Lysinibacillus sphaericus strain NEU 1003 plasmid pLs1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.
Genome sequence of Lysinibacillus sphaericus NEU 1003
Submitted (11-MAY-2020) BioScience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP053369.1.\nBacteria and source DNA available from Dr Pilar Junier.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: SPAdes v. 3.13.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 24.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/05/2022 03:40:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,686\nCDSs (total) :: 4,554\nGenes (coding) :: 4,487\nCDSs (with protein) :: 4,487\nGenes (RNA) :: 132\nrRNAs :: 10, 9, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 8 (5S, 16S, 23S)\ntRNAs :: 100\nncRNAs :: 5\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 34 of 67\nPseudo Genes (incomplete) :: 39 of 67\nPseudo Genes (internal stop) :: 8 of 67\nPseudo Genes (multiple problems) :: 13 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF016362.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001027416.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001226074.1
COORDINATES: similar to AA sequence:RefSeq:WP_000383890.1
COORDINATES: protein motif:HMM:NF015783.2
GO:0009847 - spore germination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015292.2
COORDINATES: protein motif:HMM:NF017328.2
Ger(x)C family spore germination C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024431.2
COORDINATES: similar to AA sequence:RefSeq:WP_005545829.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:TIGR02681.1
COORDINATES: protein motif:HMM:TIGR01637.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011922233.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744698.1
COORDINATES: protein motif:HMM:NF024363.2
COORDINATES: similar to AA sequence:RefSeq:WP_010329824.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004231466.1
COORDINATES: similar to AA sequence:RefSeq:WP_012291670.1
COORDINATES: similar to AA sequence:RefSeq:WP_008591948.1
COORDINATES: similar to AA sequence:RefSeq:WP_004230548.1
COORDINATES: similar to AA sequence:RefSeq:WP_004224219.1
COORDINATES: protein motif:HMM:NF024919.2
papain-like cysteine protease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004230916.1
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF024755.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF014581.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF012613.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF036438.2
COORDINATES: protein motif:HMM:NF013954.2
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002418674.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037425.2
COORDINATES: similar to AA sequence:RefSeq:WP_019377691.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013878.2
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010529453.1