Corynebacterium glyciniphilum AJ 3170 plasmid pCgly1, complete sequence.
Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.
Revisiting Corynebacterium glyciniphilum (ex Kubota et al., 1972) sp. nov., nom. rev., isolated from putrefied banana
Int J Syst Evol Microbiol 65 (Pt 1), 177-182 (2015)
Submitted (25-OCT-2013) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006843.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nCoverage :: 91.01\nSequencing Technology :: 454; Illumina\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/10/2022 05:51:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,343\nCDSs (total) :: 3,277\nGenes (coding) :: 3,243\nCDSs (with protein) :: 3,243\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 16 of 34\nPseudo Genes (incomplete) :: 22 of 34\nPseudo Genes (internal stop) :: 6 of 34\nPseudo Genes (multiple problems) :: 8 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium glyciniphilum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013206.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010122580.1
poly-gamma-glutamate biosynthesis protein PgsC/CapC
COORDINATES: similar to AA sequence:RefSeq:WP_010122579.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
GO:0070501 - poly-gamma-glutamate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019013.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014010953.1
COORDINATES: similar to AA sequence:RefSeq:WP_020442070.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011018353.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018530490.1
COORDINATES: protein motif:HMM:NF023805.2
COORDINATES: similar to AA sequence:RefSeq:WP_019853682.1
integration host factor, actinobacterial type
COORDINATES: protein motif:HMM:NF006155.0
COORDINATES: similar to AA sequence:RefSeq:WP_014010611.1
ABC transporter family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010191231.1
COORDINATES: similar to AA sequence:RefSeq:WP_006943903.1
COORDINATES: similar to AA sequence:RefSeq:WP_014522347.1
COORDINATES: similar to AA sequence:RefSeq:WP_020441814.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:NF014299.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009394576.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_006945799.1
COORDINATES: similar to AA sequence:RefSeq:WP_014009514.1
COORDINATES: similar to AA sequence:RefSeq:WP_014009513.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_010310994.1
COORDINATES: similar to AA sequence:RefSeq:WP_005521239.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_017885399.1
COORDINATES: protein motif:HMM:NF020332.2
conjugative relaxase TrwC/TraI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009974963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011435341.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF025840.2
COORDINATES: similar to AA sequence:RefSeq:WP_013822665.1
COORDINATES: similar to AA sequence:RefSeq:WP_018135025.1