Candidatus Endomicrobium trichonymphae plasmid pTGRD1, complete sequence.
type: Entry
definition: Candidatus Endomicrobium trichonymphae plasmid pTGRD1, complete sequence.
sequence version: NC_020420.1
sequence date: 2022-12-30
sequence: sequence
division: CON
label: NC_020420.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00232923
keyword: RefSeq
source: Candidatus Endomicrobium trichonymphae
organism: Candidatus Endomicrobium trichonymphae
taxonomy: Bacteria; Elusimicrobiota; Endomicrobiia; Endomicrobiales; Endomicrobiaceae; Endomicrobium.
reference: 1
references: 18391199
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP009511.1.\n\nOn Feb 28, 2013 this sequence version replaced NS_000192.1.\nThe wood-feeding termite Reticulitermes speratus (Isoptera;\nRhinotermitidae) was collected in Saitama, Japan. The entire gut\nwas removed from a worker termite, and a single cell of the\ncellulolytic protist Trichonympha agilis (Parabasalia;\nTrichonymphida) in the gut was physically isolated by using a\nmicromanipulator. In order to collect the intracellular symbionts\nof T. agilis, as-yet-uncultivated bacteria designated phylotype\nRs-D17 belonging to the candidate division Termite Group 1, the\nhost T. agilis cell was ruptured in buffer and bacterial cells\nwhich leaked out were collected with a glass capillary. These\ncollected cells were directly subjected to isothermal whole genome\namplification. After checking their purity by clone analysis of 16S\nrRNA gene and its adjacent ITS, the complete genome sequence was\ndetermined using ABI 3730 capillary sequencers and a GS20 system.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 00:47:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,200\nCDSs (total) :: 1,150\nGenes (coding) :: 1,141\nCDSs (with protein) :: 1,141\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 2\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 2 of 9\nPseudo Genes (incomplete) :: 4 of 9\nPseudo Genes (internal stop) :: …

sequence
subclass of: SO_0000155
sequence length: 11650
topology: circular
so has quality: SO_0000988
location: 1..11650
location: region:1-11650:1
RO_0002162: 1408204

NC_020420
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00232923
type: BioSample
SIO_000068: biosample

1
title: Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
author: Hongoh, Y.
author: Sharma, V.K.
author: Prakash, T.
author: Noda, S.
author: Taylor, T.D.
author: Kudo, T.
author: Sakaki, Y.
author: Toyoda, A.
author: Hattori, M.
author: Ohkuma, M.
journal: Proc Natl Acad Sci U S A
volume: 105
issue: 14
pages: 5555-5560
year: 2008
pubmed: 18391199

18391199
type: PubMed
SIO_000068: pubmed

2
title: Revised annotation of the genome of 'Ca. Endomicrobium trichonymphae' phylotype Rs-D17
author: Hongoh, Y.
author: Yoshioka, T.
author: Izawa, K.
journal: Unpublished

3
title: Direct Submission
author: Toyoda, A.
author: Hongoh, Y.
author: Sharma, V.K.
author: Hattori, M.
author: Ohkuma, M.
author: Sakaki, Y.
author: Izawa, K.
author: Yoshioka, T.
journal: Submitted (01-OCT-2007) Contact:Yuichi Hongoh Tokyo Institute of Technology, Department of Life Science and Technology; 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11650:1
position: 11650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11650:1:source
so part of: sequence
organism: Candidatus Endomicrobium trichonymphae
mol type: genomic DNA
strain: Rs-D17 genomovar Ri2008
isolation source: a single cell of termite (Reticulitermes speratus) gut protist
host: Trichonympha agilis
plasmid: pTGRD1

1408204
type: Taxonomy
SIO_000068: taxonomy

H0I88_RS05750
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05750
old locus tag: TGRD_P1-1
so part of: sequence
location: 1..1263
location: region:1-1263:1
so has part: feature:1-1263:1:exon
subclass of: SO_0000010

position:1263:1
position: 1263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1263:1:exon

H0I88_RS05750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05750
old locus tag: TGRD_P1-1
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWNEIIIELKEKIPTEWLEPIKEESFKDDILTLAVPDTYYAQKYETDYEPLIQNILKAKTGKAVGLQFQIVASKLLAEPVIKDEKPKAQLIKKTKFTGNPYFKNPAEFTKFAKETTKKEIEISIGQKVMTSMPTKYGAKDVITFSILNNKMFAYPNDKRKNAKVKMDIRFSNDTVKTFDLYRGQLETRGKGYGQLTTTHAKILLAVIHIWQEQGCKFADEGQACYVNTTVREIAKKLGYKSFSGADHERLLQKTKDLADLPMVIADRKEAHSFTILYDVSTHVIEDSEGNDTNRRTISIVFNPFIAKQLYDRKVILRKPQCYKIKNPTAIKFLLCYDKRIIKGFNLKMNISEVANDLEIETNKTSNIITNIKNAFQELNGYELNDSYSLHVELVKEGKEWIVIAERISKEKQQPLKALLA
SIO_010081: H0I88_RS05750
subclass of: SO_0000673
so part of: H0I88_RS05750
location: 1..1263
location: region:1-1263:1
so has part: feature:1-1263:1:exon

WP_015423766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1263:1:exon

H0I88_RS05755
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05755
old locus tag: TGRD_P1-2
old locus tag: TGRD_RS05565
so part of: sequence
location: 2257..2673
location: region:2257-2673:1
so has part: feature:2257-2673:1:exon
subclass of: SO_0000010

position:2257:1
position: 2257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2673:1
position: 2673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2257-2673:1:exon

H0I88_RS05755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05755
old locus tag: TGRD_P1-2
old locus tag: TGRD_RS05565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLICFVMLGCFVLTFVSCGKRSAMLQDVASVKIEEVKLENGENKTPPPDDPAPEDPETITKADRRVGIIAGMACMAIAFTGLAIYWMCCGSRKPFEFQVPQDEQNEKPDSEIPKLDNEVPEKPLVDANQDKSELNA
SIO_010081: H0I88_RS05755
subclass of: SO_0000673
so part of: H0I88_RS05755
location: 2257..2673
location: region:2257-2673:1
so has part: feature:2257-2673:1:exon

WP_015423767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2257-2673:1:exon

H0I88_RS05760
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05760
old locus tag: TGRD_P1-3
old locus tag: TGRD_RS05570
so part of: sequence
location: 3192..3860
location: region:3192-3860:1
so has part: feature:3192-3860:1:exon
subclass of: SO_0000010

position:3192:1
position: 3192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3860:1
position: 3860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3192-3860:1:exon

H0I88_RS05760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05760
old locus tag: TGRD_P1-3
old locus tag: TGRD_RS05570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFKKVICVYLTLVLFLTGCENLKSQIRGNQNTDASADQQTGNIIKSDNNGIIEKEETKKLDDKVIGLVVGDEKEKTSSKEPELRWQDKAKKYAGDAVHFLYEHKEQVYFVGIAVIYLLWKERLFQQQNHQDQMQWHLAQIQQLQQAQDQIQQMPVQDQIQYLQQLQNHFLQAQFNLQQLNQDPNLIQQFQQVQDQIQNGIGQLQAQVQQQIQPQLAQLQLG
SIO_010081: H0I88_RS05760
subclass of: SO_0000673
so part of: H0I88_RS05760
location: 3192..3860
location: region:3192-3860:1
so has part: feature:3192-3860:1:exon

WP_015423768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3192-3860:1:exon

H0I88_RS05765
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05765
old locus tag: TGRD_P1-4
old locus tag: TGRD_RS05575
so part of: sequence
location: 4058..4405
location: region:4058-4405:1
so has part: feature:4058-4405:1:exon
subclass of: SO_0000010

position:4058:1
position: 4058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4405:1
position: 4405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4058-4405:1:exon

H0I88_RS05765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05765
old locus tag: TGRD_P1-4
old locus tag: TGRD_RS05575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEYKKETDYYENDMRHTADAPKLEKRLRKSLNVFGLILLVLAVYLFGSFLLCSCYRRGVVGGVVADNNAVLPDAVTELKSDKKLINGAGLSLSERSVVAEPFRFGVIVPVVNNDG
SIO_010081: H0I88_RS05765
subclass of: SO_0000673
so part of: H0I88_RS05765
location: 4058..4405
location: region:4058-4405:1
so has part: feature:4058-4405:1:exon

WP_015423769.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4058-4405:1:exon

H0I88_RS05770
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05770
old locus tag: TGRD_RS06150
so part of: sequence
location: 4480..4617
location: region:4480-4617:1
so has part: feature:4480-4617:1:exon
subclass of: SO_0000010

position:4480:1
position: 4480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4617:1
position: 4617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4480-4617:1:exon

H0I88_RS05770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05770
old locus tag: TGRD_RS06150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTNNKYKSIENAFPINNPFRSSRTVQKALKIINKKVAKKKIKC
SIO_010081: H0I88_RS05770
subclass of: SO_0000673
so part of: H0I88_RS05770
location: 4480..4617
location: region:4480-4617:1
so has part: feature:4480-4617:1:exon

WP_158302865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4480-4617:1:exon

H0I88_RS05775
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05775
old locus tag: TGRD_RS05745
so part of: sequence
location: 4628..4834
location: region:4628-4834:1
so has part: feature:4628-4834:1:exon
subclass of: SO_0000010

position:4628:1
position: 4628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4834:1
position: 4834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4628-4834:1:exon

H0I88_RS05775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05775
old locus tag: TGRD_RS05745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIFAVILMLFVFLSGCQSKFITGIFKDKDENDVSTSTNASASEPTPTPTPTPTPTPTPTNAKWSWYW
SIO_010081: H0I88_RS05775
subclass of: SO_0000673
so part of: H0I88_RS05775
location: 4628..4834
location: region:4628-4834:1
so has part: feature:4628-4834:1:exon

WP_232501256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4628-4834:1:exon

H0I88_RS05780
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05780
old locus tag: TGRD_RS06155
so part of: sequence
location: 5446..5619
location: region:5446-5619:1
so has part: feature:5446-5619:1:exon
subclass of: SO_0000010

position:5446:1
position: 5446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5619:1
position: 5619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5446-5619:1:exon

H0I88_RS05780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05780
old locus tag: TGRD_RS06155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSHLNITSKEKDKEPLKNCYKCDVKRVCTDSPYYAPVDCQLDLFDNNILPVKSCVH
SIO_010081: H0I88_RS05780
subclass of: SO_0000673
so part of: H0I88_RS05780
location: 5446..5619
location: region:5446-5619:1
so has part: feature:5446-5619:1:exon

WP_158302866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5446-5619:1:exon

H0I88_RS05785
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05785
old locus tag: TGRD_P1-5
old locus tag: TGRD_RS06160
so part of: sequence
location: 7415..8611
location: region:7415-8611:1
so has part: feature:7415-8611:1:exon
subclass of: SO_0000010

position:7415:1
position: 7415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8611:1
position: 8611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7415-8611:1:exon

H0I88_RS05785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05785
old locus tag: TGRD_P1-5
old locus tag: TGRD_RS06160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGCENLKSRIRGNQNTDASADQQTGNIIKSGNNGIIEKEETKELDGKSFGLDANGNGSSLQGENTEKETPSEEPELMWQDKAKKYAGDAGHFLYEHKGKIAFAVVVVAGVYWFGIRPINGLPAQPPSQPPAQPPSQPPAQPPSQPPAQPPSQPPAQPPSQPPAQPPSQPPAQPPSQPPAQPPSQPPAQPLLPVQPLLHVRPEVLQLRQEQALQQYQQQQHEIEELFVPDAVDLFAALGADMTVLDVMLSELRSQITQLYRLQVRQLQEQLRLQEPQAQEQLLQRQLQERLILAQERQDLLQLRINNLRRHFRQYQAMPFLQIEYLEYQHRLTQQLLQQAQQQVQQRQEQQLAELAEQAQQVQQRQEQQLAELAEQAQQLAEQEQQQEQQLAELAEKL
SIO_010081: H0I88_RS05785
subclass of: SO_0000673
so part of: H0I88_RS05785
location: 7415..8611
location: region:7415-8611:1
so has part: feature:7415-8611:1:exon

WP_232501255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7415-8611:1:exon

H0I88_RS05790
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05790
old locus tag: TGRD_P1-6
old locus tag: TGRD_RS05595
so part of: sequence
location: 8648..9100
location: region:8648-9100:1
so has part: feature:8648-9100:1:exon
subclass of: SO_0000010

position:8648:1
position: 8648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9100:1
position: 9100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8648-9100:1:exon

H0I88_RS05790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05790
old locus tag: TGRD_P1-6
old locus tag: TGRD_RS05595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKIKDKYKLVENIFPINNPFRSSRTVQKALKIINKNFVCNIIVLSLLLCSCGKKQALLNTAITEKSEVVSELKSELAKIQKELKEKKEKLIEVQEELEKAIEVQEELEKENWQNLWELYDNRMGFFLLGLLTADLIVLGCICCTMCSCC
SIO_010081: H0I88_RS05790
subclass of: SO_0000673
so part of: H0I88_RS05790
location: 8648..9100
location: region:8648-9100:1
so has part: feature:8648-9100:1:exon

WP_125267030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8648-9100:1:exon

H0I88_RS05795
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05795
old locus tag: TGRD_P1-7
old locus tag: TGRD_RS05600
so part of: sequence
location: 9315..9662
location: region:9315-9662:1
so has part: feature:9315-9662:1:exon
subclass of: SO_0000010

position:9315:1
position: 9315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9662:1
position: 9662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9315-9662:1:exon

H0I88_RS05795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05795
old locus tag: TGRD_P1-7
old locus tag: TGRD_RS05600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEYKKETDYYENDMRHTADAPKLEKRLRKSLNVFGLILLVLAVYLFGSFLLCSCYRRGVVGGVVADNNAVLPDAVTELKSDKKLINGAGLSLSERSVVAEPFRFGVIVPVVNNDG
SIO_010081: H0I88_RS05795
subclass of: SO_0000673
so part of: H0I88_RS05795
location: 9315..9662
location: region:9315-9662:1
so has part: feature:9315-9662:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9315-9662:1:exon

H0I88_RS05800
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05800
old locus tag: TGRD_RS06165
so part of: sequence
location: 9737..9874
location: region:9737-9874:1
so has part: feature:9737-9874:1:exon
subclass of: SO_0000010

position:9737:1
position: 9737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9874:1
position: 9874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9737-9874:1:exon

H0I88_RS05800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05800
old locus tag: TGRD_RS06165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTNNKYKSIENAFPINNPFRSSRTVQKALKIINKKVAKKKIKC
SIO_010081: H0I88_RS05800
subclass of: SO_0000673
so part of: H0I88_RS05800
location: 9737..9874
location: region:9737-9874:1
so has part: feature:9737-9874:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9737-9874:1:exon

H0I88_RS06525
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS06525
so part of: sequence
location: 9885..10121
location: region:9885-10121:1
so has part: feature:9885-10121:1:exon
subclass of: SO_0000010

position:9885:1
position: 9885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10121:1
position: 10121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9885-10121:1:exon

H0I88_RS06525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS06525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIFAVILMLFVFLSGCQSKFITGIFKDKDENDVSTSTNASASEPTPTPTPTPTPTPTPTPTPTPTPSPMPANWYRYR
SIO_010081: H0I88_RS06525
subclass of: SO_0000673
so part of: H0I88_RS06525
location: 9885..10121
location: region:9885-10121:1
so has part: feature:9885-10121:1:exon

WP_269763563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9885-10121:1:exon

H0I88_RS05810
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05810
old locus tag: TGRD_RS06170
so part of: sequence
location: 10382..10534
location: region:10382-10534:1
so has part: feature:10382-10534:1:exon
subclass of: SO_0000010

position:10382:1
position: 10382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10534:1
position: 10534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10382-10534:1:exon

H0I88_RS05810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05810
old locus tag: TGRD_RS06170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDCKALENCRQCKNYDSEQGLCKLNLYYVYGEESVDMCAYLAERTKTDKD
SIO_010081: H0I88_RS05810
subclass of: SO_0000673
so part of: H0I88_RS05810
location: 10382..10534
location: region:10382-10534:1
so has part: feature:10382-10534:1:exon

WP_158302867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10382-10534:1:exon

H0I88_RS05815
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05815
old locus tag: TGRD_P1-8
old locus tag: TGRD_RS05610
so part of: sequence
location: 10543..10842
location: region:10543-10842:1
so has part: feature:10543-10842:1:exon
subclass of: SO_0000010

position:10543:1
position: 10543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10842:1
position: 10842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10543-10842:1:exon

H0I88_RS05815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05815
old locus tag: TGRD_P1-8
old locus tag: TGRD_RS05610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIIILLVVFLMFFGCYKKPITNIPVPEEIEEIKIPDVYYFSDMFTACNCFLAISTLFFLATVMFAGYSFLGKDFDINDYRRPVELGNRIVPQRGNNI
SIO_010081: H0I88_RS05815
subclass of: SO_0000673
so part of: H0I88_RS05815
location: 10543..10842
location: region:10543-10842:1
so has part: feature:10543-10842:1:exon

WP_015423772.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10543-10842:1:exon

H0I88_RS05820
type: Gene
subclass of: SO_0000704
RO_0002162: 1408204
locus tag: H0I88_RS05820
old locus tag: TGRD_P1-9
old locus tag: TGRD_RS05615
so part of: sequence
location: 10881..11201
location: region:10881-11201:1
so has part: feature:10881-11201:1:exon
subclass of: SO_0000010

position:10881:1
position: 10881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11201:1
position: 11201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10881-11201:1:exon

H0I88_RS05820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1408204
locus tag: H0I88_RS05820
old locus tag: TGRD_P1-9
old locus tag: TGRD_RS05615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSVFLSGCHRKVITGISKNENDVPTSTNTPAPEPTSTPMPTSTPAFMDCFPKYKAPSSTPAPLDADDYYDNWTKCVLLYVDDDGNWVNGKHKHSEAHKRLLLKDL
SIO_010081: H0I88_RS05820
subclass of: SO_0000673
so part of: H0I88_RS05820
location: 10881..11201
location: region:10881-11201:1
so has part: feature:10881-11201:1:exon

WP_125267031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10881-11201:1:exon