Halobacterium hubeiense strain JI20-1 plasmid pSTJ003, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
Submitted (16-MAR-2015) UH, Department of Biosciences and Institute of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University of, Helsinki, Finland
REFSEQ INFORMATION: The reference sequence is identical to\nLN831305.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 01:01:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,356\nCDSs (total) :: 3,304\nGenes (coding) :: 3,264\nCDSs (with protein) :: 3,264\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 15 of 40\nPseudo Genes (incomplete) :: 29 of 40\nPseudo Genes (internal stop) :: 5 of 40\nPseudo Genes (multiple problems) :: 7 of 40\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364385.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364388.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364390.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594621.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594620.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890407.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISH28 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008848061.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594617.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594616.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594615.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594612.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048650.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048649.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594609.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011844707.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_004594603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594602.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004048647.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008005422.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594594.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594592.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222419.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222424.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594579.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910470.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594575.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_011222427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222428.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594571.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008457114.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015788917.1
COORDINATES: similar to AA sequence:RefSeq:WP_008310058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594567.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594554.1
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_008312328.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006053905.1
COORDINATES: protein motif:HMM:NF016906.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF024091.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010903466.1
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_010902449.1
COORDINATES: similar to AA sequence:RefSeq:WP_005555320.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008387949.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594563.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691176.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516268.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594558.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: protein motif:HMM:NF025118.2
COORDINATES: similar to AA sequence:RefSeq:WP_010890474.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599660.1
COORDINATES: similar to AA sequence:RefSeq:WP_008320298.1
COORDINATES: protein motif:HMM:NF021350.2
AAA-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008318969.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007109532.1
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007992860.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289604.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977091.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008419153.1
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_008424874.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289753.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890411.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904014.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966323.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043317.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181008.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006181006.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_004966661.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258642.1
orc1/cdc6 family replication initiation protein