Borrelia hermsii strain ML2 plasmid lpB_ML2, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Evolution of variable major protein genes of the relapsing fever agent Borrelia hermsii
Submitted (30-OCT-2021) Microbiology & Molecular Genetics, University of California Irvine, 3501 Hewitt, Irvine, CA 92697, USA
REFSEQ INFORMATION: The reference sequence is identical to\nOL311417.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: CLC NGS Cell v. 21.04\nCoverage :: 1000x\nSequencing Technology :: Illumina; Oxford Nanopore\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 11:33:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,096\nCDSs (total) :: 1,058\nGenes (coding) :: 1,047\nCDSs (with protein) :: 1,047\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 8 of 11\nPseudo Genes (incomplete) :: 6 of 11\nPseudo Genes (internal stop) :: 6 of 11\nPseudo Genes (multiple problems) :: 7 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015633308.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633349.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015633348.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014696712.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633347.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
COORDINATES: protein motif:HMM:NF033721.0
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633304.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633303.1
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539547.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633346.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633345.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633344.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633343.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633342.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633340.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633312.1
COORDINATES: protein motif:HMM:NF016359.2
COORDINATES: similar to AA sequence:RefSeq:WP_015633339.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633326.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539806.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592996.1
COORDINATES: protein motif:HMM:NF040499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012858963.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012593116.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002658086.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024774.2
adenine deaminase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017525.2
CRASP family complement regulator-acquiring lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_010256195.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687066.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539674.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539675.1
COORDINATES: similar to AA sequence:RefSeq:WP_014654069.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011187143.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890591.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539565.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187120.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539680.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539568.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539569.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890586.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687058.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_015633357.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633329.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537731.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]