Borrelia hermsii strain ML2 plasmid lpA182, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Genome sequences of two isolates of Borrelia hermsii from humans with relapsing fever from the Sierra Nevada mountains of California
Submitted (05-OCT-2021) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Court, Irvine, CA 92697-4028, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP084624.1.\nBacteria and source DNA available from Alan Barbour, University of\nCalifornia Irvine, Irvine, CA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: CLC NGS Cell v. 21.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1000.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 11:33:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,096\nCDSs (total) :: 1,058\nGenes (coding) :: 1,047\nCDSs (with protein) :: 1,047\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 8 of 11\nPseudo Genes (incomplete) :: 6 of 11\nPseudo Genes (internal stop) :: 6 of 11\nPseudo Genes (multiple problems) :: 7 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014486248.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033729.0
COORDINATES: protein motif:HMM:NF033730.0
COORDINATES: protein motif:HMM:NF017525.2
CRASP family complement regulator-acquiring lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_014683095.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683094.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539395.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683152.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539280.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539408.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683157.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539290.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_001215827.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014683161.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: protein motif:HMM:TIGR02170.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539294.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539415.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683166.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683167.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683168.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683171.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683172.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539308.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683177.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539431.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256151.1
MupG family TIM beta-alpha barrel fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_011600701.1
COORDINATES: similar to AA sequence:RefSeq:WP_012622042.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_010890590.1
GO:0019191 - cellobiose transmembrane transporter activity [Evidence IEA]; GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028354.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
COORDINATES: protein motif:HMM:NF015275.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683197.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539443.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012539444.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703782.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_014486274.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683202.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539451.1
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014683204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683206.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539331.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683208.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539625.1