Phaeobacter gallaeciensis DSM 26640 plasmid pGal_D78, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T
Submitted (11-DEC-2013) Microbial Ecology and Diversity, DSMZ, Inhoffenstrasse 7b, Braunschweig, Niedersachsen 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006970.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 22x\nSequencing Technology :: Roche/454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 12:00:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,381\nCDSs (total) :: 4,307\nGenes (coding) :: 4,282\nCDSs (with protein) :: 4,282\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 8 of 25\nPseudo Genes (incomplete) :: 19 of 25\nPseudo Genes (internal stop) :: 7 of 25\nPseudo Genes (multiple problems) :: 8 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Phaeobacter gallaeciensis
COORDINATES: similar to AA sequence:RefSeq:WP_008208306.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005610307.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208310.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889483.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876588.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889480.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442008.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889478.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014889476.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876582.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014876581.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889473.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889472.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876577.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876576.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876575.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876574.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889467.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876572.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876571.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889464.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876569.1
siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889462.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007796556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889460.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889459.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830373.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014876562.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889456.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008563446.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209508.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: similar to AA sequence:RefSeq:WP_014876558.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876557.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889453.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011538178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889451.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014876552.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876550.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442690.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876547.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876546.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876545.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876544.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889441.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889431.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876540.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889426.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876534.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_014876533.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889424.1