Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
Complete Genome Sequence of Leisingera sp. R2C4 Isolated from the Self-Regenerating Biocathode Consortium
Submitted (18-JUN-2019) NCBI, Naval Research Lab DC, 4555 Overlook Ave SW, Washington, DC 20375, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP041164.1.\nBacteria and source DNA available from Sarah Glaven, 4555 Overlook\nAve SW, Washington, DC, 20375, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 70.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:39:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,246\nCDSs (total) :: 4,174\nGenes (coding) :: 4,133\nCDSs (with protein) :: 4,133\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 23 of 41\nPseudo Genes (incomplete) :: 22 of 41\nPseudo Genes (internal stop) :: 4 of 41\nPseudo Genes (multiple problems) :: 8 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010443421.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019294468.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558402.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803648.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848978.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889370.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB
COORDINATES: similar to AA sequence:RefSeq:WP_008558441.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558419.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019294475.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019294476.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019294478.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558460.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558455.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558505.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558409.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294483.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294484.1
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807699.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209383.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294488.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294489.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008558432.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558495.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008226170.1
COORDINATES: similar to AA sequence:RefSeq:WP_019295397.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008558490.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294492.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816822.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_008558450.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019294495.1
GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558493.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558398.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558433.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558478.1
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008562455.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294513.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294512.1
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558394.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294510.1
COORDINATES: similar to AA sequence:RefSeq:WP_011540015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209358.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395294.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008558477.1
COORDINATES: similar to AA sequence:RefSeq:WP_005640636.1
GO:0004037 - allantoicase activity [Evidence IEA]; GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
bifunctional allantoicase/(S)-ureidoglycine aminohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_008558395.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdenum ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294501.1
GO:0015098 - molybdate ion transmembrane transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008558470.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294499.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807718.1
CheB methylesterase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558393.1
COORDINATES: similar to AA sequence:RefSeq:WP_008563477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209329.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297431.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297432.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558481.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558485.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558458.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558456.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209793.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558420.1
type VI secretion system-associated protein TagF
COORDINATES: similar to AA sequence:RefSeq:WP_008558430.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_008558468.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system protein TssL, long form
COORDINATES: similar to AA sequence:RefSeq:WP_008558421.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_009807589.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:WP_008558462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558504.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807592.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF017730.2
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010443394.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008209780.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558440.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558416.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558464.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_008558439.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_019294622.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_008558475.1
type VI secretion system accessory protein TagJ
COORDINATES: similar to AA sequence:RefSeq:WP_019294620.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_019294619.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558451.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558488.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558443.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558429.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: similar to AA sequence:RefSeq:WP_008558463.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.