Bacillus mycoides strain BPN36/3 plasmid p481.
Bacillus mycoides (Bacillus weihenstephanensis)
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
The dynamics of pangenome and proteome of selected Bacillus cereus sensu lato representatives from the primary and anthropologically changes environments
Submitted (11-FEB-2019) Department of Microbiology, University of Bialystok, 1J Ciolkowskiego, Bialystok 15-245, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP035998.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.227x\nSequencing Technology :: Illumina MiSeq and MiniIon Oxford\n Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 05:47:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,793\nCDSs (total) :: 5,640\nGenes (coding) :: 5,452\nCDSs (with protein) :: 5,452\nGenes (RNA) :: 153\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 106\nncRNAs :: 5\nPseudo Genes (total) :: 188\nCDSs (without protein) :: 188\nPseudo Genes (ambiguous residues) :: 0 of 188\nPseudo Genes (frameshifted) :: 68 of 188\nPseudo Genes (incomplete) :: 122 of 188\nPseudo Genes (internal stop) :: 47 of 188\nPseudo Genes (multiple problems) :: 42 of 188\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_018768059.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016102551.1
COORDINATES: similar to AA sequence:RefSeq:WP_016093880.1
COORDINATES: similar to AA sequence:RefSeq:WP_001239395.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016105292.1
COORDINATES: similar to AA sequence:RefSeq:WP_000762755.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016096850.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000755677.1
COORDINATES: similar to AA sequence:RefSeq:WP_003203564.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_012259897.1
COORDINATES: similar to AA sequence:RefSeq:WP_000679520.1
COORDINATES: similar to AA sequence:RefSeq:WP_000354585.1
COORDINATES: similar to AA sequence:RefSeq:WP_012199720.1
COORDINATES: similar to AA sequence:RefSeq:WP_000158321.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_016093868.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016106902.1
COORDINATES: similar to AA sequence:RefSeq:WP_016106903.1
COORDINATES: similar to AA sequence:RefSeq:WP_002204169.1
COORDINATES: similar to AA sequence:RefSeq:WP_016513775.1
COORDINATES: similar to AA sequence:RefSeq:WP_002035210.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002106912.1
COORDINATES: similar to AA sequence:RefSeq:WP_000511370.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016096731.1
COORDINATES: similar to AA sequence:RefSeq:WP_016112353.1
COORDINATES: similar to AA sequence:RefSeq:WP_002203029.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016119174.1
COORDINATES: similar to AA sequence:RefSeq:WP_016107592.1
COORDINATES: similar to AA sequence:RefSeq:WP_000688773.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002068844.1
COORDINATES: similar to AA sequence:RefSeq:WP_016090861.1
IS200/IS605 family element RNA-guided endonuclease TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_000949364.1
COORDINATES: similar to AA sequence:RefSeq:WP_001009605.1
GO:0031012 - extracellular matrix [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000280048.1
COORDINATES: similar to AA sequence:RefSeq:WP_016136174.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002204073.1
COORDINATES: similar to AA sequence:RefSeq:WP_001167046.1
alpha/beta-type small acid-soluble spore protein
COORDINATES: similar to AA sequence:RefSeq:WP_016107601.1
COORDINATES: similar to AA sequence:RefSeq:WP_002175119.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000461961.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_000041333.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016119189.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012593230.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002090478.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016512820.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_016081045.1
COORDINATES: similar to AA sequence:RefSeq:WP_016113507.1
COORDINATES: similar to AA sequence:RefSeq:WP_000028472.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002203043.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000413138.1
COORDINATES: similar to AA sequence:RefSeq:WP_001043938.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002065384.1
COORDINATES: similar to AA sequence:RefSeq:WP_000937351.1
COORDINATES: similar to AA sequence:RefSeq:WP_001106179.1
COORDINATES: similar to AA sequence:RefSeq:WP_000789574.1
COORDINATES: protein motif:HMM:NF021498.2
COORDINATES: protein motif:HMM:NF039975.1
COORDINATES: similar to AA sequence:RefSeq:WP_001231338.1
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_017561252.1
COORDINATES: similar to AA sequence:RefSeq:WP_017561255.1
COORDINATES: similar to AA sequence:RefSeq:WP_000846668.1
COORDINATES: similar to AA sequence:RefSeq:WP_001105579.1
COORDINATES: similar to AA sequence:RefSeq:WP_002164329.1
COORDINATES: similar to AA sequence:RefSeq:WP_016135835.1
COORDINATES: similar to AA sequence:RefSeq:WP_001152301.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016090563.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002065446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012259872.1
COORDINATES: similar to AA sequence:RefSeq:WP_002026152.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013245260.1
COORDINATES: similar to AA sequence:RefSeq:WP_016127795.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001124404.1
COORDINATES: similar to AA sequence:RefSeq:WP_002069605.1
GO:0047355 - CDP-glycerol glycerophosphotransferase activity [Evidence IEA]
CDP-glycerol glycerophosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000465157.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_000699373.1
COORDINATES: similar to AA sequence:RefSeq:WP_000251215.1
GO:0003824 - catalytic activity [Evidence IEA]
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_003193065.1
COORDINATES: similar to AA sequence:RefSeq:WP_016107723.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_016093948.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000073386.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000772271.1
COORDINATES: similar to AA sequence:RefSeq:WP_002169373.1
COORDINATES: similar to AA sequence:RefSeq:WP_016127790.1
COORDINATES: similar to AA sequence:RefSeq:WP_000122950.1
COORDINATES: similar to AA sequence:RefSeq:WP_003296088.1
GO:0008168 - methyltransferase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004401941.1
COORDINATES: similar to AA sequence:RefSeq:WP_017560596.1
COORDINATES: similar to AA sequence:RefSeq:WP_002191572.1
COORDINATES: similar to AA sequence:RefSeq:WP_002144170.1
COORDINATES: similar to AA sequence:RefSeq:WP_001098388.1
COORDINATES: similar to AA sequence:RefSeq:WP_000185204.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001257881.1
COORDINATES: similar to AA sequence:RefSeq:WP_016127799.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002144155.1
COORDINATES: similar to AA sequence:RefSeq:WP_000129164.1
COORDINATES: similar to AA sequence:RefSeq:WP_000780688.1
COORDINATES: similar to AA sequence:RefSeq:WP_016127798.1
COORDINATES: similar to AA sequence:RefSeq:WP_016119207.1
COORDINATES: similar to AA sequence:RefSeq:WP_016127797.1
COORDINATES: similar to AA sequence:RefSeq:WP_016119209.1
COORDINATES: similar to AA sequence:RefSeq:WP_000140899.1
COORDINATES: similar to AA sequence:RefSeq:WP_000522783.1
COORDINATES: similar to AA sequence:RefSeq:WP_016079004.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
ArpU family phage packaging/lysis transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000713479.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097159.1
COORDINATES: similar to AA sequence:RefSeq:WP_016513366.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002069661.1
COORDINATES: similar to AA sequence:RefSeq:WP_016093721.1
GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016097107.1
COORDINATES: similar to AA sequence:RefSeq:WP_003192781.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097105.1
putative mucin/carbohydrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000702509.1
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016108414.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016098520.1
COORDINATES: similar to AA sequence:RefSeq:WP_000503051.1
COORDINATES: similar to AA sequence:RefSeq:WP_001255753.1
GO:0031177 - phosphopantetheine binding [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
non-ribosomal peptide synthase/polyketide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_002169355.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_001172934.1
COORDINATES: similar to AA sequence:RefSeq:WP_002001752.1
COORDINATES: similar to AA sequence:RefSeq:WP_001141566.1
COORDINATES: similar to AA sequence:RefSeq:WP_000872736.1
COORDINATES: similar to AA sequence:RefSeq:WP_002204037.1
COORDINATES: similar to AA sequence:RefSeq:WP_000682209.1
COORDINATES: similar to AA sequence:RefSeq:WP_000125775.1
COORDINATES: similar to AA sequence:RefSeq:WP_000645944.1
COORDINATES: similar to AA sequence:RefSeq:WP_017673837.1
COORDINATES: similar to AA sequence:RefSeq:WP_016077325.1
COORDINATES: similar to AA sequence:RefSeq:WP_016094626.1
COORDINATES: similar to AA sequence:RefSeq:WP_001209143.1
COORDINATES: similar to AA sequence:RefSeq:WP_016093784.1
COORDINATES: similar to AA sequence:RefSeq:WP_016103999.1
COORDINATES: similar to AA sequence:RefSeq:WP_002167247.1
COORDINATES: similar to AA sequence:RefSeq:WP_000127945.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0070395 - lipoteichoic acid biosynthetic process [Evidence IEA]
D-alanyl-lipoteichoic acid biosynthesis protein DltB
COORDINATES: similar to AA sequence:RefSeq:WP_016093780.1
COORDINATES: similar to AA sequence:RefSeq:WP_018753940.1
COORDINATES: similar to AA sequence:RefSeq:WP_003354012.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_019225843.1
COORDINATES: similar to AA sequence:RefSeq:WP_000028493.1
COORDINATES: similar to AA sequence:RefSeq:WP_010529118.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_002016849.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187121.1
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_016095042.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016119247.1
COORDINATES: similar to AA sequence:RefSeq:WP_000385106.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024053.2
COORDINATES: similar to AA sequence:RefSeq:WP_002016873.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_000722982.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012259899.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097754.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016078424.1
COORDINATES: similar to AA sequence:RefSeq:WP_002115043.1
COORDINATES: similar to AA sequence:RefSeq:WP_000040543.1
amino acid permease C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000365964.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086557922.1
COORDINATES: similar to AA sequence:RefSeq:WP_002035070.1
COORDINATES: similar to AA sequence:RefSeq:WP_016102361.1
COORDINATES: similar to AA sequence:RefSeq:WP_018767550.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_001065623.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000331721.1
COORDINATES: similar to AA sequence:RefSeq:WP_000753346.1
COORDINATES: similar to AA sequence:RefSeq:WP_002016892.1
COORDINATES: similar to AA sequence:RefSeq:WP_000528570.1
COORDINATES: similar to AA sequence:RefSeq:WP_002139645.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187069.1
COORDINATES: similar to AA sequence:RefSeq:WP_002069022.1
COORDINATES: protein motif:HMM:NF014373.2
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002104150.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0003333 - amino acid transmembrane transport [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018224.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_016103599.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016119291.1
COORDINATES: similar to AA sequence:RefSeq:WP_000836979.1
phosphatidylinositol-specific phospholipase C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001055915.1
IS4-like element ISBce2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001190822.1
COORDINATES: similar to AA sequence:RefSeq:WP_006639354.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
COORDINATES: similar to AA sequence:RefSeq:WP_000565447.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: similar to AA sequence:RefSeq:WP_016717909.1
COORDINATES: similar to AA sequence:RefSeq:WP_002069011.1
COORDINATES: similar to AA sequence:RefSeq:WP_016130622.1
COORDINATES: similar to AA sequence:RefSeq:WP_016087214.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002069003.1
GO:0008658 - penicillin binding [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003325048.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000954526.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000195524.1
COORDINATES: similar to AA sequence:RefSeq:WP_000714657.1
GO:0030420 - establishment of competence for transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017560172.1
COORDINATES: similar to AA sequence:RefSeq:WP_001037519.1
COORDINATES: similar to AA sequence:RefSeq:WP_000606463.1
COORDINATES: similar to AA sequence:RefSeq:WP_000084139.1
COORDINATES: similar to AA sequence:RefSeq:WP_016136195.1
COORDINATES: protein motif:HMM:NF024473.2
COORDINATES: similar to AA sequence:RefSeq:WP_000267707.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016096263.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
2,3-diaminopropionate biosynthesis protein SbnB
COORDINATES: similar to AA sequence:RefSeq:WP_002107069.1
COORDINATES: protein motif:HMM:NF012966.2
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039440.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_000066844.1
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: protein motif:HMM:TIGR00516.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF012656.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012500.2
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_000746297.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF003673.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014686.2
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000377619.1
COORDINATES: protein motif:HMM:NF019988.2
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020130.2
COORDINATES: protein motif:HMM:NF025757.2
BtrH N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR04018.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
YpdA family putative bacillithiol disulfide reductase
GO:0000036 - acyl carrier activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023428.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: protein motif:HMM:NF014758.2
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_000566928.1
GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: similar to AA sequence:RefSeq:WP_000014587.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF020121.2
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
beta-galactosidase trimerization domain-containing protein
COORDINATES: protein motif:HMM:NF013227.2
DegT/DnrJ/EryC1/StrS aminotransferase family protein
COORDINATES: protein motif:HMM:NF012695.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF027681.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:TIGR03026.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012512.2
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03945.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
2,3-diaminopropionate biosynthesis protein SbnA
COORDINATES: similar to AA sequence:RefSeq:WP_000586578.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF017946.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_002189490.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016107024.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611090.1
COORDINATES: similar to AA sequence:RefSeq:WP_002139648.1
COORDINATES: similar to AA sequence:RefSeq:WP_002139649.1
COORDINATES: similar to AA sequence:RefSeq:WP_002166775.1
COORDINATES: similar to AA sequence:RefSeq:WP_002166777.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611143.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016119283.1
hybrid sensor histidine kinase/response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_000158811.1
COORDINATES: similar to AA sequence:RefSeq:WP_002014078.1
COORDINATES: similar to AA sequence:RefSeq:WP_002167261.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002016617.1
COORDINATES: similar to AA sequence:RefSeq:WP_017357939.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016096711.1
COORDINATES: similar to AA sequence:RefSeq:WP_002146509.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016096712.1
COORDINATES: similar to AA sequence:RefSeq:WP_002204055.1
COORDINATES: similar to AA sequence:RefSeq:WP_016077321.1
COORDINATES: similar to AA sequence:RefSeq:WP_006924155.1
COORDINATES: similar to AA sequence:RefSeq:WP_002203159.1
COORDINATES: similar to AA sequence:RefSeq:WP_000511361.1
COORDINATES: similar to AA sequence:RefSeq:WP_016127480.1
COORDINATES: similar to AA sequence:RefSeq:WP_002204063.1
COORDINATES: similar to AA sequence:RefSeq:WP_002151159.1
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002069076.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002069077.1
COORDINATES: similar to AA sequence:RefSeq:WP_001034047.1
COORDINATES: similar to AA sequence:RefSeq:WP_016130611.1
COORDINATES: similar to AA sequence:RefSeq:WP_000543747.1
COORDINATES: similar to AA sequence:RefSeq:WP_000806256.1
COORDINATES: similar to AA sequence:RefSeq:WP_018767796.1
COORDINATES: similar to AA sequence:RefSeq:WP_000491391.1
COORDINATES: similar to AA sequence:RefSeq:WP_002170718.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983776.1
COORDINATES: similar to AA sequence:RefSeq:WP_001035530.1
COORDINATES: similar to AA sequence:RefSeq:WP_016096781.1
COORDINATES: similar to AA sequence:RefSeq:WP_000472908.1
COORDINATES: similar to AA sequence:RefSeq:WP_000505686.1
COORDINATES: similar to AA sequence:RefSeq:WP_000576238.1
COORDINATES: similar to AA sequence:RefSeq:WP_000895162.1
COORDINATES: similar to AA sequence:RefSeq:WP_000185754.1
COORDINATES: protein motif:HMM:NF024241.2
COORDINATES: similar to AA sequence:RefSeq:WP_002191942.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000609747.1
COORDINATES: similar to AA sequence:RefSeq:WP_002188102.1
COORDINATES: similar to AA sequence:RefSeq:WP_001268480.1
COORDINATES: similar to AA sequence:RefSeq:WP_000481867.1
COORDINATES: similar to AA sequence:RefSeq:WP_003337482.1
COORDINATES: similar to AA sequence:RefSeq:WP_018674046.1
COORDINATES: similar to AA sequence:RefSeq:WP_001068596.1
COORDINATES: similar to AA sequence:RefSeq:WP_016100079.1
COORDINATES: similar to AA sequence:RefSeq:WP_016091879.1
COORDINATES: similar to AA sequence:RefSeq:WP_000120819.1
COORDINATES: similar to AA sequence:RefSeq:WP_000340028.1
COORDINATES: similar to AA sequence:RefSeq:WP_000738546.1
COORDINATES: similar to AA sequence:RefSeq:WP_000486296.1
COORDINATES: similar to AA sequence:RefSeq:WP_002011238.1
GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016095007.1
COORDINATES: similar to AA sequence:RefSeq:WP_001004431.1
COORDINATES: similar to AA sequence:RefSeq:WP_001092158.1
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006097509.1
COORDINATES: similar to AA sequence:RefSeq:WP_001053999.1
IS4-like element IS231E family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002139654.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187697.1
COORDINATES: similar to AA sequence:RefSeq:WP_016112472.1
COORDINATES: protein motif:HMM:NF015288.2
COORDINATES: similar to AA sequence:RefSeq:WP_002130397.1
COORDINATES: similar to AA sequence:RefSeq:WP_000432338.1
COORDINATES: similar to AA sequence:RefSeq:WP_000067648.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002035020.1
GO:0006260 - DNA replication [Evidence IEA]
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000520752.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016128425.1
COORDINATES: similar to AA sequence:RefSeq:WP_000143308.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187832.1
COORDINATES: similar to AA sequence:RefSeq:WP_000923992.1
COORDINATES: similar to AA sequence:RefSeq:WP_016107046.1
COORDINATES: similar to AA sequence:RefSeq:WP_000063697.1
COORDINATES: similar to AA sequence:RefSeq:WP_002191968.1
COORDINATES: similar to AA sequence:RefSeq:WP_002191969.1
COORDINATES: similar to AA sequence:RefSeq:WP_017674551.1
COORDINATES: similar to AA sequence:RefSeq:WP_000550850.1
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_002191972.1
COORDINATES: similar to AA sequence:RefSeq:WP_001173332.1
COORDINATES: similar to AA sequence:RefSeq:WP_001258276.1
COORDINATES: similar to AA sequence:RefSeq:WP_000650795.1
COORDINATES: similar to AA sequence:RefSeq:WP_002090849.1
COORDINATES: similar to AA sequence:RefSeq:WP_017674690.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002204200.1
COORDINATES: similar to AA sequence:RefSeq:WP_000497574.1
COORDINATES: similar to AA sequence:RefSeq:WP_000062186.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187866.1
COORDINATES: similar to AA sequence:RefSeq:WP_000087502.1
COORDINATES: similar to AA sequence:RefSeq:WP_000514058.1
COORDINATES: similar to AA sequence:RefSeq:WP_000901832.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002090826.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187882.1
SpaA isopeptide-forming pilin-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_002191987.1
COORDINATES: similar to AA sequence:RefSeq:WP_002090821.1
COORDINATES: similar to AA sequence:RefSeq:WP_002090818.1
COORDINATES: similar to AA sequence:RefSeq:WP_002169605.1
AimR family lysis-lysogeny pheromone receptor
COORDINATES: similar to AA sequence:RefSeq:WP_016102536.1
COORDINATES: similar to AA sequence:RefSeq:WP_016514214.1
COORDINATES: similar to AA sequence:RefSeq:WP_016119132.1
COORDINATES: similar to AA sequence:RefSeq:WP_002136390.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000926951.1
COORDINATES: similar to AA sequence:RefSeq:WP_002204084.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002150988.1