Halobacterium hubeiense strain JI20-1 plasmid pSTJ002, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
Submitted (16-MAR-2015) UH, Department of Biosciences and Institute of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University of, Helsinki, Finland
REFSEQ INFORMATION: The reference sequence is identical to\nLN831304.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 01:01:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,356\nCDSs (total) :: 3,304\nGenes (coding) :: 3,264\nCDSs (with protein) :: 3,264\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 15 of 40\nPseudo Genes (incomplete) :: 29 of 40\nPseudo Genes (internal stop) :: 5 of 40\nPseudo Genes (multiple problems) :: 7 of 40\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014865890.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667196.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276489.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009367590.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387755.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183490.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299306.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183488.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299305.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
heavy metal-associated domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006432890.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222424.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594579.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364407.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107504.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013881802.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904033.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_008580521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419404.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013880493.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289744.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143097.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526014.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182403.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062211.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342076.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526017.1
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: similar to AA sequence:RefSeq:WP_007141891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413627.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413626.1
COORDINATES: similar to AA sequence:RefSeq:WP_006884413.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413624.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594223.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413622.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180824.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004516850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526030.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825395.1
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318147.1
DUF2080 family transposase-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005558189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526067.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006825412.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517742.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458767.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458768.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458769.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580598.1
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364333.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: similar to AA sequence:RefSeq:WP_013881877.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004965691.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012289716.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890425.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007995259.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890418.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890417.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628335.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048321.1
COORDINATES: similar to AA sequence:RefSeq:WP_011322572.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019236.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF024091.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890413.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_008308665.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258918.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008586676.1
COORDINATES: similar to AA sequence:RefSeq:WP_017341938.1
COORDINATES: similar to AA sequence:RefSeq:WP_014031059.1
COORDINATES: similar to AA sequence:RefSeq:WP_007345802.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598689.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533246.1
COORDINATES: similar to AA sequence:RefSeq:WP_011323565.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628344.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006111124.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051278.1
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_014031063.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599862.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598692.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111127.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825214.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444941.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825219.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048547.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289738.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048542.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010904190.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528029.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007992685.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364356.1
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: protein motif:HMM:NF020509.2
COORDINATES: similar to AA sequence:RefSeq:WP_008456916.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443153.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182467.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344000.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061954.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968516.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571238.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004061732.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF021525.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015755375.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_006827317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599534.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053455.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827446.1
COORDINATES: similar to AA sequence:RefSeq:WP_014281667.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041381.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005579635.1