Bacillus licheniformis strain SCDB 14 plasmid pSCDB14.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
Whole genome sequencing of the industrial strain Bacillus licheniformis SCDB14
Submitted (22-MAR-2016) Department of Biological Sciences, Chonbuk National University, Deokjin-Dong 1-Ka 664-14, Jeonju 561-756, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP014843.1.\nInformation about annotation pipeline can be found here:\nhttp://prodigal.ornl.gov/server.html\n\n ##Genome-Annotation-Data-START##\n Annotation Provider :: MIFI & CBNU\n Annotation Date :: MAR-2016\n Annotation Version :: 2.6.2\n Annotation Pipeline :: Prodigal\n Annotation Method :: Prokaryotic Dynamic Programming\nGenefinding Algorithm;Prodigal\n Features Annotated :: Gene; CDS; rRNA; tRNA; tmRNA\n Gene : 4,492\n CDS : 4,384\n rRNA : 24\n tRNA : 83\n tmRNA : 1\n ##Genome-Annotation-Data-END##.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nGenome Coverage :: 200x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:34:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,474\nCDSs (total) :: 4,362\nGenes (coding) :: 4,289\nCDSs (with protein) :: 4,289\nGenes (RNA) :: 112\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 5\nPseudo Genes (total) :: 73\nCDSs (without protein) :: 73\nPseudo Genes (ambiguous residues) :: 0 of 73\nPseudo Genes (frameshifted) :: 42 of 73\nPseudo Genes (incomplete) :: 28 of 73\nPseudo Genes (internal stop) :: 15 of 73\nPseudo Genes (multiple problems) :: 12 of 73\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000718622.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000856968.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF017034.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016084636.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084643.1
COORDINATES: similar to AA sequence:RefSeq:WP_014470141.1
COORDINATES: similar to AA sequence:RefSeq:WP_014472011.1
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014417895.1
COORDINATES: similar to AA sequence:RefSeq:WP_017474459.1
COORDINATES: similar to AA sequence:RefSeq:WP_000091719.1
COORDINATES: protein motif:HMM:NF021182.2
COORDINATES: similar to AA sequence:RefSeq:WP_009328304.1
COORDINATES: similar to AA sequence:RefSeq:WP_009328305.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084668.1
COORDINATES: protein motif:HMM:NF018437.2
COORDINATES: similar to AA sequence:RefSeq:WP_000552022.1
COORDINATES: protein motif:HMM:TIGR02012.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016084680.1
COORDINATES: protein motif:HMM:NF013577.2
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025815.2
COORDINATES: protein motif:HMM:NF024747.2
4Fe-4S cluster-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007930550.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016075234.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018565.2
COORDINATES: protein motif:HMM:NF022657.2
COORDINATES: protein motif:HMM:NF014560.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084706.1
COORDINATES: protein motif:HMM:NF013930.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_391416.1
COORDINATES: protein motif:HMM:NF014638.2
COORDINATES: protein motif:HMM:NF023069.2
DnaA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003241916.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009328750.1
COORDINATES: similar to AA sequence:RefSeq:WP_013400033.1
COORDINATES: similar to AA sequence:RefSeq:WP_003181328.1
COORDINATES: similar to AA sequence:RefSeq:WP_006637005.1
COORDINATES: similar to AA sequence:RefSeq:WP_006637006.1
COORDINATES: protein motif:HMM:NF024668.2
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012832.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084755.1
COORDINATES: similar to AA sequence:RefSeq:WP_016089868.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016084761.1
COORDINATES: similar to AA sequence:RefSeq:WP_001063509.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084765.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF017663.2
GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
RusA family crossover junction endodeoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_000477374.1
COORDINATES: similar to AA sequence:RefSeq:WP_016058163.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_003238353.1
COORDINATES: similar to AA sequence:RefSeq:WP_003328811.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:NP_389620.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_000972646.1
COORDINATES: similar to AA sequence:RefSeq:WP_000899460.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084790.1
COORDINATES: similar to AA sequence:RefSeq:WP_000446121.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084792.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016084795.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016084796.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084800.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084802.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084804.1
COORDINATES: similar to AA sequence:RefSeq:WP_001123435.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084806.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084807.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084808.1
low copy number virion structural protein
COORDINATES: similar to AA sequence:RefSeq:WP_012614845.1
COORDINATES: similar to AA sequence:RefSeq:WP_000090426.1
COORDINATES: protein motif:HMM:NF012632.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084815.1
COORDINATES: similar to AA sequence:RefSeq:WP_000402864.1
COORDINATES: similar to AA sequence:RefSeq:WP_000925104.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084824.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084825.1
COORDINATES: similar to AA sequence:RefSeq:WP_000510552.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084827.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084828.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084830.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084831.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084832.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084834.1
COORDINATES: similar to AA sequence:RefSeq:WP_000064433.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084836.1
COORDINATES: similar to AA sequence:RefSeq:WP_001014238.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084839.1
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084841.1
COORDINATES: similar to AA sequence:RefSeq:WP_000246817.1
COORDINATES: similar to AA sequence:RefSeq:WP_000189782.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084844.1
COORDINATES: protein motif:HMM:TIGR01554.2
COORDINATES: similar to AA sequence:RefSeq:WP_016084851.1
COORDINATES: protein motif:HMM:NF017673.2
phage terminase large subunit family protein