Leisingera aquaemixtae strain R2C4 plasmid unnamed5.
type: Entry
definition: Leisingera aquaemixtae strain R2C4 plasmid unnamed5.
sequence version: NZ_CP041163.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP041163.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12141652
keyword: RefSeq
source: Leisingera aquaemixtae
organism: Leisingera aquaemixtae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP041163.1.\nBacteria and source DNA available from Sarah Glaven, 4555 Overlook\nAve SW, Washington, DC, 20375, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 70.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:39:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,246\nCDSs (total) :: 4,174\nGenes (coding) :: 4,133\nCDSs (with protein) :: 4,133\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 23 of 41\nPseudo Genes (incomplete) :: 22 of 41\nPseudo Genes (internal stop) :: 4 of 41\nPseudo Genes (multiple problems) :: 8 of 41\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 32785
topology: linear
so has quality: SO_0000987
location: 1..32785
location: region:1-32785:1
RO_0002162: 1396826

NZ_CP041163
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12141652
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leisingera sp. R2C4 Isolated from the Self-Regenerating Biocathode Consortium
author: Eddie, B.
author: Malanoski, A.
author: Bird, L.
author: Glaven, S.
journal: Unpublished

2
title: Direct Submission
author: Eddie, B.
author: Malanoski, A.
author: Bird, L.
author: Glaven, S.
journal: Submitted (18-JUN-2019) NCBI, Naval Research Lab DC, 4555 Overlook Ave SW, Washington, DC 20375, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32785:1
position: 32785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-32785:1:source
so part of: sequence
organism: Leisingera aquaemixtae
mol type: genomic DNA
strain: R2C4
isolation source: Biocathode MCL, marine biofilm
plasmid: unnamed5
country: USA: Rutgers, NJ
collection date: 2009

1396826
type: Taxonomy
SIO_000068: taxonomy

R2C4_RS20515
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20515
old locus tag: R2C4_20530
so part of: sequence
location: complement(<1..275)
location: region:1-275:-1
so has part: feature:1-275:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:275:-1
position: 275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-275:-1:exon

R2C4_RS20515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20515
old locus tag: R2C4_20530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017065560.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TRAP transporter small permease subunit
translation: MALGQFVQVVTRYLLQIPVMGLEETMLYPTIWLYILGAVNASREDTHIRANVLEIAIKTERGHTVLAIIGEIISLTVGLWLLSWAWEYTQYA
SIO_010081: R2C4_RS20515
subclass of: SO_0000673
so part of: R2C4_RS20515
location: complement(<1..275)
location: region:1-275:-1
so has part: feature:1-275:-1:exon

WP_244940838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-275:-1:exon

R2C4_RS20520
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20520
old locus tag: R2C4_20535
so part of: sequence
location: 432..1364
location: region:432-1364:1
so has part: feature:432-1364:1:exon
subclass of: SO_0000010

position:432:1
position: 432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1364:1
position: 1364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432-1364:1:exon

R2C4_RS20520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20520
old locus tag: R2C4_20535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558528.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR substrate-binding domain-containing protein
translation: MNFSIRQIFTFREVMRSGSISQAARTVGRTQPAVSTMISTLEGELGFSLFVREQGKLIPTPEARFFLEECEAVLERIERIERTVSKIRSHEAGKLRVACHPAAAGLFMPRILTDFLQGKDDLEVSLIMRSSDVIEDLIASQQFDIGFAETPEPRPSIKQTDFDLESVCIVPESDPLASAEQITPQDLDGAPMAVLFEKHPMTVRTEAAFQRSGCRFRKRLELRTWAPGLQFVAAGMCYMICDMITAYGCLQQRQTTAGLAIRRFTPRISSSVSILTPGYATPSLTSEAFTARLCAAIGHMQAEIEASLSL
SIO_010081: R2C4_RS20520
subclass of: SO_0000673
so part of: R2C4_RS20520
location: 432..1364
location: region:432-1364:1
so has part: feature:432-1364:1:exon

WP_141892178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:432-1364:1:exon

R2C4_RS20525
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20525
old locus tag: R2C4_20540
so part of: sequence
location: 1547..1795
location: region:1547-1795:1
so has part: feature:1547-1795:1:exon
subclass of: SO_0000010

position:1547:1
position: 1547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1795:1
position: 1795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1547-1795:1:exon

R2C4_RS20525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20525
old locus tag: R2C4_20540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558554.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPSYIFAAIAGILVLVFAVYMVDIDQTEETRLPDVDVKVEGGQLPEFEAEVGDIETGTKDVTVTVPTVDIQSPEEDAKEDG
SIO_010081: R2C4_RS20525
subclass of: SO_0000673
so part of: R2C4_RS20525
location: 1547..1795
location: region:1547-1795:1
so has part: feature:1547-1795:1:exon

WP_141892179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1547-1795:1:exon

R2C4_RS20530
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20530
old locus tag: R2C4_20545
so part of: sequence
location: 2033..2218
location: region:2033-2218:1
so has part: feature:2033-2218:1:exon
subclass of: SO_0000010

position:2033:1
position: 2033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2218:1
position: 2218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2033-2218:1:exon

R2C4_RS20530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20530
old locus tag: R2C4_20545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296341.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PLD nuclease N-terminal domain-containing protein
translation: MEYGLIGLLVLAADIYAIIQVLGSGASTAAKIVWVLVILILPVLGFIAWLVAGPRSSAAKI
SIO_010081: R2C4_RS20530
subclass of: SO_0000673
so part of: R2C4_RS20530
location: 2033..2218
location: region:2033-2218:1
so has part: feature:2033-2218:1:exon

WP_141892180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2033-2218:1:exon

R2C4_RS20535
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20535
old locus tag: R2C4_20550
so part of: sequence
location: complement(2303..3712)
location: region:2303-3712:-1
so has part: feature:2303-3712:-1:exon
subclass of: SO_0000010

position:2303:-1
position: 2303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3712:-1
position: 3712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2303-3712:-1:exon

R2C4_RS20535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20535
old locus tag: R2C4_20550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558558.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mechanosensitive ion channel
translation: MTCLTARAGRWPGARRALLAGLHLLILLAALCLGGTGAQAQTTADPVQTDGRIEVGDAAVRDSEILNRIEKLLAEIEGYGAVTVSVSEGVVRITGEVIDNAAQDRLTQIINRVAGVVAIENETEISGTLEERLAPAMERIAARTRNLLANGPIFLVALAAFAAVAAGGWLLTTRIGIWTWLAPNAFIADVYRAVARILFILTGLVLALDIMNATALIGAVLGAAGVVGLALGFAVRDTVENFIASILLSLRQPFRPNDFVDIQGDQGTVARLTSRATILISPEGNHIRIPNATVFKGRIVNFTRDPRRRFGFDLGVDADADLAAALSTAVAALDAQPFVLDDPEVGAWISEVGDSNVILTFTGWVDQTRVDFAKARGEAIRAAKMALEAAGFGLPEPIYRVRLDSAAEAAPAPAKDTAAKQAPREAVSADLPEAADPERTELAAAGAARREREGLDGGENLLDAQQQAE
SIO_010081: R2C4_RS20535
subclass of: SO_0000673
so part of: R2C4_RS20535
location: complement(2303..3712)
location: region:2303-3712:-1
so has part: feature:2303-3712:-1:exon

WP_244940839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2303-3712:-1:exon

R2C4_RS20540
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20540
old locus tag: R2C4_20555
so part of: sequence
location: 3942..4307
location: region:3942-4307:1
so has part: feature:3942-4307:1:exon
subclass of: SO_0000010

position:3942:1
position: 3942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4307:1
position: 4307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3942-4307:1:exon

R2C4_RS20540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20540
old locus tag: R2C4_20555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558564.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTTAAGAQTPVLILTPNALEAADISDYLLRRGYPAVSTETRLDGLAAALDYAAQPPHLVFFGFPLSVPAARDWLQSAMAKEWRLILINGDTTEPELRSLPMLSRPFATPHLDAAMQLLGE
SIO_010081: R2C4_RS20540
subclass of: SO_0000673
so part of: R2C4_RS20540
location: 3942..4307
location: region:3942-4307:1
so has part: feature:3942-4307:1:exon

WP_058285669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3942-4307:1:exon

R2C4_RS20545
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20545
old locus tag: R2C4_20560
so part of: sequence
location: 4499..4696
location: region:4499-4696:1
so has part: feature:4499-4696:1:exon
subclass of: SO_0000010

position:4499:1
position: 4499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4696:1
position: 4696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4499-4696:1:exon

R2C4_RS20545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20545
old locus tag: R2C4_20560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558549.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CsbD family protein
translation: MDDDRITGKWTELKGRLRETYGELTENELEETKGERQKLEGLLQQRLGKTKDDIRETVDRMLESL
SIO_010081: R2C4_RS20545
subclass of: SO_0000673
so part of: R2C4_RS20545
location: 4499..4696
location: region:4499-4696:1
so has part: feature:4499-4696:1:exon

WP_141892182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4499-4696:1:exon

R2C4_RS20550
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20550
old locus tag: R2C4_20565
so part of: sequence
location: 4698..5213
location: region:4698-5213:1
so has part: feature:4698-5213:1:exon
subclass of: SO_0000010

position:4698:1
position: 4698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5213:1
position: 5213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4698-5213:1:exon

R2C4_RS20550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20550
old locus tag: R2C4_20565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558521.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyridoxamine 5'-phosphate oxidase family protein
translation: MARRPDSDADAAAQLWKRLEDTRTGMLSVDGSSQHPQPMSHFSDPDSGEIWFITSADTDLVAAVGLGAEATFCYQSQKGDYHASVKGPLVVYQSEEKLDSLWSPPVAAWFEKGREDPKVTLLQLTPREAAIWASDSNPILVGLKMLNAAMRDDVSEPDVGIHRVINFSDVA
SIO_010081: R2C4_RS20550
subclass of: SO_0000673
so part of: R2C4_RS20550
location: 4698..5213
location: region:4698-5213:1
so has part: feature:4698-5213:1:exon

WP_027245959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4698-5213:1:exon

R2C4_RS20555
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20555
old locus tag: R2C4_20570
so part of: sequence
location: complement(5337..7916)
location: region:5337-7916:-1
so has part: feature:5337-7916:-1:exon
subclass of: SO_0000010

position:5337:-1
position: 5337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7916:-1
position: 7916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5337-7916:-1:exon

R2C4_RS20555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20555
old locus tag: R2C4_20570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558614.1
GO function: GO:0004673 - protein histidine kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HWE histidine kinase domain-containing protein
translation: MPDETSSAAEAQVDLTTCDQEPIHIIGHVQSFGCLIAVSADWIIAHASANCAEVLGLDESDLAGRPVMDILSPQALHDLRTRMQMLRMQQSAVRVFGYDLRGDGQKFDVSIHQSGRLFVLEFERRAADARDVHDPGLVQALIGRVQRHGALDAMAKEAARGLKALSGYGRVMVYKFEEDGSGTVIAEARDSDLEPFLGLRYPASDIPKQARALYVRNMLRIIPDVTAPVHPVLPETDPNGEPLDLSLAVTRAVSPIHMEYLRNMGVAASMSVSILRNGQLWGLFACHHPKPQYLSYEMRTSVELFAQLFNYELAQMEMADELGDIDRSRELHDSLMPQLSNGSNLFAAFEDLCSGIGEVIPFDGAAIYSDGQYKSTGSAPVEEEFLGLVRFLNTTPPAQVYSNSNLIKRYPATDGFADRVAGLLAIPVSRKPRDYFVLFRREVIKSVTWAGNPEKPAEPGPNGLRLTPRKSFEAWQEVARGHCQPWKQREQRTAEALRTTLIEVVLKLSDENNAARKRAQDQQELLIAELNHRVRNILNLIRGLVSQGKESVKSADAFGEVLDARIHALARAHDQLTGSEWDWSPLTVLIGTETEAFLSGKASRVSIDGEALELSPAAFTCMALVIHELVTNSVKYGALSDSSGRVEIRTALNGDGTAALSWRECDGPPVQAPRRRGFGTTLIEQSVPFELRGEANVRYQLTGLEADFVLPARHVRKAEKPAAPAPKTGARQASVVPRLSGNALVLEDNMIIAMDAADMLSQLGAEKVETCSGVETALNLLERGGTQFVLADMNLGPENSLPVVERCRELGIAVVLATGYGATDDITKRFPGLKILKKPYTVEQLSAVLETMAFAGNAG
SIO_010081: R2C4_RS20555
subclass of: SO_0000673
so part of: R2C4_RS20555
location: complement(5337..7916)
location: region:5337-7916:-1
so has part: feature:5337-7916:-1:exon

WP_141892183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5337-7916:-1:exon

R2C4_RS20560
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20560
old locus tag: R2C4_20575
so part of: sequence
location: complement(7909..8472)
location: region:7909-8472:-1
so has part: feature:7909-8472:-1:exon
subclass of: SO_0000010

position:7909:-1
position: 7909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8472:-1
position: 8472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7909-8472:-1:exon

R2C4_RS20560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20560
old locus tag: R2C4_20575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: biliverdin-producing heme oxygenase
translation: MAKAQYENLRARLRGDTRHCHAALDDQVTRLDQQGTEGYARFLLLQWRLFAALEPVSQSAACAPVIRDLTQRAGADLEQLGRLAPVPRLPLDPHPLAVDYVVSGSRLGAKVLRKRWLDRGLPETAYAGSYLSAPPYMDYWRGYVARAEALPAGGAAADRIVTDATGLFEFCLECIDAESAEGRAVHA
SIO_010081: R2C4_RS20560
subclass of: SO_0000673
so part of: R2C4_RS20560
location: complement(7909..8472)
location: region:7909-8472:-1
so has part: feature:7909-8472:-1:exon

WP_141892184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7909-8472:-1:exon

R2C4_RS20565
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20565
old locus tag: R2C4_20580
so part of: sequence
location: 8893..10257
location: region:8893-10257:1
so has part: feature:8893-10257:1:exon
subclass of: SO_0000010

position:8893:1
position: 8893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10257:1
position: 10257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8893-10257:1:exon

R2C4_RS20565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20565
old locus tag: R2C4_20580
EC number: 2.7.11.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558531.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine/threonine-protein kinase
translation: MPHDIFSADPAPACELPCGFKLLQGQYQIERPLLSGGFGITYLARDSLERRVVIKECYPAGLCRRSGTDVEPSAPEHARSCRNVLRAFLREAHLLARARHPAIVGVHQVFKENQTAYIAMEFIDGLDLLTVREEQPERLTGPVLRRILDQSLEALDCLHRLGVLHRDISPDNILLGKDGTVTLIDFGAACGSTPDDSTALPMLLAVKDGYSAHELYSPDLPQRPACDLYALGATLYYLITGAPPAASQKRLAALLAGSPDPCRPLLGGPWAADPALLATVDMAMSVLPAERFQSASGWAAALAEEDAPQQAADPQTGPAAPAAAAACADDGSRLAAAISELVAKTNDSLKPGLPRSARQAQTPPAAPPSGPRRPLVNIFGEPVTDLEAWLEEEDAISWRKKIAPSAQQPPGAAPVPLADPSDPALGLRRDKPTFAGRLRRIFGRPANSPQTVKN
SIO_010081: R2C4_RS20565
subclass of: SO_0000673
so part of: R2C4_RS20565
location: 8893..10257
location: region:8893-10257:1
so has part: feature:8893-10257:1:exon

WP_141892185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8893-10257:1:exon

R2C4_RS21440
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS21440
so part of: sequence
location: 10269..11603
location: region:10269-11603:1
so has part: feature:10269-11603:1:exon
subclass of: SO_0000010

position:10269:1
position: 10269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11603:1
position: 11603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10269-11603:1:exon

R2C4_RS21440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS21440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005977274.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FHA domain-containing protein
translation: MKFIKDIIGEKRERVRLDGAAAPAAEPVQPPAEDTGSRAPFSLGSSFRLDPEPGPPPASPDAAAALTEAFRDPPDVPAADLDGEPDDDFAGLSGPEPEEDAIAAFFAREQTRTAAPDRPDTAAFFAAPEHDTAEADPAEAPEEDFFAQPEHANDDTAEAVAADPDFSRLQQPEPDADTARPYRIFTRSHTAGRTPDAMGDRTETAAAPAPELDPQPEVQPAVQPEPAFIAAEPPAPQAAAAPAAQPAWEAPPAEAPQAAVCAPAAAPADAPIDVPAPSMGRGASRAGRVKTRLLGFSPAQAAASDPFARSAEAAAPGYTQFPVGWLAIVQGPGRGAAFTLFSGVTVIGRGADQTVRLDFGDNSISRDNHAAIAYDPEQKSFFIGHGGKANLVRRNGRPVLSTEALSAGDVIRIGETSLRFVPLCGADFGWDQPQHSDAADAAFR
SIO_010081: R2C4_RS21440
subclass of: SO_0000673
so part of: R2C4_RS21440
location: 10269..11603
location: region:10269-11603:1
so has part: feature:10269-11603:1:exon

WP_244940840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10269-11603:1:exon

R2C4_RS20575
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20575
old locus tag: R2C4_20590
so part of: sequence
location: 11587..12549
location: region:11587-12549:1
so has part: feature:11587-12549:1:exon
subclass of: SO_0000010

position:11587:1
position: 11587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12549:1
position: 12549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11587-12549:1:exon

R2C4_RS20575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20575
old locus tag: R2C4_20590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296515.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein phosphatase 2C domain-containing protein
translation: MLHSAEIEYDAATAISQGRRERQEDAVAADFPAGTGTGFAVLADGMGGHAAGDIASRIVVTEVFSELKLQAGDPAALEQAIGAVLQQAANGADACLGEYASHQPQARGMGATLLAPVLFCDRLYWISAGDSPLYLFREGRLIRLNADHSMASELDGLVAEGRMDAAEAASHPDRHCVTSVLTGAGIPRLDCRSAPVRLQAGDIVLAASDGLQFLPEAEIAAVLAAERLSPSARIGAVLMQRLEALNAPEQDNAALCVIKPFDPRAGHPEPAPAPAPAQPAPPPQTPAPRPRAGRRVVTLLASATWRGAPAASQTKTDAPV
SIO_010081: R2C4_RS20575
subclass of: SO_0000673
so part of: R2C4_RS20575
location: 11587..12549
location: region:11587-12549:1
so has part: feature:11587-12549:1:exon

WP_141892186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11587-12549:1:exon

R2C4_RS20580
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20580
old locus tag: R2C4_20595
so part of: sequence
location: 12546..13739
location: region:12546-13739:1
so has part: feature:12546-13739:1:exon
subclass of: SO_0000010

position:12546:1
position: 12546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13739:1
position: 13739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12546-13739:1:exon

R2C4_RS20580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20580
old locus tag: R2C4_20595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296516.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLPQRDITPLAGQLEHTLSTGLLPPDVTGWGSQLLQRLRQPVRVAVTGAPGTGKSALIDMLLGRVVIGKTAAGLPVEICYGPEEQVVFDTPAGTRRQQAGCLADSAVPPDALRVRQHLPDLRLRAHSFCEIPLAGPPGRQQDTLQQAAAMADIILWCSETFPEAEQALWSAMPDSTKDHSFLVLTMADRQIMRGILPGLIQSLEPVAAEEFLGVYPVAAIQGLTAQNAGAPAEDLWRSSGGRQLAEDVQRQIGLGRASDADQAELLIRQFGGPLPADAPPPPAASPAAAPPAPAASLAAALDQLQSGAEDMLAQAEAAGGPQAGPVLAHCMDLIRSLTASLETLPGSAAVSAARDAAQDGEELLMLCQLEQDEDAAIDAVTLLFQLKKELAEVPPG
SIO_010081: R2C4_RS20580
subclass of: SO_0000673
so part of: R2C4_RS20580
location: 12546..13739
location: region:12546-13739:1
so has part: feature:12546-13739:1:exon

WP_141892187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12546-13739:1:exon

R2C4_RS20585
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20585
old locus tag: R2C4_20600
so part of: sequence
location: 13798..15858
location: region:13798-15858:1
so has part: feature:13798-15858:1:exon
subclass of: SO_0000010

position:13798:1
position: 13798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15858:1
position: 15858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13798-15858:1:exon

R2C4_RS20585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20585
old locus tag: R2C4_20600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296517.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dynamin family protein
translation: MNMEAQIESATDIRASARPTNLNAGLEPLAAFARKAQRLDTALAALAEVSGERVRRSLARLQAELAAFEPSVTLLGQVKSGKTSLVNAMAGWADLLPSDVNPWTSVVTSLHLEPDGTRTENKASFQFMTEDEWDRLTTKGGRIGEMAGRAGAGSELQKIRAQIEEMRERSRQRLGRKFELLMGQKHDYGYFDKNLIERYICLGDDFGGEEPGAVDEQGRFADITRAADLYLNCQSVPHRLCLRDTPGVNDTFMMREQITIQAIRDSRICVVVLSAGQALTSVDMGLIRMISNLKSREVVIFVNRIDELADPANQVAEIEASIRQTLQAHHGPQEATILFGSAYWANKVLTGGLEDMDPASSAALLSWAEASVNASHAKATAQNMVWELSGIPALNRAVCERIAADLGTPLLTRIAASATTAATGQQAANAVMVQGEGSGGGANLHDVRTAFEDLCQTHLEALEAEAGQVLDAFRDRADRAHATFTDRATHALIDHLEKWGEDCHWEYDPAGLRMLLRSAYSVMASRLQSAAQTRYEAAVQDVAELLYDGFGPAVEGIQLAVPEVPQPASPVALAQSIALDFNDSWWASWWRRTRGYKAFAKQFRSLIAGETEDFMTQLKTVQTADARAAILARLQGFFDDQRDILLEIADCRRGGGDMQALFAGDEARRRQTQTATALETLRSFTA
SIO_010081: R2C4_RS20585
subclass of: SO_0000673
so part of: R2C4_RS20585
location: 13798..15858
location: region:13798-15858:1
so has part: feature:13798-15858:1:exon

WP_141892188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13798-15858:1:exon

R2C4_RS20590
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20590
old locus tag: R2C4_20605
so part of: sequence
location: 15855..16802
location: region:15855-16802:1
so has part: feature:15855-16802:1:exon
subclass of: SO_0000010

position:15855:1
position: 15855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16802:1
position: 16802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15855-16802:1:exon

R2C4_RS20590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20590
old locus tag: R2C4_20605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558523.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dynamin family protein
translation: MTQHTAIPAPLAPDAAPARKPRLALMGEFSAGKSTLTNLLAGRAPLPTRVTATRLPPVWLSHGPEGASLTGTDGSETEVPLEDIAAAPLESTALIRLTLPAEALELCDLIDMPGISDPNMPASVWQALLPEVDSVIWCTHATQAWRQSEAAAWEEISSRLSGPSTLLITHFDKLRNPRDRDRVLRRVQKETGDAFNAIFPLSLSQALTAGDDMEAWKTSGADRFAEYLVDLLLNWAEPGRRPAQAAAPAQPQSAPQIAPQAGGGPRAEVLDFGSKREAAASAAPASRVMPRRVAPPAKRSQRPGRARPETQPAGD
SIO_010081: R2C4_RS20590
subclass of: SO_0000673
so part of: R2C4_RS20590
location: 15855..16802
location: region:15855-16802:1
so has part: feature:15855-16802:1:exon

WP_141892189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15855-16802:1:exon

R2C4_RS20595
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20595
old locus tag: R2C4_20610
so part of: sequence
location: 16860..17243
location: region:16860-17243:1
so has part: feature:16860-17243:1:exon
subclass of: SO_0000010

position:16860:1
position: 16860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17243:1
position: 17243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16860-17243:1:exon

R2C4_RS20595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20595
old locus tag: R2C4_20610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558595.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLARQLDTLRQSADGCRLAAFGDLGASIVLRSSSAASHPQEYLDALCQQARRGFLMLDAAAQAGPEAACPPADDILMLVPGEARLCIRAPDGSGDALLCACSDADTAARLAAPARALLAGLGGGAG
SIO_010081: R2C4_RS20595
subclass of: SO_0000673
so part of: R2C4_RS20595
location: 16860..17243
location: region:16860-17243:1
so has part: feature:16860-17243:1:exon

WP_141892190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16860-17243:1:exon

R2C4_RS20600
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20600
old locus tag: R2C4_20615
so part of: sequence
location: 17240..17917
location: region:17240-17917:1
so has part: feature:17240-17917:1:exon
subclass of: SO_0000010

position:17240:1
position: 17240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17917:1
position: 17917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17240-17917:1:exon

R2C4_RS20600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20600
old locus tag: R2C4_20615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSPARQLPGAKPAPDALLQALRQLAQPVQALTAQAQRAAAGQEPLLPALLREIGETVLPREITLCIGQAPAAVLTAAHRRLAGLSLGGTAEAGAAPEDPAAAARLFAARLRRLEAQAAGAGITFRRRPCAAPQGAGSCTAAQLQEALAAASRSPLGTLRSAAAAQALAWIHCPAGAQAPDSGGPPPPAATAAGGPQRLCRQRRPPGIGQNARPQARLPAAAGLT
SIO_010081: R2C4_RS20600
subclass of: SO_0000673
so part of: R2C4_RS20600
location: 17240..17917
location: region:17240-17917:1
so has part: feature:17240-17917:1:exon

WP_141892191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17240-17917:1:exon

R2C4_RS21285
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS21285
so part of: sequence
location: 17871..18023
location: region:17871-18023:1
so has part: feature:17871-18023:1:exon
subclass of: SO_0000010

position:17871:1
position: 17871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18023:1
position: 18023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17871-18023:1:exon

R2C4_RS21285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS21285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAHRPDCLLLPVSPDLRILAAAHEDELLLLALPPGAVPGLIETWTALFS
SIO_010081: R2C4_RS21285
subclass of: SO_0000673
so part of: R2C4_RS21285
location: 17871..18023
location: region:17871-18023:1
so has part: feature:17871-18023:1:exon

WP_167510299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17871-18023:1:exon

R2C4_RS20605
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20605
old locus tag: R2C4_20620
so part of: sequence
location: complement(18044..18574)
location: region:18044-18574:-1
so has part: feature:18044-18574:-1:exon
subclass of: SO_0000010

position:18044:-1
position: 18044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18574:-1
position: 18574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18044-18574:-1:exon

R2C4_RS20605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20605
old locus tag: R2C4_20620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013220272.1
GO function: GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: redoxin domain-containing protein
translation: MPAPELDTVQWFNSPGPVTLQSLRGRVVVIEAFQMLCPGCVRHGLPLAQKVRAAFPQDRVAVLGLHTVFEHHAAMTPVSLAAFLQEYRITFPVGVDRPGGGPMPRTMEAYGMRGTPSLLLIGRDGELRAHHFGEVSELRLGAEIAALMAEDAPAAAGAAPDGAGPAAGCGPAGCTV
SIO_010081: R2C4_RS20605
subclass of: SO_0000673
so part of: R2C4_RS20605
location: complement(18044..18574)
location: region:18044-18574:-1
so has part: feature:18044-18574:-1:exon

WP_141892192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18044-18574:-1:exon

R2C4_RS20610
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20610
old locus tag: R2C4_20625
pseudo: true
so part of: sequence
location: complement(18652..19406)
location: region:18652-19406:-1
so has part: feature:18652-19406:-1:exon
subclass of: SO_0000010

position:18652:-1
position: 18652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19406:-1
position: 19406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18652-19406:-1:exon

R2C4_RS20610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20610
old locus tag: R2C4_20625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558524.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: R2C4_RS20610
subclass of: SO_0000673
so part of: R2C4_RS20610
location: complement(18652..19406)
location: region:18652-19406:-1
so has part: feature:18652-19406:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18652-19406:-1:exon

R2C4_RS20615
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20615
old locus tag: R2C4_20630
so part of: sequence
location: complement(19615..19947)
location: region:19615-19947:-1
so has part: feature:19615-19947:-1:exon
subclass of: SO_0000010

position:19615:-1
position: 19615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19947:-1
position: 19947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19615-19947:-1:exon

R2C4_RS20615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20615
old locus tag: R2C4_20630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020042125.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GYD domain-containing protein
translation: MPRFIVTGCYTASAMKAMVERPSDREAASRALVEAAGGTQESFFLTTGDSDFAIHVNIDDVSALLAGLLAVGASGAVSNLRTVRAFTADEFLEMQKKASGIAGAYKAPGA
SIO_010081: R2C4_RS20615
subclass of: SO_0000673
so part of: R2C4_RS20615
location: complement(19615..19947)
location: region:19615-19947:-1
so has part: feature:19615-19947:-1:exon

WP_141892193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19615-19947:-1:exon

R2C4_RS20620
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20620
old locus tag: R2C4_20635
so part of: sequence
location: complement(20097..20555)
location: region:20097-20555:-1
so has part: feature:20097-20555:-1:exon
subclass of: SO_0000010

position:20097:-1
position: 20097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20555:-1
position: 20555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20097-20555:-1:exon

R2C4_RS20620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20620
old locus tag: R2C4_20635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558610.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Lrp/AsnC family transcriptional regulator
translation: MDSKDRQIIRALQRDGRMTNQDLAEAVNLSPSPCLRRVRNLEASGVIRGYSADVDATAYGLAITVFVRIRLERHNETDVQSFEGRVRRMDEVLECHVLTGAMDYQLRVLVPDLEAYESFIRNRIHPIGGIASIDTSFVYGTVKKTAVFPPAS
SIO_010081: R2C4_RS20620
subclass of: SO_0000673
so part of: R2C4_RS20620
location: complement(20097..20555)
location: region:20097-20555:-1
so has part: feature:20097-20555:-1:exon

WP_058285682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20097-20555:-1:exon

R2C4_RS20625
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20625
old locus tag: R2C4_20640
so part of: sequence
location: 20669..21871
location: region:20669-21871:1
so has part: feature:20669-21871:1:exon
subclass of: SO_0000010

position:20669:1
position: 20669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21871:1
position: 21871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20669-21871:1:exon

R2C4_RS20625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20625
old locus tag: R2C4_20640
EC number: 4.4.1.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005657735.1
GO function: GO:0018826 - methionine gamma-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0019346 - transsulfuration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methionine gamma-lyase
translation: MKRSAGFATRAIHHAYNPQDHDGALTPPLHLTSTFTFETAEAGGEMFAGERQGHIYSRISNPTCDLLEQRIAVLEGAEAGLALSSGMGAITAVLWTLLSPGDEVIVDKTLYGCTFAFMRHGLAKWGVTITHVDMTDPENLRAAVSEKTRVVYFETPANPNMRLVDIAASAEIAHAAGATVVVDNTYATPYLTRPIEHGADIVLHSATKYLGGHGDVVAGLVAGTAEQIAEIRLVGMKDMTGAVMAPFNAMLILRGIKTLNLRMDRHCATARTVAAYLEAHPAVGAVYFPGLDSFEQRAIAERQMDQPGAMIAFEAKGGLAGGIAFMNRLEMIQRAVSLGDAETLIQHPASMTHSTYTPEERAEHGISDGLIRLSVGLEDAEDIIADLEQALAPAALQAAE
SIO_010081: R2C4_RS20625
subclass of: SO_0000673
so part of: R2C4_RS20625
location: 20669..21871
location: region:20669-21871:1
so has part: feature:20669-21871:1:exon

WP_141892194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20669-21871:1:exon

R2C4_RS20630
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20630
old locus tag: R2C4_20645
so part of: sequence
location: 21894..24290
location: region:21894-24290:1
so has part: feature:21894-24290:1:exon
subclass of: SO_0000010

position:21894:1
position: 21894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24290:1
position: 24290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21894-24290:1:exon

R2C4_RS20630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20630
old locus tag: R2C4_20645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558600.1
GO function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO process: GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein
translation: MRPDPAHLKTIEQRLLWLSHWMVHHANHIRPKADGIKVGGHQASSASMVSIMTALYFSALRPEDRVAVKPHAAPVFHALQYLMGNQTREKMENFRGFGGVQSYPSRTKDTCDVDFSTGSVGLGVAITSFASLIQDYITAKSWGADAPMGRMVALVGDAELDEGNIYEALQEGWKNDLRNCWWIIDYNRQSLDGIVREGLFERIEKIFDAFGWDVVRVKYGVLQRAAFAEPGGDKLRGWIDACPNQDYSALTFMGGAVWRQRLLDDLGDQGDVTALIERRSDAELAALMENLGGNCVETMAETFDAITHDRPVCFLAYTVKGWGTPIAGHKDNHGGLMNSAQFAQWQAHMGVPEGQEWDPLATVQDPEGLRQFLSEVPFFAQGTRRYADARLPVPEIAAPAGREISTQMAFGKILDDLSKGSSDLADRIVTTSPDVTGTTNLGPWVNRRKLFSRTAQADAFIEHRIPSTAKWEFTPEGQHIELGIAEMNLMLLLGAAGLSHSLFGKRLIPIGTVYDPFVSRGLDALNYACYQDARFILAGTPSGVTLAPEGGAHQSIGTPLIGMSQDGLAAFEPAFADELAVIMQWAFDYVQRDGEGDPDERTWLRDETGGSVYLRLTTNPLEQPGKRADDAFRQGTIDGAYWLRPPGPNCEVVIAYQGAVAPEAIKAAGMIAEERRDIGVLAVTSADRLNSGWTAAQRARSRGNAAAQSHAETLMGALPPHCKLITVIDGHPATLSWLGSVAGHQTIPMGVEHFGQTGTIGDLYRHHGIDAAAIVEKVNGLTAGKRAGRGAFAAMARS
SIO_010081: R2C4_RS20630
subclass of: SO_0000673
so part of: R2C4_RS20630
location: 21894..24290
location: region:21894-24290:1
so has part: feature:21894-24290:1:exon

WP_141892195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21894-24290:1:exon

R2C4_RS20635
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20635
old locus tag: R2C4_20650
so part of: sequence
location: complement(24333..25106)
location: region:24333-25106:-1
so has part: feature:24333-25106:-1:exon
subclass of: SO_0000010

position:24333:-1
position: 24333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25106:-1
position: 25106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24333-25106:-1:exon

R2C4_RS20635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20635
old locus tag: R2C4_20650
EC number: 3.5.2.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011539379.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 5-oxoprolinase subunit PxpA
translation: MTRTVDLNADMGESFGAWSLGDDAGLLDIVTSANIACGYHAGDPDVMAATMKHAVAKGTGIGAHPGFPDLQGFGRRWMSVPHETLGNMVRYQLGAAQAMARAAGGAVRHLKLHGALANMASEDLAMARACYQAALSVDPEIIVMVLAGTAQQQAAQELGCKTACEIFADRAYNDDATLVDRSLPGAVIHDPAEAGRRMVEMVREGAIITASGKRIPARIDTICLHGDTPAAVAIAADVRRALQDSGVGLAQFSGAVL
SIO_010081: R2C4_RS20635
subclass of: SO_0000673
so part of: R2C4_RS20635
location: complement(24333..25106)
location: region:24333-25106:-1
so has part: feature:24333-25106:-1:exon

WP_141892196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24333-25106:-1:exon

R2C4_RS20640
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20640
old locus tag: R2C4_20655
so part of: sequence
location: complement(25116..26132)
location: region:25116-26132:-1
so has part: feature:25116-26132:-1:exon
subclass of: SO_0000010

position:25116:-1
position: 25116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26132:-1
position: 26132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25116-26132:-1:exon

R2C4_RS20640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20640
old locus tag: R2C4_20655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558604.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: urea amidolyase
translation: MSGSLTILRAGPGMTVQDLGRPGWLEYGVSRGGAADRLALAEGAALLGQGADLAAVEMAGLGGEFQAGSDLRIALTGAPMRASIDGTAAAWNASHLLPAGARLTIGAARSGSYGYLHVGGGFHTPVHLGARSAHLAAGIGAALAQGGVLETGPDGGQGTGLGLAPDDRFEGGTVRVVASLQTALFPQAELERFEGTAFRRGARGNRMGVPLESDGEGFRPDGARTVVSEVIVPGDIQVTGDGTPYVLLSECQTTGGYPRIGTVLPCDLPLLAQSAAGAELRFRFIPLEEAVGLERAEAERREGLRGRCHPLIRDPRSMSNLLSYQLISGAIAGEEDVL
SIO_010081: R2C4_RS20640
subclass of: SO_0000673
so part of: R2C4_RS20640
location: complement(25116..26132)
location: region:25116-26132:-1
so has part: feature:25116-26132:-1:exon

WP_141892197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25116-26132:-1:exon

R2C4_RS20645
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20645
old locus tag: R2C4_20660
so part of: sequence
location: complement(26129..26875)
location: region:26129-26875:-1
so has part: feature:26129-26875:-1:exon
subclass of: SO_0000010

position:26129:-1
position: 26129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26875:-1
position: 26875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26129-26875:-1:exon

R2C4_RS20645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20645
old locus tag: R2C4_20660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558612.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxyltransferase domain-containing protein
translation: MAEERAAPPAPDIRTVGVDGMLVSFGSRLSEPANRAALAFRAALAAESWDGVEEVSTSLVSAYVRFDLRHLDHAGLRARLESLLAQRDWYAAALPGQRRLWRIPAVFGTELAPQLPQAAAAAGMTEAEAVASLSAARVRVQTIGFAPGQPYLGELPEAWDIPRQSQLTTRIPEGALAVAIRQLVLFSVATPTGWMHAGQTAVRLFRPDAEEPFLLRPGDEVQFSAITPEELQGLRRDPLGGARAEDLS
SIO_010081: R2C4_RS20645
subclass of: SO_0000673
so part of: R2C4_RS20645
location: complement(26129..26875)
location: region:26129-26875:-1
so has part: feature:26129-26875:-1:exon

WP_141892198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26129-26875:-1:exon

R2C4_RS20650
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20650
old locus tag: R2C4_20665
so part of: sequence
location: complement(26875..28170)
location: region:26875-28170:-1
so has part: feature:26875-28170:-1:exon
subclass of: SO_0000010

position:28170:-1
position: 28170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26875-28170:-1:exon

R2C4_RS20650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20650
old locus tag: R2C4_20665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558585.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO function: GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO process: GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TRAP transporter large permease subunit
translation: MSVAALSIILLVLLFLFLGAGLWVAFALLGVGIAAMALFTEAPLGLVMATTMWGHSNSWALAALPLFIWMGEILFRSRLSEDMFTGLSPWMNRLPGQLLHVNVFACGIFAAVSGSSAATAATIGKLSIPELSRRGYPEKLVIGTLAGSATLGLLIPPSIILIVYGVATEQSIARLFVAGVLPGVLLVGLFVGYVVVWALLNRSQLPTEDIAATFREKLKRARRLVPVVLLIGGVIGSIYAGIASPTDAAAVGVVLALLLSWQSGSLTRQSFTEGLMGATITSCMIAFILAGASFLTVAMGFTGIPRILAEWIGSLNLSTFTLLAALTIFFVIMGCFLDGISVVVLTASVIMPMVLEAGIDPLWFGIFLVIVVEMSQITPPVGFNLFVLQSLTGRDILTVAKAALPFFFLMVLALVLIVLFPSIVTFLPEQM
SIO_010081: R2C4_RS20650
subclass of: SO_0000673
so part of: R2C4_RS20650
location: complement(26875..28170)
location: region:26875-28170:-1
so has part: feature:26875-28170:-1:exon

WP_141892199.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26875-28170:-1:exon

R2C4_RS20655
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20655
old locus tag: R2C4_20670
so part of: sequence
location: complement(28180..28728)
location: region:28180-28728:-1
so has part: feature:28180-28728:-1:exon
subclass of: SO_0000010

position:28180:-1
position: 28180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28728:-1
position: 28728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28180-28728:-1:exon

R2C4_RS20655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20655
old locus tag: R2C4_20670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558570.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TRAP transporter small permease
translation: MRPVLDFIYRAAGGLAALFIVAIVALVFAQVCLNLADKIAAALTGTGVGLTIPSYADFTGFFLAASTFLALAYALRAGGHIRVTLVTNRLPAAAHRAAELGVILLALAMSGFATWYMGLLLLESLEFGDRSAGMVSVPLWLPQAPVALGLAILTLALADELISVLRGALPSWEGKGENLLSE
SIO_010081: R2C4_RS20655
subclass of: SO_0000673
so part of: R2C4_RS20655
location: complement(28180..28728)
location: region:28180-28728:-1
so has part: feature:28180-28728:-1:exon

WP_058285689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28180-28728:-1:exon

R2C4_RS20660
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20660
old locus tag: R2C4_20675
so part of: sequence
location: complement(28787..29758)
location: region:28787-29758:-1
so has part: feature:28787-29758:-1:exon
subclass of: SO_0000010

position:28787:-1
position: 28787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29758:-1
position: 29758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28787-29758:-1:exon

R2C4_RS20660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20660
old locus tag: R2C4_20675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297917.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TRAP transporter substrate-binding protein
translation: MKITRLLGGAAVLIAGLSVPALAATWDMPTPYPDATFHTKNIAEFASDVAEATEGGLEIKVHSAGSLFKHPEISKAVRSGQVPAGEFFLSLLANDNPAFGADSLPFLATSYEEAERLWAAQKDVIGGLLDEQGLMALYAVPWPPQGLYTTKEINSVEDLAGLKFRTYNATLEQFANLAGAAPTQVEVPDIPQAFSTGRVEAMITSPSTGVNSKAWDFLSHYTDIQAWIPKNIVVVNKRAFRRLDEATQTAILEAAAEAEARGWEMSRAETSSQIEVLKENGITVVEPSQQLMEGLRAIGAEMLENWKGEAGEAGATLLNAYQQ
SIO_010081: R2C4_RS20660
subclass of: SO_0000673
so part of: R2C4_RS20660
location: complement(28787..29758)
location: region:28787-29758:-1
so has part: feature:28787-29758:-1:exon

WP_141892200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28787-29758:-1:exon

R2C4_RS20665
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20665
old locus tag: R2C4_20680
so part of: sequence
location: 29971..30492
location: region:29971-30492:1
so has part: feature:29971-30492:1:exon
subclass of: SO_0000010

position:29971:1
position: 29971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30492:1
position: 30492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29971-30492:1:exon

R2C4_RS20665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20665
old locus tag: R2C4_20680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297918.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: winged helix DNA-binding protein
translation: MAEKKPDSRRIVSSRHLAEGEGWELSELEFGLIIASNAFSRWMTRCMAAAGQPDLNPLEILILHNVNHRGKDKRLSDICFLLNIEDSHTVNYGLRKLLKAGLLASEKRGKEVFYRTSAEGAALCSAYRDVRRQCLLDGLSAADLPGKDLRELARSLRALSGHYDQASRAAASL
SIO_010081: R2C4_RS20665
subclass of: SO_0000673
so part of: R2C4_RS20665
location: 29971..30492
location: region:29971-30492:1
so has part: feature:29971-30492:1:exon

WP_141892201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29971-30492:1:exon

R2C4_RS20670
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20670
old locus tag: R2C4_20685
pseudo: true
so part of: sequence
location: complement(30523..31801)
location: region:30523-31801:-1
so has part: feature:30523-31801:-1:exon
subclass of: SO_0000010

position:30523:-1
position: 30523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31801:-1
position: 31801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30523-31801:-1:exon

R2C4_RS20670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20670
old locus tag: R2C4_20685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296466.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: R2C4_RS20670
subclass of: SO_0000673
so part of: R2C4_RS20670
location: complement(30523..31801)
location: region:30523-31801:-1
so has part: feature:30523-31801:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30523-31801:-1:exon

R2C4_RS20675
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20675
old locus tag: R2C4_20690
pseudo: true
so part of: sequence
location: 32390..>32785
location: region:32390-32785:1
so has part: feature:32390-32785:1:exon
subclass of: SO_0000010

position:32390:1
position: 32390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32390-32785:1:exon

R2C4_RS20675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20675
old locus tag: R2C4_20690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011339645.1
note: frameshifted; incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATPase
SIO_010081: R2C4_RS20675
subclass of: SO_0000673
so part of: R2C4_RS20675
location: 32390..>32785
location: region:32390-32785:1
so has part: feature:32390-32785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32390-32785:1:exon