Mycoplasma parvum str. Indiana, complete sequence.
Bacteria; Mycoplasmatota; Mollicutes; Mycoplasmataceae; Mycoplasma.
Genome Sequence of Mycoplasma parvum (Formerly Eperythrozoon parvum), a Diminutive Hemoplasma of the Pig
Submitted (24-SEP-2013) Comparative Pathobiology, Purdue University, 725 Harrison Street, West Lafayette, IN 47907, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006771.1.\nBacteria from: Joanne Belle Messick, 725 Harrison Street, West\nLafayette, IN, USA 47907.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 1.2.7\nGenome Coverage :: 1000.0X\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/18/2022 12:37:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 584\nCDSs (total) :: 548\nGenes (coding) :: 545\nCDSs (with protein) :: 545\nGenes (RNA) :: 36\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 1\nPseudo Genes (total) :: 3\nCDSs (without protein) :: 3\nPseudo Genes (ambiguous residues) :: 0 of 3\nPseudo Genes (frameshifted) :: 1 of 3\nPseudo Genes (incomplete) :: 2 of 3\nPseudo Genes (internal stop) :: 0 of 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013608709.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013608710.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609540.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609541.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609542.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013608714.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608715.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014858102.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608717.1
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_015511391.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511392.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609547.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858107.1
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014849534.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511396.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608724.1
GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]
signal recognition particle receptor subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013608725.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849539.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849540.1
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013609554.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608730.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511404.1
COORDINATES: protein motif:HMM:NF012731.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015922.2
DNA gyrase C-terminal beta-propeller domain-containing protein
COORDINATES: protein motif:HMM:NF016443.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
DpnII family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF025217.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014850131.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610174.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610173.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013804.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609464.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013609463.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013610170.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609461.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609460.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609459.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609458.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610168.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511886.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609455.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609454.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609453.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610086.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609369.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610087.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850045.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609373.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609374.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609375.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013610092.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_013609377.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609418.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610131.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610132.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610133.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858887.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858888.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511870.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858891.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609428.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609429.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609430.1
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_013609431.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_013610137.1
COORDINATES: protein motif:HMM:NF014759.2
COORDINATES: protein motif:HMM:NF013527.2
5'-3' exonuclease H3TH domain-containing protein
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF023583.2
type I restriction-modification system subunit M N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: protein motif:HMM:TIGR00348.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013610144.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609436.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609561.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610149.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609437.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013609755.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609446.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_013610136.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609200.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609181.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609173.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511682.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609560.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511681.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511680.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609154.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609915.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609150.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609149.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609148.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609911.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609146.1
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609145.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609909.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609143.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849611.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609141.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609140.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849608.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609138.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609137.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609136.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609902.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609132.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609897.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609896.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609895.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609127.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609126.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: similar to AA sequence:RefSeq:WP_015511643.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849589.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609890.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609120.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013609117.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609116.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609115.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858568.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609113.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609885.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849922.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271973.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_013609882.1
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013705.2
DnaJ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011228713.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013609107.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007526570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011205923.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609878.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609877.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609876.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013609100.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609099.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609098.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609871.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609870.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609094.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609869.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609868.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609091.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609866.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609089.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609088.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609865.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609086.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609864.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013609863.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609083.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005398614.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609079.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858616.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609856.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609855.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609073.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609072.1
COORDINATES: protein motif:HMM:NF013057.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609853.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609852.1
COORDINATES: similar to AA sequence:RefSeq:WP_003948630.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511590.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609066.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023950.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849849.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511586.1
COORDINATES: similar to AA sequence:RefSeq:WP_006688879.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858666.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609060.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609058.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609057.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609846.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609055.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609054.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609053.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858426.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609051.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00011
COORDINATES: similar to AA sequence:RefSeq:WP_014849826.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012598.2
COORDINATES: similar to AA sequence:RefSeq:WP_015511571.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609047.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609046.1
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: similar to AA sequence:RefSeq:WP_014858301.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_013609841.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511566.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF016689.2
GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (adenine(22)-N(1))-methyltransferase TrmK
COORDINATES: similar to AA sequence:RefSeq:WP_013609041.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609040.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858291.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609035.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_015511557.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608951.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608952.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608953.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608954.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]; GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608955.1
GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608956.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608957.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511550.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013608959.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_013608960.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014849649.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609778.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608972.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610006.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858758.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610073.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_013610074.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858781.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849749.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610077.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609355.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610080.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013860.2
COORDINATES: similar to AA sequence:RefSeq:WP_013610081.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609820.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609021.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609816.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013609019.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609815.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609814.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609016.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609812.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609811.1
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_013610154.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609013.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609012.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609011.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609010.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858217.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609008.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511526.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609006.1
GO:0006364 - rRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609803.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609004.1
NusA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013609002.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_013609801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511534.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013609798.1
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010925284.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858230.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609795.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608993.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858233.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609793.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608990.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609027.1
COORDINATES: protein motif:HMM:TIGR00168.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609029.1
DNA-directed RNA polymerase subunit delta
COORDINATES: similar to AA sequence:RefSeq:WP_015511502.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849768.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015727060.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013608950.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608949.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608948.1
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608947.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608946.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_013608944.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608943.1
COORDINATES: similar to AA sequence:RefSeq:WP_000944957.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608941.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608940.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283803.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608938.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014850039.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609764.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858151.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609762.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858149.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609603.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858147.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608777.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608776.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849806.1
COORDINATES: protein motif:HMM:NF014792.2
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
methionine adenosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015511431.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_013608772.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608771.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608770.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858137.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608768.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608767.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608765.1
COORDINATES: similar to AA sequence:RefSeq:WP_014273059.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_013608763.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609590.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608759.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609589.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608757.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850133.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610178.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511902.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
cysteine peptidase family C39 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013609474.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610182.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609477.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610183.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609480.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610185.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609483.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610187.1
COORDINATES: protein motif:HMM:NF024674.2
GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610189.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609487.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609488.1
COORDINATES: protein motif:HMM:TIGR02397.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610193.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609492.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609493.1
COORDINATES: similar to AA sequence:RefSeq:WP_014859005.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609495.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609496.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609497.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610197.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_013610198.1
GO:0032977 - membrane insertase activity [Evidence IEA]
YidC/Oxa1 family membrane protein insertase
COORDINATES: similar to AA sequence:RefSeq:WP_013608707.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014584309.1