Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T
Submitted (11-DEC-2013) Microbial Ecology and Diversity, DSMZ, Inhoffenstrasse 7b, Braunschweig, Niedersachsen 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006968.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 22x\nSequencing Technology :: Roche/454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 12:00:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,381\nCDSs (total) :: 4,307\nGenes (coding) :: 4,282\nCDSs (with protein) :: 4,282\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 8 of 25\nPseudo Genes (incomplete) :: 19 of 25\nPseudo Genes (internal stop) :: 7 of 25\nPseudo Genes (multiple problems) :: 8 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Phaeobacter gallaeciensis
COORDINATES: similar to AA sequence:RefSeq:WP_009574209.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005617061.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807963.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807962.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187066.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807542.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007425104.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500674.1
COORDINATES: protein motif:HMM:NF012798.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187358.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807539.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820261.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187077.1
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007120648.1
type II toxin-antitoxin system YhaV family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019956866.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819682.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819681.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187346.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815530.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: similar to AA sequence:RefSeq:WP_006424814.1
COORDINATES: similar to AA sequence:RefSeq:WP_008227827.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536569.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282942.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807938.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807937.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009805212.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017927535.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017927536.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819805.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_009805216.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017927539.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927540.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808070.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120671.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187154.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807515.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327387.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803688.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807512.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820232.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327379.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009503800.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807508.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008327373.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808058.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327370.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282965.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503806.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120686.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009815553.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536608.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503854.1
COORDINATES: similar to AA sequence:RefSeq:WP_013963890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121392.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121393.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007121394.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007121395.1
COORDINATES: similar to AA sequence:RefSeq:WP_005645239.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017927563.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303599.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120864.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120865.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803470.1
COORDINATES: similar to AA sequence:RefSeq:WP_008946249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803467.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120870.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001716.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120872.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120873.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009820143.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120884.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120885.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968681.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820147.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824197.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009820150.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803445.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820152.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065788.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008282881.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820155.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187177.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803438.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_007803435.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187179.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327308.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187184.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808021.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803416.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012187038.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803412.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807488.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803406.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803405.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803403.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803401.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807486.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008327290.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803395.1
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808008.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_007803391.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_009808006.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803387.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042978.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808003.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803380.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009808001.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012187040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803357.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327266.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808026.1
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_009808024.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612002.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007803209.1
COORDINATES: similar to AA sequence:RefSeq:WP_015931502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803215.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803217.1
IS5-like element ISRhba5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_018065890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803220.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803221.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398646.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001709.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578834.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_005859475.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574264.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187057.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807966.1