Phaeobacter gallaeciensis DSM 26640 plasmid pGal_C110, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T
Submitted (11-DEC-2013) Microbial Ecology and Diversity, DSMZ, Inhoffenstrasse 7b, Braunschweig, Niedersachsen 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006969.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 22x\nSequencing Technology :: Roche/454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 12:00:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,381\nCDSs (total) :: 4,307\nGenes (coding) :: 4,282\nCDSs (with protein) :: 4,282\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 8 of 25\nPseudo Genes (incomplete) :: 19 of 25\nPseudo Genes (internal stop) :: 7 of 25\nPseudo Genes (multiple problems) :: 8 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Phaeobacter gallaeciensis
COORDINATES: similar to AA sequence:RefSeq:WP_005854399.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007802646.1
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011539289.1
COORDINATES: similar to AA sequence:RefSeq:WP_011539288.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010512685.1
COORDINATES: similar to AA sequence:RefSeq:WP_008958835.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005848537.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010442661.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007427944.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_009178491.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011454575.1
GO:0033735 - aspartate dehydrogenase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011538929.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009724062.1
COORDINATES: similar to AA sequence:RefSeq:WP_009100404.1
COORDINATES: similar to AA sequence:RefSeq:WP_009721571.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018062663.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013531745.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_007426134.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_005605943.1
GO:0000334 - 3-hydroxyanthranilate 3,4-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007598161.1
COORDINATES: similar to AA sequence:RefSeq:WP_006940257.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020592108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759172.1
COORDINATES: similar to AA sequence:RefSeq:WP_008226199.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008891878.1
COORDINATES: similar to AA sequence:RefSeq:WP_009177779.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178031.1
COORDINATES: similar to AA sequence:RefSeq:WP_005637293.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612067.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_019461318.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009573848.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797209.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007688996.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019808851.1
COORDINATES: protein motif:HMM:NF023144.2
GO:0046872 - metal ion binding [Evidence IEA]
maleylpyruvate isomerase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024854.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014240192.1
COORDINATES: protein motif:HMM:NF012804.2
COORDINATES: similar to AA sequence:RefSeq:WP_020639859.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF028178.2
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF004829.0
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_014496450.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653806.1
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015768799.1
antibiotic biosynthesis monooxygenase family protein
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:NF025607.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF014132.2
SCP2 sterol-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012481.2
COORDINATES: similar to AA sequence:RefSeq:WP_007206826.1
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: protein motif:HMM:TIGR02122.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006939025.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_017967613.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550245.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003554581.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000575.1
COORDINATES: similar to AA sequence:RefSeq:WP_009026054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008190836.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007788697.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691471.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000589.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335478.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612068.1
COORDINATES: similar to AA sequence:RefSeq:WP_005863190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879161.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014879160.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_005610953.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744215.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008204993.1
COORDINATES: protein motif:HMM:NF015995.2
glycine betaine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: similar to AA sequence:RefSeq:WP_008204996.1
COORDINATES: similar to AA sequence:RefSeq:WP_008204997.1
COORDINATES: similar to AA sequence:RefSeq:WP_014320746.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_020592112.1
COORDINATES: similar to AA sequence:RefSeq:WP_008206938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008206939.1
COORDINATES: similar to AA sequence:RefSeq:WP_008206940.1
COORDINATES: similar to AA sequence:RefSeq:WP_008206942.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_008206946.1
COORDINATES: protein motif:HMM:NF012655.2