Phaeobacter gallaeciensis DSM 26640 plasmid pGal_F69, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T
Submitted (11-DEC-2013) Microbial Ecology and Diversity, DSMZ, Inhoffenstrasse 7b, Braunschweig, Niedersachsen 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006972.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 22x\nSequencing Technology :: Roche/454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 12:00:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,381\nCDSs (total) :: 4,307\nGenes (coding) :: 4,282\nCDSs (with protein) :: 4,282\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 8 of 25\nPseudo Genes (incomplete) :: 19 of 25\nPseudo Genes (internal stop) :: 7 of 25\nPseudo Genes (multiple problems) :: 8 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Phaeobacter gallaeciensis
COORDINATES: similar to AA sequence:RefSeq:WP_008209615.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014876638.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876637.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889420.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889419.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889418.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876633.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876632.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876631.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889416.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889415.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889414.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889413.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889412.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889411.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889410.1
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889408.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889407.1
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009807635.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876620.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_019294893.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876618.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876617.1
GO:0005615 - extracellular space [Evidence IEA]
GO:0005509 - calcium ion binding [Evidence IEA]
M10 family metallopeptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294850.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876615.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014889398.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889397.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_014876612.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889396.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889395.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294856.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175289.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_019294858.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876604.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018303041.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876602.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889387.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876600.1
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876598.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014876597.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889382.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889380.1