Pacificitalea manganoxidans strain DY25 plasmid pDY25-E, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pacificitalea.
Comparative genomic and metabolic analysis of manganese-oxidizing mechanisms in Celeribater manganoxidans DY25T: its adaption to the environment of polymetallic nodule
Submitted (22-MAY-2017) College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao, Shandong 266003, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP021409.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.3\nAssembly Name :: CelManDY25\nLong Assembly Name :: Celeribacter manganoxidans DY25\nGenome Coverage :: 100x\nSequencing Technology :: Complete Genomics\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 01:54:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,656\nCDSs (total) :: 3,599\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 19 of 45\nPseudo Genes (incomplete) :: 30 of 45\nPseudo Genes (internal stop) :: 5 of 45\nPseudo Genes (multiple problems) :: 8 of 45\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Celeribacter manganoxidans
COORDINATES: similar to AA sequence:RefSeq:WP_018444463.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003526859.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530483.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018896803.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011337275.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468849.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562927.1
PotD/PotF family extracellular solute-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014743950.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896994.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019322.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007759303.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007759285.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014131705.1
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009208390.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007770176.1
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006159362.1
COORDINATES: protein motif:HMM:TIGR02122.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: similar to AA sequence:RefSeq:WP_008331266.1
COORDINATES: similar to AA sequence:RefSeq:WP_013066289.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002723197.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007090237.1
COORDINATES: similar to AA sequence:RefSeq:WP_011389954.1
COORDINATES: similar to AA sequence:RefSeq:WP_008122580.1
COORDINATES: similar to AA sequence:RefSeq:WP_014626345.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010660800.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010140003.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140004.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140005.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007006856.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010139818.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011841759.1
COORDINATES: protein motif:HMM:NF015737.2
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: protein motif:HMM:NF018482.2
invasion associated locus B family protein
autotransporter domain-containing protein
COORDINATES: protein motif:HMM:NF012888.2
tetratricopeptide repeat-containing sulfotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009502643.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013385643.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242084.1
COORDINATES: similar to AA sequence:RefSeq:WP_014993394.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014578064.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142411.1
COORDINATES: similar to AA sequence:RefSeq:WP_003563333.1
COORDINATES: protein motif:HMM:NF012432.2
COORDINATES: protein motif:HMM:NF015431.2