Bradyrhizobium septentrionale strain 1S1 plasmid pBs1S1c, complete sequence.
type: Entry
definition: Bradyrhizobium septentrionale strain 1S1 plasmid pBs1S1c, complete sequence.
sequence version: NZ_CP088286.1
sequence date: 2023-03-20
sequence: sequence
division: CON
label: NZ_CP088286.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14360499
keyword: RefSeq
source: Bradyrhizobium septentrionale
organism: Bradyrhizobium septentrionale
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Bradyrhizobium.
reference: 1
references: 34106824
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP088286.1.\nBacteria and source DNA available from Eden S.P. Bromfield,\nAgriculture and Agri-Food Canada, 960 Carling Ave., Ottawa ON K1A\n0C6.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2021\nAssembly Method :: Flye v. v2.9\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 386.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 09:26:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,999\nCDSs (total) :: 9,929\nGenes (coding) :: 9,364\nCDSs (with protein) :: 9,364\nGenes (RNA) :: 70\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 566\nCDSs (without protein) :: 565\nPseudo Genes (ambiguous residues) :: 0 of 566\nPseudo Genes (frameshifted) :: 280 of 566\nPseudo Genes (incomplete) :: 386 of 566\nPseudo Genes (internal stop) :: 50 of 566\nPseudo Genes (multiple problems) :: 137 of 566\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22168
topology: circular
so has quality: SO_0000988
location: 1..22168
location: region:1-22168:1
RO_0002162: 1404411

NZ_CP088286
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14360499
type: BioSample
SIO_000068: biosample

1
title: Bradyrhizobium septentrionale sp. nov. (sv. septentrionale) and Bradyrhizobium quebecense sp. nov. (sv. septentrionale) associated with legumes native to Canada possess rearranged symbiosis genes and numerous insertion sequences
author: Bromfield, E.S.P.
author: Cloutier, S.
journal: Int J Syst Evol Microbiol 71 (6) (2021)
pubmed: 34106824

34106824
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Bromfield, E.S.P.
author: Cloutier, S.
journal: Submitted (19-NOV-2021) ORDC, Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario K1A 0C6, Canada

3
title: Direct Submission
author: Bromfield, E.S.P.
journal: Submitted (17-SEP-2021) ORDC, Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario K1A 0C6, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22168:1
position: 22168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22168:1:source
so part of: sequence
organism: Bradyrhizobium septentrionale
mol type: genomic DNA
strain: 1S1
isolation source: Root nodule from soybean plant inoculated with root zone soil from Amphicarpaea bracteata
host: Glycine max cv. AC Glengarry
type material: type strain of Bradyrhizobium septentrionale
plasmid: pBs1S1c
country: Canada: Gatineau, Quebec
collection date: 2007
note: symbiovar septentrionalis

1404411
type: Taxonomy
SIO_000068: taxonomy

HAP48_RS50355
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS50355
so part of: sequence
location: complement(252..689)
location: region:252-689:-1
so has part: feature:252-689:-1:exon
subclass of: SO_0000010

position:252:-1
position: 252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689:-1
position: 689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252-689:-1:exon

HAP48_RS50355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS50355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008129375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MTAVNLVRIDADKKMARFYKLDVQPTLFGEWAVIREWGRIGRGGTVRSTPYGTASDRQWRKKITRHEPSHVRLWQARHPPRYAAYLIPSSPTFPHSSCFPSQLLLAAIGSARSVLNNSTGRGSGVSIPSLQIHFSKTSVQRFGRF
SIO_010081: HAP48_RS50355
subclass of: SO_0000673
so part of: HAP48_RS50355
location: complement(252..689)
location: region:252-689:-1
so has part: feature:252-689:-1:exon

WP_275949213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:252-689:-1:exon

HAP48_RS49140
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49140
old locus tag: HAP48_0049140
so part of: sequence
location: complement(686..1255)
location: region:686-1255:-1
so has part: feature:686-1255:-1:exon
subclass of: SO_0000010

position:686:-1
position: 686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1255:-1
position: 1255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686-1255:-1:exon

HAP48_RS49140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49140
old locus tag: HAP48_0049140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSKSSAQNRLIGYARVSTTGQTLDAQLAQLKAAGCAVIFKDTASGARVDRKELQRMLGKLEPGDVVTVTRIDRLARSLFDLFAIVQRINQGGAVFRSIAEPWADTGTSTGRMMLAVMAGMADVERDLIRTRTAEGRARATARGQHMGRPPKLTPEQKREALARREAGEPPAEIARSYNVNRMTITRLTA
SIO_010081: HAP48_RS49140
subclass of: SO_0000673
so part of: HAP48_RS49140
location: complement(686..1255)
location: region:686-1255:-1
so has part: feature:686-1255:-1:exon

WP_224497347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686-1255:-1:exon

HAP48_RS49145
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49145
old locus tag: HAP48_0049145
pseudo: true
so part of: sequence
location: complement(<2816..>3163)
location: region:2816-3163:-1
so has part: feature:2816-3163:-1:exon
subclass of: SO_0000010

position:2816:-1
position: 2816
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:3163:-1
position: 3163
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2816-3163:-1:exon

HAP48_RS49145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49145
old locus tag: HAP48_0049145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011084518.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21 family transposase
SIO_010081: HAP48_RS49145
subclass of: SO_0000673
so part of: HAP48_RS49145
location: complement(<2816..>3163)
location: region:2816-3163:-1
so has part: feature:2816-3163:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2816-3163:-1:exon

HAP48_RS49150
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49150
old locus tag: HAP48_0049150
so part of: sequence
location: complement(3557..3955)
location: region:3557-3955:-1
so has part: feature:3557-3955:-1:exon
subclass of: SO_0000010

position:3557:-1
position: 3557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3955:-1
position: 3955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3557-3955:-1:exon

HAP48_RS49150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49150
old locus tag: HAP48_0049150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAENKKLPFMSIDENGMRAGKLGEEYAKWVLDILRNFVVVAFLFFIAEMSGKWYMWGLAIVGAIALYQFVFAYVNQAQFNLGPAREGGPTGVDILLRIFLILVASAITAALTLSSIAAFLAVIKEIAAVQAK
SIO_010081: HAP48_RS49150
subclass of: SO_0000673
so part of: HAP48_RS49150
location: complement(3557..3955)
location: region:3557-3955:-1
so has part: feature:3557-3955:-1:exon

WP_224497346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3557-3955:-1:exon

HAP48_RS49155
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49155
old locus tag: HAP48_0049155
so part of: sequence
location: complement(4409..5368)
location: region:4409-5368:-1
so has part: feature:4409-5368:-1:exon
subclass of: SO_0000010

position:4409:-1
position: 4409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5368:-1
position: 5368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4409-5368:-1:exon

HAP48_RS49155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49155
old locus tag: HAP48_0049155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKPAPKAPAMTTALSADALMGKSQTYIGRALAAKAARSMGEYQLWASLALELVGKAALAKIHPCLVADPNSSASLFAAAGRSVDTDIKTIIAKTVFDRLAHVSKRFDESTKKFCTNMSEKQNAELHSGEAPFEGVIASSWEGRYWHTAEIILEASDSSIEAWLGADKAKAPKELLAEYTHATEQAAKVRVQTAADAFGARPRKEREEADAKADAIGLWNVRNSFRQHADDIWEAECPACKSRSFLAGVKYDEEVSEDDNEDDPYEELVDVSYVAEEFLCPYCNLHLESRDSIEAVGLNVDRIKTETRQREYEPDYGND
SIO_010081: HAP48_RS49155
subclass of: SO_0000673
so part of: HAP48_RS49155
location: complement(4409..5368)
location: region:4409-5368:-1
so has part: feature:4409-5368:-1:exon

WP_224497345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4409-5368:-1:exon

HAP48_RS49160
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49160
old locus tag: HAP48_0049160
so part of: sequence
location: complement(5365..6048)
location: region:5365-6048:-1
so has part: feature:5365-6048:-1:exon
subclass of: SO_0000010

position:5365:-1
position: 5365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6048:-1
position: 6048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5365-6048:-1:exon

HAP48_RS49160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49160
old locus tag: HAP48_0049160
inference: COORDINATES: protein motif:HMM:NF014698.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TauD/TfdA family dioxygenase
translation: MQANPTPIDQLNLAGRVLQDGWFKSTVTEVGHDMHSAPETIAMLLGKPITGRAGQKIEPLMPTEPARANAKSLSVVHGLGSFPMHTDGAHRLQPPRFVVLVCASPGRSPVPTTLMRFRDLQIGTSERAQLETAPFLVRNGRRSFYSTICSRSRPFIRFDAGCMVPQSSESETSVKLIAHRANEVGFTPVHWRTGDVLVIDNWNVLHGRGLGVSEASSDRKLLRVSVQ
SIO_010081: HAP48_RS49160
subclass of: SO_0000673
so part of: HAP48_RS49160
location: complement(5365..6048)
location: region:5365-6048:-1
so has part: feature:5365-6048:-1:exon

WP_224497344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5365-6048:-1:exon

HAP48_RS49165
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49165
old locus tag: HAP48_0049165
so part of: sequence
location: complement(6356..6661)
location: region:6356-6661:-1
so has part: feature:6356-6661:-1:exon
subclass of: SO_0000010

position:6356:-1
position: 6356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6661:-1
position: 6661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6356-6661:-1:exon

HAP48_RS49165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49165
old locus tag: HAP48_0049165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGAAKEMMLQREGMTGVAEEVAIAADLGERCEMHKDVFMGEFPDEELLVEAYKIANARITKGEIELPSMMSRRDFTDLIKEVVEQAPVFCPECERLFGKDD
SIO_010081: HAP48_RS49165
subclass of: SO_0000673
so part of: HAP48_RS49165
location: complement(6356..6661)
location: region:6356-6661:-1
so has part: feature:6356-6661:-1:exon

WP_224497343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6356-6661:-1:exon

HAP48_RS49170
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49170
old locus tag: HAP48_0049170
pseudo: true
so part of: sequence
location: complement(<6834..7058)
location: region:6834-7058:-1
so has part: feature:6834-7058:-1:exon
subclass of: SO_0000010

position:6834:-1
position: 6834
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:7058:-1
position: 7058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6834-7058:-1:exon

HAP48_RS49170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49170
old locus tag: HAP48_0049170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011510130.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: HAP48_RS49170
subclass of: SO_0000673
so part of: HAP48_RS49170
location: complement(<6834..7058)
location: region:6834-7058:-1
so has part: feature:6834-7058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6834-7058:-1:exon

HAP48_RS49175
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49175
old locus tag: HAP48_0049175
so part of: sequence
location: 7361..7603
location: region:7361-7603:1
so has part: feature:7361-7603:1:exon
subclass of: SO_0000010

position:7361:1
position: 7361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7603:1
position: 7603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7361-7603:1:exon

HAP48_RS49175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49175
old locus tag: HAP48_0049175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015668183.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6471 domain-containing protein
translation: MVLPKAEEEWGQRASAFLKAEMKKADVTYAELVKRLKKHGLKDETEAGITMKLKRGSFTAIFFLACVAALELEQVVLEEI
SIO_010081: HAP48_RS49175
subclass of: SO_0000673
so part of: HAP48_RS49175
location: 7361..7603
location: region:7361-7603:1
so has part: feature:7361-7603:1:exon

WP_224497342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7361-7603:1:exon

HAP48_RS49180
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49180
old locus tag: HAP48_0049180
so part of: sequence
location: 8434..8784
location: region:8434-8784:1
so has part: feature:8434-8784:1:exon
subclass of: SO_0000010

position:8434:1
position: 8434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8784:1
position: 8784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8434-8784:1:exon

HAP48_RS49180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49180
old locus tag: HAP48_0049180
inference: COORDINATES: protein motif:HMM:NF013677.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MGLDSKKDVHLAGSPLGPVSRLEVLEGPSGRRVRSEAERARIVAESLLPGAQVSEVSEVARKHGATRWQIYDWRPRFRQRGMLAPCEVSQSTFAPLVVESSTTNARHENISGRAPS
SIO_010081: HAP48_RS49180
subclass of: SO_0000673
so part of: HAP48_RS49180
location: 8434..8784
location: region:8434-8784:1
so has part: feature:8434-8784:1:exon

WP_224497351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8434-8784:1:exon

HAP48_RS49185
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49185
old locus tag: HAP48_0049185
so part of: sequence
location: complement(8792..9130)
location: region:8792-9130:-1
so has part: feature:8792-9130:-1:exon
subclass of: SO_0000010

position:8792:-1
position: 8792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9130:-1
position: 9130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8792-9130:-1:exon

HAP48_RS49185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49185
old locus tag: HAP48_0049185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKRNDALSHLVARPAPQPVPADNIVPLNAEPEQAQAAEAPSIEQPKVRAEAPKKPARKTVANSAARAMLYLPPKAKRKFKEIAFHEERKEHDVYVEALREYLEKRGHKGLL
SIO_010081: HAP48_RS49185
subclass of: SO_0000673
so part of: HAP48_RS49185
location: complement(8792..9130)
location: region:8792-9130:-1
so has part: feature:8792-9130:-1:exon

WP_224497350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8792-9130:-1:exon

HAP48_RS49190
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49190
old locus tag: HAP48_0049190
so part of: sequence
location: complement(9105..9773)
location: region:9105-9773:-1
so has part: feature:9105-9773:-1:exon
subclass of: SO_0000010

position:9105:-1
position: 9105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9773:-1
position: 9773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9105-9773:-1:exon

HAP48_RS49190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49190
old locus tag: HAP48_0049190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012029918.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNVISFVNQKGGTGKSMLAINLAVAAQESGENVCLIDLDPQGTIVNWYDTRTAETPNVVNHEQMPNLTEALERLGQGGFTLVIIDTKGEDSHATRGAMLAADLCLIPIRPAGPDLHASRPTMEALRSMKRDFALIINQATPNKAAKITAAIMASLAHDGPVVPQAVAARMDHQYAYALGQGASEYEPGGKAAEEIKELWAWCRKRLGKQQGDATSEQAKRRA
SIO_010081: HAP48_RS49190
subclass of: SO_0000673
so part of: HAP48_RS49190
location: complement(9105..9773)
location: region:9105-9773:-1
so has part: feature:9105-9773:-1:exon

WP_224497349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9105-9773:-1:exon

HAP48_RS49195
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49195
old locus tag: HAP48_0049195
so part of: sequence
location: 9990..11084
location: region:9990-11084:1
so has part: feature:9990-11084:1:exon
subclass of: SO_0000010

position:9990:1
position: 9990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11084:1
position: 11084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9990-11084:1:exon

HAP48_RS49195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49195
old locus tag: HAP48_0049195
inference: COORDINATES: protein motif:HMM:NF016670.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MADSEPTNALTLVAVDGIRDADLLASVEKARGSIAYESSLRVYQSIQRERDAKAAHEGEKQTRLASMPREQRRRYGIREVFENSTPTAADVRHLHSVIAICGMPYERQPVDVREFERVQGNMALDLSAGYLRNAEGKKIVQPLPFGPKARLVMMHLCSEGIRQKSPTIDIAESLTGFVRDMGFSDSGGKKGPLTAFKEQINALAACTMKVSVWDGVRARTKSVTPFDEVDVWLAPHPDQRSLWPSTVTFNDTFFESLQRHALPVNSQAVRAFAGSARKLDLYFWLGYKLYNITKPLNISWNALGEQFGQGFGRQRDFRSRMALELAHIKEVFPKLPVKLDENGIRLEPAGPDVLALPAVRSRKK
SIO_010081: HAP48_RS49195
subclass of: SO_0000673
so part of: HAP48_RS49195
location: 9990..11084
location: region:9990-11084:1
so has part: feature:9990-11084:1:exon

WP_224497348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9990-11084:1:exon

HAP48_RS50360
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS50360
so part of: sequence
location: complement(11336..11773)
location: region:11336-11773:-1
so has part: feature:11336-11773:-1:exon
subclass of: SO_0000010

position:11336:-1
position: 11336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11773:-1
position: 11773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11336-11773:-1:exon

HAP48_RS50360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS50360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008129375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MTAVNLVRIDADKKMARFYKLDVQPTLFGEWAVIREWGRIGRGGTVRSTPYGTASDRQWRKKITRHEPSHVRLWQARHPPRYAAYLIPSSPTFPHSSCFPSQLLLAAIGSARSVLNNSTGRGSGVSIPSLQIHFSKTSVQRFGRF
SIO_010081: HAP48_RS50360
subclass of: SO_0000673
so part of: HAP48_RS50360
location: complement(11336..11773)
location: region:11336-11773:-1
so has part: feature:11336-11773:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11336-11773:-1:exon

HAP48_RS49205
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49205
old locus tag: HAP48_0049205
so part of: sequence
location: complement(11770..12339)
location: region:11770-12339:-1
so has part: feature:11770-12339:-1:exon
subclass of: SO_0000010

position:11770:-1
position: 11770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12339:-1
position: 12339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11770-12339:-1:exon

HAP48_RS49205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49205
old locus tag: HAP48_0049205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596187.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSKSSAQNRLIGYARVSTTGQTLDAQLAQLKAAGCAVIFKDTASGARVDRKELQRMLGKLEPGDVVTVTRIDRLARSLFDLFAIVQRINQGGAVFRSIAEPWADTGTSTGRMMLAVMAGMADVERDLIRTRTAEGRARATARGQHMGRPPKLTPEQKREALARREAGEPPAEIARSYNVNRMTITRLTA
SIO_010081: HAP48_RS49205
subclass of: SO_0000673
so part of: HAP48_RS49205
location: complement(11770..12339)
location: region:11770-12339:-1
so has part: feature:11770-12339:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11770-12339:-1:exon

HAP48_RS49210
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49210
old locus tag: HAP48_0049210
pseudo: true
so part of: sequence
location: complement(<13900..>14247)
location: region:13900-14247:-1
so has part: feature:13900-14247:-1:exon
subclass of: SO_0000010

position:13900:-1
position: 13900
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:14247:-1
position: 14247
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13900-14247:-1:exon

HAP48_RS49210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49210
old locus tag: HAP48_0049210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011084518.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21 family transposase
SIO_010081: HAP48_RS49210
subclass of: SO_0000673
so part of: HAP48_RS49210
location: complement(<13900..>14247)
location: region:13900-14247:-1
so has part: feature:13900-14247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13900-14247:-1:exon

HAP48_RS49215
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49215
old locus tag: HAP48_0049215
so part of: sequence
location: complement(14641..15039)
location: region:14641-15039:-1
so has part: feature:14641-15039:-1:exon
subclass of: SO_0000010

position:14641:-1
position: 14641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15039:-1
position: 15039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14641-15039:-1:exon

HAP48_RS49215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49215
old locus tag: HAP48_0049215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAENKKLPFMSIDENGMRAGKLGEEYAKWVLDILRNFVVVAFLFFIAEMSGKWYMWGLAIVGAIALYQFVFAYVNQAQFNLGPAREGGPTGVDILLRIFLILVASAITAALTLSSIAAFLAVIKEIAAVQAK
SIO_010081: HAP48_RS49215
subclass of: SO_0000673
so part of: HAP48_RS49215
location: complement(14641..15039)
location: region:14641-15039:-1
so has part: feature:14641-15039:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14641-15039:-1:exon

HAP48_RS49220
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49220
old locus tag: HAP48_0049220
so part of: sequence
location: complement(15493..16452)
location: region:15493-16452:-1
so has part: feature:15493-16452:-1:exon
subclass of: SO_0000010

position:15493:-1
position: 15493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16452:-1
position: 16452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15493-16452:-1:exon

HAP48_RS49220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49220
old locus tag: HAP48_0049220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKPAPKAPAMTTALSADALMGKSQTYIGRALAAKAARSMGEYQLWASLALELVGKAALAKIHPCLVADPNSSASLFAAAGRSVDTDIKTIIAKTVFDRLAHVSKRFDESTKKFCTNMSEKQNAELHSGEAPFEGVIASSWEGRYWHTAEIILEASDSSIEAWLGADKAKAPKELLAEYTHATEQAAKVRVQTAADAFGARPRKEREEADAKADAIGLWNVRNSFRQHADDIWEAECPACKSRSFLAGVKYDEEVSEDDNEDDPYEELVDVSYVAEEFLCPYCNLHLESRDSIEAVGLNVDRIKTETRQREYEPDYGND
SIO_010081: HAP48_RS49220
subclass of: SO_0000673
so part of: HAP48_RS49220
location: complement(15493..16452)
location: region:15493-16452:-1
so has part: feature:15493-16452:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15493-16452:-1:exon

HAP48_RS49225
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49225
old locus tag: HAP48_0049225
so part of: sequence
location: complement(16449..17132)
location: region:16449-17132:-1
so has part: feature:16449-17132:-1:exon
subclass of: SO_0000010

position:16449:-1
position: 16449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17132:-1
position: 17132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16449-17132:-1:exon

HAP48_RS49225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49225
old locus tag: HAP48_0049225
inference: COORDINATES: protein motif:HMM:NF014698.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TauD/TfdA family dioxygenase
translation: MQANPTPIDQLNLAGRVLQDGWFKSTVTEVGHDMHSAPETIAMLLGKPITGRAGQKIEPLMPTEPARANAKSLSVVHGLGSFPMHTDGAHRLQPPRFVVLVCASPGRSPVPTTLMRFRDLQIGTSERAQLETAPFLVRNGRRSFYSTICSRSRPFIRFDAGCMVPQSSESETSVKLIAHRANEVGFTPVHWRTGDVLVIDNWNVLHGRGLGVSEASSDRKLLRVSVQ
SIO_010081: HAP48_RS49225
subclass of: SO_0000673
so part of: HAP48_RS49225
location: complement(16449..17132)
location: region:16449-17132:-1
so has part: feature:16449-17132:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16449-17132:-1:exon

HAP48_RS49230
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49230
old locus tag: HAP48_0049230
so part of: sequence
location: complement(17440..17745)
location: region:17440-17745:-1
so has part: feature:17440-17745:-1:exon
subclass of: SO_0000010

position:17440:-1
position: 17440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17745:-1
position: 17745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17440-17745:-1:exon

HAP48_RS49230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49230
old locus tag: HAP48_0049230
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGAAKEMMLQREGMTGVAEEVAIAADLGERCEMHKDVFMGEFPDEELLVEAYKIANARITKGEIELPSMMSRRDFTDLIKEVVEQAPVFCPECERLFGKDD
SIO_010081: HAP48_RS49230
subclass of: SO_0000673
so part of: HAP48_RS49230
location: complement(17440..17745)
location: region:17440-17745:-1
so has part: feature:17440-17745:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17440-17745:-1:exon

HAP48_RS49235
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49235
old locus tag: HAP48_0049235
pseudo: true
so part of: sequence
location: complement(<17918..18142)
location: region:17918-18142:-1
so has part: feature:17918-18142:-1:exon
subclass of: SO_0000010

position:17918:-1
position: 17918
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:18142:-1
position: 18142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17918-18142:-1:exon

HAP48_RS49235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49235
old locus tag: HAP48_0049235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011510130.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: HAP48_RS49235
subclass of: SO_0000673
so part of: HAP48_RS49235
location: complement(<17918..18142)
location: region:17918-18142:-1
so has part: feature:17918-18142:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17918-18142:-1:exon

HAP48_RS49240
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49240
old locus tag: HAP48_0049240
so part of: sequence
location: 18445..18687
location: region:18445-18687:1
so has part: feature:18445-18687:1:exon
subclass of: SO_0000010

position:18445:1
position: 18445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18687:1
position: 18687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18445-18687:1:exon

HAP48_RS49240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49240
old locus tag: HAP48_0049240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015668183.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6471 domain-containing protein
translation: MVLPKAEEEWGQRASAFLKAEMKKADVTYAELVKRLKKHGLKDETEAGITMKLKRGSFTAIFFLACVAALELEQVVLEEI
SIO_010081: HAP48_RS49240
subclass of: SO_0000673
so part of: HAP48_RS49240
location: 18445..18687
location: region:18445-18687:1
so has part: feature:18445-18687:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18445-18687:1:exon

HAP48_RS49245
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49245
old locus tag: HAP48_0049245
so part of: sequence
location: 19518..19868
location: region:19518-19868:1
so has part: feature:19518-19868:1:exon
subclass of: SO_0000010

position:19518:1
position: 19518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19868:1
position: 19868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19518-19868:1:exon

HAP48_RS49245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49245
old locus tag: HAP48_0049245
inference: COORDINATES: protein motif:HMM:NF013677.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MGLDSKKDVHLAGSPLGPVSRLEVLEGPSGRRVRSEAERARIVAESLLPGAQVSEVSEVARKHGATRWQIYDWRPRFRQRGMLAPCEVSQSTFAPLVVESSTTNARHENISGRAPS
SIO_010081: HAP48_RS49245
subclass of: SO_0000673
so part of: HAP48_RS49245
location: 19518..19868
location: region:19518-19868:1
so has part: feature:19518-19868:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19518-19868:1:exon

HAP48_RS49250
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49250
old locus tag: HAP48_0049250
so part of: sequence
location: complement(19876..20214)
location: region:19876-20214:-1
so has part: feature:19876-20214:-1:exon
subclass of: SO_0000010

position:19876:-1
position: 19876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20214:-1
position: 20214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19876-20214:-1:exon

HAP48_RS49250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49250
old locus tag: HAP48_0049250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKRNDALSHLVARPAPQPVPADNIVPLNAEPEQAQAAEAPSIEQPKVRAEAPKKPARKTVANSAARAMLYLPPKAKRKFKEIAFHEERKEHDVYVEALREYLEKRGHKGLL
SIO_010081: HAP48_RS49250
subclass of: SO_0000673
so part of: HAP48_RS49250
location: complement(19876..20214)
location: region:19876-20214:-1
so has part: feature:19876-20214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19876-20214:-1:exon

HAP48_RS49255
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49255
old locus tag: HAP48_0049255
so part of: sequence
location: complement(20189..20857)
location: region:20189-20857:-1
so has part: feature:20189-20857:-1:exon
subclass of: SO_0000010

position:20189:-1
position: 20189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20857:-1
position: 20857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20189-20857:-1:exon

HAP48_RS49255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49255
old locus tag: HAP48_0049255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012029918.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNVISFVNQKGGTGKSMLAINLAVAAQESGENVCLIDLDPQGTIVNWYDTRTAETPNVVNHEQMPNLTEALERLGQGGFTLVIIDTKGEDSHATRGAMLAADLCLIPIRPAGPDLHASRPTMEALRSMKRDFALIINQATPNKAAKITAAIMASLAHDGPVVPQAVAARMDHQYAYALGQGASEYEPGGKAAEEIKELWAWCRKRLGKQQGDATSEQAKRRA
SIO_010081: HAP48_RS49255
subclass of: SO_0000673
so part of: HAP48_RS49255
location: complement(20189..20857)
location: region:20189-20857:-1
so has part: feature:20189-20857:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20189-20857:-1:exon

HAP48_RS49260
type: Gene
subclass of: SO_0000704
RO_0002162: 1404411
locus tag: HAP48_RS49260
old locus tag: HAP48_0049260
so part of: sequence
location: 21074..22168
location: region:21074-22168:1
so has part: feature:21074-22168:1:exon
subclass of: SO_0000010

position:21074:1
position: 21074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21074-22168:1:exon

HAP48_RS49260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1404411
locus tag: HAP48_RS49260
old locus tag: HAP48_0049260
inference: COORDINATES: protein motif:HMM:NF016670.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MADSEPTNALTLVAVDGIRDADLLASVEKARGSIAYESSLRVYQSIQRERDAKAAHEGEKQTRLASMPREQRRRYGIREVFENSTPTAADVRHLHSVIAICGMPYERQPVDVREFERVQGNMALDLSAGYLRNAEGKKIVQPLPFGPKARLVMMHLCSEGIRQKSPTIDIAESLTGFVRDMGFSDSGGKKGPLTAFKEQINALAACTMKVSVWDGVRARTKSVTPFDEVDVWLAPHPDQRSLWPSTVTFNDTFFESLQRHALPVNSQAVRAFAGSARKLDLYFWLGYKLYNITKPLNISWNALGEQFGQGFGRQRDFRSRMALELAHIKEVFPKLPVKLDENGIRLEPAGPDVLALPAVRSRKK
SIO_010081: HAP48_RS49260
subclass of: SO_0000673
so part of: HAP48_RS49260
location: 21074..22168
location: region:21074-22168:1
so has part: feature:21074-22168:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21074-22168:1:exon