099..25443)
location: region:25099-25443:-1
so has part: feature:25099-25443:-1:exon

WP_025013985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25099-25443:-1:exon

LBCZ_RS14270
type: Gene
subclass of: SO_0000704
RO_0002162: 1423732
locus tag: LBCZ_RS14270
old locus tag: LBCZ_P1-0036
so part of: sequence
location: complement(25446..26261)
location: region:25446-26261:-1
so has part: feature:25446-26261:-1:exon
subclass of: SO_0000010

45550012
type: Gene
SIO_000068: ncbigene

position:25446:-1
position: 25446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26261:-1
position: 26261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25446-26261:-1:exon

LBCZ_RS14270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1423732
locus tag: LBCZ_RS14270
old locus tag: LBCZ_P1-0036
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003583182.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTATVLSFANFKGGVGKTSTTALVAWSLTKAGHKVCMIDFDPQANLTALMIKTYASLHNDMPATIKTSLMTAITEDKPLKDIMISISDNLDLVPNAVDFSIYGNFLTSKYPTEKEQVTSFRPYVDALRDAYDFIFIDVPPTLQPSNDTAFYACDQLIVVLQTQERALTGAEQFVKYMQSFMIDRYNAPLDILGILPVLTERRAPVDEAVLQAAIDEFGTENIFKHHILIQSRIKRYDMTGITDNPKDMWDKKVHNAYKAVAEEMIQRLEAN
SIO_010081: LBCZ_RS14270
subclass of: SO_0000673
so part of: LBCZ_RS14270
location: complement(25446..26261)
location: region:25446-26261:-1
so has part: feature:25446-26261:-1:exon

WP_039640171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25446-26261:-1:exon