Pseudosulfitobacter pseudonitzschiae strain H46 plasmid unnamed2, complete sequence.
type: Entry
definition: Pseudosulfitobacter pseudonitzschiae strain H46 plasmid unnamed2, complete sequence.
sequence version: NZ_CP054601.1
sequence date: 2023-06-02
sequence: sequence
division: CON
label: NZ_CP054601.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15150473
keyword: RefSeq
source: Pseudosulfitobacter pseudonitzschiae
organism: Pseudosulfitobacter pseudonitzschiae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Pseudosulfitobacter.
reference: 1
references: 20019144
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP054601.1.\nBacteria and source DNA available from China Qingdao Laoshan\nDistrict The first Institute of Oceanography Zheng Li.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC NGS Cell v. February-2020\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 103.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/01/2023 23:18:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,846\nCDSs (total) :: 4,793\nGenes (coding) :: 4,747\nCDSs (with protein) :: 4,747\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 19 of 46\nPseudo Genes (incomplete) :: 23 of 46\nPseudo Genes (internal stop) :: 9 of 46\nPseudo Genes (multiple problems) :: 4 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11792
topology: circular
so has quality: SO_0000988
location: 1..11792
location: region:1-11792:1
RO_0002162: 1402135

NZ_CP054601
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15150473
type: BioSample
SIO_000068: biosample

1
title: De novo assembly of human genomes with massively parallel short read sequencing
author: Li, R.
author: Zhu, H.
author: Ruan, J.
author: Qian, W.
author: Fang, X.
author: Shi, Z.
author: Li, Y.
author: Li, S.
author: Shan, G.
author: Kristiansen, K.
author: Yang, H.
author: Wang, J.
journal: Genome Res
volume: 20
issue: 2
pages: 265-272
year: 2010
pubmed: 20019144

20019144
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hu, T.
journal: Submitted (05-JUN-2020) Ministry of natural resources, The first Institute of Oceanography, ZhongHan Street, QingDao 266100, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11792:1
position: 11792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11792:1:source
so part of: sequence
organism: Pseudosulfitobacter pseudonitzschiae
mol type: genomic DNA
strain: H46
isolation source: shallow sea, symbosis with harmful algal bloom algae
plasmid: unnamed2
country: China: The East China Sea
collection date: 2017-10

1402135
type: Taxonomy
SIO_000068: taxonomy

HT745_RS24370
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS24370
pseudo: true
so part of: sequence
location: complement(<2..190)
location: region:2-190:-1
so has part: feature:2-190:-1:exon
subclass of: SO_0000010

71773307
type: Gene
SIO_000068: ncbigene

position:2:-1
position: 2
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:190:-1
position: 190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-190:-1:exon

HT745_RS24370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS24370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005860006.1
GO function: GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: peptide-methionine (R)-S-oxide reductase
SIO_010081: HT745_RS24370
subclass of: SO_0000673
so part of: HT745_RS24370
location: complement(<2..190)
location: region:2-190:-1
so has part: feature:2-190:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2-190:-1:exon

HT745_RS19610
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
gene: queG
locus tag: HT745_RS19610
old locus tag: HT745_19615
so part of: sequence
location: complement(423..1481)
location: region:423-1481:-1
so has part: feature:423-1481:-1:exon
subclass of: SO_0000010

68871952
type: Gene
SIO_000068: ncbigene

position:423:-1
position: 423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1481:-1
position: 1481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423-1481:-1:exon

HT745_RS19610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
gene: queG
locus tag: HT745_RS19610
old locus tag: HT745_19615
EC number: 1.17.99.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008554106.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
GO process: GO:0008616 - queuosine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA epoxyqueuosine(34) reductase QueG
translation: MTPLRDRLKAEAAAVGFAACRICRPGDVPEVMARLRAFLDAGYHGQMAWLAERVQWRGAPDVLWPEARSVIMLAENYGPGTDPLEVLERRDRAAVSVYAQGRDYHDVVKKRLKRLGRWLIAEAGPETEIKVFVDTAPVPEKALGQAAGLGWQGKHTNLVSRDLGSWFFLGAIFTTLELPVDGAETDHCGGCRRCLDICPTGAFPAPYRLDARRCISYLTIEHHGPVPEDLRALMGNRIYGCDDCLAVCPWNKFARRAEEQKYHARDDLRAPALAELAVLDDAAFRARFSGSPIKRIGRDRFVRNVLYAIGNSGRPDLRGVAQNLTDDPDATVRDAAGWAVHRLSNATREGSE
SIO_010081: HT745_RS19610
subclass of: SO_0000673
so part of: HT745_RS19610
location: complement(423..1481)
location: region:423-1481:-1
so has part: feature:423-1481:-1:exon

WP_023849818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:423-1481:-1:exon

HT745_RS19615
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19615
old locus tag: HT745_19620
so part of: sequence
location: complement(1853..2740)
location: region:1853-2740:-1
so has part: feature:1853-2740:-1:exon
subclass of: SO_0000010

68871953
type: Gene
SIO_000068: ncbigene

position:1853:-1
position: 1853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2740:-1
position: 2740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1853-2740:-1:exon

HT745_RS19615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19615
old locus tag: HT745_19620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020041027.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR substrate-binding domain-containing protein
translation: MIDLRKMEQFVAVAEECHFHRAAQRLGMSQPPLTVAIRRLEEDLGVDLIERGGNRMLGLTAAGQAFLHEARETLRQAGHAIATARETAAGRTGLIRLGYVGSALYGRLPDTIRTFRRARPNVRLELHEATTAAQIAGLRDGTLDAGIVIPPIAGAAGIELHDFDQDRLCIALSLGHHLAGKDDLCVADIADEDFVLWPMVEGRGFHLQVIRLCTDAGFVPRVTQEAHGMHAVLSLVAVGAGVSVVPESMRQFRPDQITYRPIAEAGADFPLCLALHKPGPATVAFKEIAFRGDSI
SIO_010081: HT745_RS19615
subclass of: SO_0000673
so part of: HT745_RS19615
location: complement(1853..2740)
location: region:1853-2740:-1
so has part: feature:1853-2740:-1:exon

WP_023849819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1853-2740:-1:exon

HT745_RS19620
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19620
old locus tag: HT745_19625
so part of: sequence
location: 2858..3727
location: region:2858-3727:1
so has part: feature:2858-3727:1:exon
subclass of: SO_0000010

68871954
type: Gene
SIO_000068: ncbigene

position:2858:1
position: 2858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3727:1
position: 3727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2858-3727:1:exon

HT745_RS19620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19620
old locus tag: HT745_19625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020041028.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family NAD(P)-dependent oxidoreductase
translation: MKEPDFEGQTVLITGAGRGLGLAYARAVGQLGATVLVHDVGADSDGRGQNRAVAENATALLRSEGIDAHPFGTPIDTRDACRELVRDCLRVRGRLDAVIHNAGWVAYERVEDLRESSFDHMTAIMAKAPLWLVQAAWPGMRQAGYGRIVLTTSCRAVYPQYVQKGLASYAAAKMAAVGIVNVLADEGLEHGIFVNAVSPVAKTRMWGVEGEPEDLKPEAVAPGVAFLASNACTEGGWVLRAANGQFHATRALEAEGVDYPRDLRAVTADSPSAVAAAWDRIACAVPEAR
SIO_010081: HT745_RS19620
subclass of: SO_0000673
so part of: HT745_RS19620
location: 2858..3727
location: region:2858-3727:1
so has part: feature:2858-3727:1:exon

WP_039615759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2858-3727:1:exon

HT745_RS19625
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19625
old locus tag: HT745_19630
so part of: sequence
location: 3724..4584
location: region:3724-4584:1
so has part: feature:3724-4584:1:exon
subclass of: SO_0000010

68871955
type: Gene
SIO_000068: ncbigene

position:3724:1
position: 3724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4584:1
position: 4584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3724-4584:1:exon

HT745_RS19625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19625
old locus tag: HT745_19630
EC number: 3.1.1.99
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020041029.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SMP-30/gluconolactonase/LRE family protein
translation: MMKDVVPDIAVAVRAKATIGESPIWSARRERLLWIDIMGRQLHTYDPATGRDEVTELPTDAGLLAESPSGEIVLGLDCGLARLGDDGEIEHIASAPHADPAFRFNDGRFDPQGRLWAGLMNKEGKKGSGVLYRFDPDGTWHIADTGFDLPNGLEWSRDGKTFYFTDSHKGKIYAYDFDPVSGKVENRRPFFGMNPADGKPDGLAMDPEGYFLSVLFDGSAILRIAPDGVLDLRIRLPVPRPTSCAFGGDGRTLFITTARIGLSDTQLDDAPLSGALLQLDYDDALR
SIO_010081: HT745_RS19625
subclass of: SO_0000673
so part of: HT745_RS19625
location: 3724..4584
location: region:3724-4584:1
so has part: feature:3724-4584:1:exon

WP_023849821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3724-4584:1:exon

HT745_RS24375
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS24375
pseudo: true
so part of: sequence
location: complement(<4580..>4714)
location: region:4580-4714:-1
so has part: feature:4580-4714:-1:exon
subclass of: SO_0000010

71773308
type: Gene
SIO_000068: ncbigene

position:4580:-1
position: 4580
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4714:-1
position: 4714
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4580-4714:-1:exon

HT745_RS24375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS24375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011082855.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS630 family transposase
SIO_010081: HT745_RS24375
subclass of: SO_0000673
so part of: HT745_RS24375
location: complement(<4580..>4714)
location: region:4580-4714:-1
so has part: feature:4580-4714:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4580-4714:-1:exon

HT745_RS19630
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19630
old locus tag: HT745_19635
so part of: sequence
location: complement(4912..5838)
location: region:4912-5838:-1
so has part: feature:4912-5838:-1:exon
subclass of: SO_0000010

68871956
type: Gene
SIO_000068: ncbigene

position:4912:-1
position: 4912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5838:-1
position: 5838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4912-5838:-1:exon

HT745_RS19630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19630
old locus tag: HT745_19635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019051715.1
GO function: GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MDTRQLRHFVAVAETLHFGRAAERLGMTQPPLSQSIRALEAGLGKALFARTRRSVALTPFGEAFLPHVRAALAGVEGLRVTAEALRGGAAGRLALSFVSTADYSVLPALVQGFRARYPGVELALTEMTSDMQIAALIEGKGHAGIVIPHGDDPLPQALSYRRLLAEPLVVAAPESWVAEGRLPEGPRLSPEAVIDKPLIVFPRRAAPLFHDLVTGFYTARGVRPQVAQHAIQMQTIISLVSAGMGLALVPRSLKNLARAGVVYRDLDGTAPVLETGIAWRRADETPTLRNFLALVEEGAVVAKGDASG
SIO_010081: HT745_RS19630
subclass of: SO_0000673
so part of: HT745_RS19630
location: complement(4912..5838)
location: region:4912-5838:-1
so has part: feature:4912-5838:-1:exon

WP_023849822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4912-5838:-1:exon

HT745_RS19635
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
gene: ilvD
locus tag: HT745_RS19635
old locus tag: HT745_19640
so part of: sequence
location: 5936..7786
location: region:5936-7786:1
so has part: feature:5936-7786:1:exon
subclass of: SO_0000010

68871957
type: Gene
SIO_000068: ncbigene

position:5936:1
position: 5936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7786:1
position: 7786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5936-7786:1:exon

HT745_RS19635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
gene: ilvD
locus tag: HT745_RS19635
old locus tag: HT745_19640
EC number: 4.2.1.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009177689.1
GO function: GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydroxy-acid dehydratase
translation: MPRYRSRTSTHGRNMAGARGLWRATGMGDDDFGKPIIAIVNSFTQFVPGHVHLQDLGQMVAREVEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAIFVSGGPMEAGKIDLADLDVKKVDLVDAMVAAASETYTDEQVQHIEENACPTCGSCSGMFTANSMNCLAEALGLALPGNGSTLATHADRKHLFLEAGRKIVEITRRHYELEETGLLPREIATFEAFENAMSLDIAMGGSTNTVLHLLAIALEGEVSFTMDDIDRLSRKVPCLCKVAPNIENVHMEDVHRAGGIFSILGELSRAGLLHEECATVHSTTMGEAIAHWDIKVANNPEAESLFKAAPGGVRTTKAFSTENRFKELDKDRENGVIRSKEHAFSQDGGLAVLFGNIAQEGCIVKTAGVDASILTFTGTAHVCESQDAAVSDILTGKVKEGDVVVIRYEGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHVSPEAAEGGAIGLVEKGDKIEIDIPNRTINLMVDDATLAARRAAQDEKGWKPAEVRKRKVTTALQAYAALTTSAAKGAVRDVSQLHKD
SIO_010081: HT745_RS19635
subclass of: SO_0000673
so part of: HT745_RS19635
location: 5936..7786
location: region:5936-7786:1
so has part: feature:5936-7786:1:exon

WP_031322334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5936-7786:1:exon

HT745_RS19640
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19640
old locus tag: HT745_19645
so part of: sequence
location: 8339..8962
location: region:8339-8962:1
so has part: feature:8339-8962:1:exon
subclass of: SO_0000010

68871958
type: Gene
SIO_000068: ncbigene

position:8339:1
position: 8339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8962:1
position: 8962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8339-8962:1:exon

HT745_RS19640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19640
old locus tag: HT745_19645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018304498.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DedA family protein
translation: MFDWITGIIDAIGSFGVGLLMFIENVFPPIPSELIMPLAGFNAATGAQNLWLVILFGSLGSIAGALLWYWIGAKIGMERLRRLADRHGRWLTITPDELDRANGWFQRHGGAAVFLGRLIPTVRTFISVPAGVAKMPMGRFLAYTTLGTLLWTALLAFAGYALQSQYDLVAQWLNPVSTAVVTCIVAVYLYRVATYKRRLRKEGARTG
SIO_010081: HT745_RS19640
subclass of: SO_0000673
so part of: HT745_RS19640
location: 8339..8962
location: region:8339-8962:1
so has part: feature:8339-8962:1:exon

WP_023849824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8339-8962:1:exon

HT745_RS19645
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19645
old locus tag: HT745_19650
so part of: sequence
location: complement(9055..9720)
location: region:9055-9720:-1
so has part: feature:9055-9720:-1:exon
subclass of: SO_0000010

68871959
type: Gene
SIO_000068: ncbigene

position:9055:-1
position: 9055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9720:-1
position: 9720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9055-9720:-1:exon

HT745_RS19645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19645
old locus tag: HT745_19650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005979698.1
GO function: GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006749 - glutathione metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutathione S-transferase family protein
translation: MAKLYHVPLSPFCRKVRLSLAEKKIECELVEERYWEQDPDFLRRNPAAKVPVLRMDGKTMAESAAICEWIEEKYPEPALMPRGADARYEVRRIVGWFDDKFHNEVTSKLLYERVNKKVMKAGFPDSGNVKSGAKAIKYHLDYLAWLLDHRRWLAGDSMTLADFAAAAHLSSLDYISDVDWNRSAVVKDWYAKIKSRPAFRSILADQVPGFPQPAHYSDLDF
SIO_010081: HT745_RS19645
subclass of: SO_0000673
so part of: HT745_RS19645
location: complement(9055..9720)
location: region:9055-9720:-1
so has part: feature:9055-9720:-1:exon

WP_023849825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9055-9720:-1:exon

HT745_RS19650
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
gene: mtgA
locus tag: HT745_RS19650
old locus tag: HT745_19655
so part of: sequence
location: complement(9812..10462)
location: region:9812-10462:-1
so has part: feature:9812-10462:-1:exon
subclass of: SO_0000010

68871960
type: Gene
SIO_000068: ncbigene

position:9812:-1
position: 9812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10462:-1
position: 10462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9812-10462:-1:exon

HT745_RS19650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
gene: mtgA
locus tag: HT745_RS19650
old locus tag: HT745_19655
EC number: 2.4.1.129
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005618376.1
GO component: GO:0016020 - membrane [Evidence IEA]; GO:0009274 - peptidoglycan-based cell wall [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: monofunctional biosynthetic peptidoglycan transglycosylase
translation: MRWTLRLGVIMGVLVIGAVVLFSVVNPPTTHTIWAERQRLGAVEHQWADLDAVAPVMVRAVVAAEDANFCRHWGFDMDAIRAAIASGADRGGSTISQQVVKNVYLWQDRSYIRKALEAILTPAVETLWSKRRIVEVYLNIAEFGEGVFGIDAAARHYFGVAPADLSAQQAALLAAVLPSPKKRSASNPSNAVSRRARAIRDGAATIRADGRAACFE
SIO_010081: HT745_RS19650
subclass of: SO_0000673
so part of: HT745_RS19650
location: complement(9812..10462)
location: region:9812-10462:-1
so has part: feature:9812-10462:-1:exon

WP_023849826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9812-10462:-1:exon

HT745_RS19655
type: Gene
subclass of: SO_0000704
RO_0002162: 1402135
locus tag: HT745_RS19655
old locus tag: HT745_19660
pseudo: true
so part of: sequence
location: complement(10916..>11791)
location: region:10916-11791:-1
so has part: feature:10916-11791:-1:exon
subclass of: SO_0000010

68871961
type: Gene
SIO_000068: ncbigene

position:10916:-1
position: 10916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11791:-1
position: 11791
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10916-11791:-1:exon

HT745_RS19655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1402135
locus tag: HT745_RS19655
old locus tag: HT745_19660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007811936.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: glutamate synthase large subunit
SIO_010081: HT745_RS19655
subclass of: SO_0000673
so part of: HT745_RS19655
location: complement(10916..>11791)
location: region:10916-11791:-1
so has part: feature:10916-11791:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10916-11791:-1:exon