Leisingera aquaemixtae strain R2C4 plasmid unnamed7.
type: Entry
definition: Leisingera aquaemixtae strain R2C4 plasmid unnamed7.
sequence version: NZ_CP041161.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP041161.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12141652
keyword: RefSeq
source: Leisingera aquaemixtae
organism: Leisingera aquaemixtae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP041161.1.\nBacteria and source DNA available from Sarah Glaven, 4555 Overlook\nAve SW, Washington, DC, 20375, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 70.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:39:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,246\nCDSs (total) :: 4,174\nGenes (coding) :: 4,133\nCDSs (with protein) :: 4,133\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 23 of 41\nPseudo Genes (incomplete) :: 22 of 41\nPseudo Genes (internal stop) :: 4 of 41\nPseudo Genes (multiple problems) :: 8 of 41\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 14269
topology: linear
so has quality: SO_0000987
location: 1..14269
location: region:1-14269:1
RO_0002162: 1396826

NZ_CP041161
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12141652
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leisingera sp. R2C4 Isolated from the Self-Regenerating Biocathode Consortium
author: Eddie, B.
author: Malanoski, A.
author: Bird, L.
author: Glaven, S.
journal: Unpublished

2
title: Direct Submission
author: Eddie, B.
author: Malanoski, A.
author: Bird, L.
author: Glaven, S.
journal: Submitted (18-JUN-2019) NCBI, Naval Research Lab DC, 4555 Overlook Ave SW, Washington, DC 20375, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:14269:1
position: 14269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-14269:1:source
so part of: sequence
organism: Leisingera aquaemixtae
mol type: genomic DNA
strain: R2C4
isolation source: Biocathode MCL, marine biofilm
plasmid: unnamed7
country: USA: Rutgers, NJ
collection date: 2009

1396826
type: Taxonomy
SIO_000068: taxonomy

R2C4_RS20335
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20335
old locus tag: R2C4_20350
so part of: sequence
location: <1..1081
location: region:1-1081:1
so has part: feature:1-1081:1:exon
subclass of: SO_0000010

position:1081:1
position: 1081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1081:1:exon

R2C4_RS20335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20335
old locus tag: R2C4_20350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558517.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 2
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: RQLETPSPEALKEIEAGIDRDLARGPGLRPPIADVVADAARHADPLPQAGREAAARDRADAERLRAAEEKGLVAVELPITGITAEALNRDRIVMDEDEMQELMSSISVNGLRLPIEVFEPANHEDAGKYALVSGYRRLTAYRRLNALSGGQRFQTIPAFIRAPGSIAEAMVAMIEENEVRAGLSQYERGRAAASAVHDGVFATVDEAVAVLFQNASKAKRSKIRSFALIHEELGDMLAYATGLNERQCLRLAGALRAGLAEDLRTALEQAGGRSAAEEWDAMLPLIDQAEGAPQDPSRGGRPKAVQKIERARKTRVARGITIERELGPSGYAIRFSGSEVTAELVDAVMDNVRHLLENG
SIO_010081: R2C4_RS20335
subclass of: SO_0000673
so part of: R2C4_RS20335
location: <1..1081
location: region:1-1081:1
so has part: feature:1-1081:1:exon

WP_141892152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1081:1:exon

R2C4_RS20340
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20340
old locus tag: R2C4_20355
so part of: sequence
location: complement(1316..2371)
location: region:1316-2371:-1
so has part: feature:1316-2371:-1:exon
subclass of: SO_0000010

position:1316:-1
position: 1316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2371:-1
position: 2371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1316-2371:-1:exon

R2C4_RS20340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20340
old locus tag: R2C4_20355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558560.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AraC family transcriptional regulator
translation: MPHNYQPRISASTLNDPLRAVEFMNGDAATISRNAGIGPRDLEGEISLKKFVDFCEHASEQLGLPDFGWRVGSVFNLQNLGTLGEYIMQAPTLGAALALFRNAFPMVQSDSELRLTVRGDTARLTYRILDTSIWPRQQDAELTLSVFHSLIRSATGPDWRPDLLSLEHESSALHSRSSAGPRCPVQYSASSNTLVFSAGLLDLPLADSENPAFKTASQSIVRTARQSERAAPVTVRVRRELLMRIGRESFEQTAIAAALGMSRRTLRRRLEDEGQKFSRLLAGCRMEIAKRMLLAPGAQLHDISERLGYSEVSAFERAFRQREGATPSQFRKQCCAEGAGECAASAGSAAN
SIO_010081: R2C4_RS20340
subclass of: SO_0000673
so part of: R2C4_RS20340
location: complement(1316..2371)
location: region:1316-2371:-1
so has part: feature:1316-2371:-1:exon

WP_141892153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1316-2371:-1:exon

R2C4_RS20345
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20345
old locus tag: R2C4_20360
so part of: sequence
location: 2531..3889
location: region:2531-3889:1
so has part: feature:2531-3889:1:exon
subclass of: SO_0000010

position:2531:1
position: 2531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3889:1
position: 3889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2531-3889:1:exon

R2C4_RS20345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20345
old locus tag: R2C4_20360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297897.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tryptophan 7-halogenase
translation: MAPQIGTFDIAIAGGGPSGSVAAVLLARAGFRVALATLPPRGPRYEGMSARVAAILARHRLPLAGIGPAAQRHVSWGGFQGGQNSEHPADRTAFDAGLLEAARAEGVSVIYGSVSSVRPEAGEIRLADGTCLSARLLFEARGRRAPRQPAELERTELAGPDTISVAGFVPPQAGDMETPRIEARPGGWVWSVPVDRDRLWLQAVGAASSLGQARGKTAVAALWESVLAETPLPRHPVVHAIAPRLAAPDLDPRCPRLGDAAVALDPLSGHGMFWAVSSALMAVPMARALLAGQADLARAFYRNRVAETFWRQARVGRDFYREAGFQTPFWQQRAAWPDEAPAHDTDIRPHVARRVVVQDGYLARREVLITRDAPGGAAFAAGQEIVPLLRRLNGQPLPDADRFHSALLPEAPPQAARAIHQWLLSQGFTEGAQIPWDTANRETDPCNYDPAA
SIO_010081: R2C4_RS20345
subclass of: SO_0000673
so part of: R2C4_RS20345
location: 2531..3889
location: region:2531-3889:1
so has part: feature:2531-3889:1:exon

WP_244940837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2531-3889:1:exon

R2C4_RS20350
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
gene: peaA
locus tag: R2C4_RS20350
old locus tag: R2C4_20365
so part of: sequence
location: 3865..5388
location: region:3865-5388:1
so has part: feature:3865-5388:1:exon
subclass of: SO_0000010

position:3865:1
position: 3865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5388:1
position: 5388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3865-5388:1:exon

R2C4_RS20350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
gene: peaA
locus tag: R2C4_RS20350
old locus tag: R2C4_20365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297898.1
GO component: GO:0042597 - periplasmic space [Evidence IEA]
GO function: GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO process: GO:0009310 - amine catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quinohemoprotein amine dehydrogenase subunit alpha
translation: MQLRPRGLTAALLISAAGAVPALASEELLKNTCSTCHTAEEGGLSRISGQRKTPEGWMMTLVRMQQAHGLEISAEDRRAIVQHLADTQGLAPSEAAPFRYALEKDPNAQESFDEPFASMCARCHTGARGLLQNRTAEEWELHMDFHVGHFPTIEYQALGRDREWYKIARTEIAGYLAEQNPLETAAWTDWQAAEKQPVAGDWVVMTDLPGIGEAYGKLTVSGDASPYQVSGEFVTANGTAHPASGQMNLYTGYEWRANLDIGGTAYRQVLALSEDGNSLMGRQFDRSNDALGAPLSGVREGAGSVILGTVPSAVPAGEAQVQVVGTGLDGLDSSSGEAEPNSFGAALTLAAEGNGVVTFSAGGAEGQIAHYTSLDSLKVEPEFTIARVGGGSEEGPAAVPAYFNAVGMWNGPDGEAGTEDDVRVGRVEAQWTVANAHEHAAHMKDTEFAGEMQANGIFAPAVAGPNPDRPFSANNAGELTVQAEAMGQQAEAMLIVTVQRFIDPPIR
SIO_010081: R2C4_RS20350
subclass of: SO_0000673
so part of: R2C4_RS20350
location: 3865..5388
location: region:3865-5388:1
so has part: feature:3865-5388:1:exon

WP_141892154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3865-5388:1:exon

R2C4_RS20355
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
gene: peaB
locus tag: R2C4_RS20355
old locus tag: R2C4_20370
so part of: sequence
location: 5405..6829
location: region:5405-6829:1
so has part: feature:5405-6829:1:exon
subclass of: SO_0000010

position:5405:1
position: 5405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6829:1
position: 6829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5405-6829:1:exon

R2C4_RS20355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
gene: peaB
locus tag: R2C4_RS20355
old locus tag: R2C4_20370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558538.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO process: GO:0043687 - post-translational protein modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quinohemoprotein amine dehydrogenase maturation protein
translation: MKDFHYQPANAHRVAVEGREVLFHVPTTSIFEMDGVDRDILDYAAQAQAFSMDEFEARFAAKDAAARLDGLVRLDIVNDGRPLQPERPPIEIETFPLTTIVLNVNTGCNLACSYCYKEDLAVPSKGQKMAFDTARKSAEMLLAENPDRDSYNIVFFGGEPLSNLPLIRQVVDWAEPHFEALGKAVNFSLTTNATLLTEPVIDWLDEHRFGLTVSIDGPKAQHDLNRKTVGGKGTYDTVAAKARLLLSRYRSKPVGARVTLTAGITNIVEIWDHLINDIGFAEVGFSPVTSGDMDAFNLNGAELLEVFEGMKSLGRLYVEAALEGRNIGFSNMHQMMNDLYEGRSKALPCGAGVGMLAVNHDGALNLCHRFTGSEMDQFGTVDEGIKRQELSGFIKARSDRTEKGCATCRIRNLCAGGCYHESYAHFSDPMMPTYHYCDLMRDWIDFGVAAYARLIAQAPQYFHQHVAPRRAFGK
SIO_010081: R2C4_RS20355
subclass of: SO_0000673
so part of: R2C4_RS20355
location: 5405..6829
location: region:5405-6829:1
so has part: feature:5405-6829:1:exon

WP_141892155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5405-6829:1:exon

R2C4_RS20360
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
gene: qhpC
locus tag: R2C4_RS20360
old locus tag: R2C4_20375
so part of: sequence
location: 6826..7149
location: region:6826-7149:1
so has part: feature:6826-7149:1:exon
subclass of: SO_0000010

position:6826:1
position: 6826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7149:1
position: 7149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6826-7149:1:exon

R2C4_RS20360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
gene: qhpC
locus tag: R2C4_RS20360
old locus tag: R2C4_20375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013653225.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quinohemoprotein amine dehydrogenase subunit gamma
translation: MKPLNQKAERVQQAAAQGQMEEVRAMQTVTAGCATTFDPGWEVDPFGGLAALCQPMEADLYGCSDPCWWPAQVPDIMVNHPNWDEGAPNAAKDWRALGATYPTDAET
SIO_010081: R2C4_RS20360
subclass of: SO_0000673
so part of: R2C4_RS20360
location: 6826..7149
location: region:6826-7149:1
so has part: feature:6826-7149:1:exon

WP_008558561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6826-7149:1:exon

R2C4_RS20365
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
gene: peaD
locus tag: R2C4_RS20365
old locus tag: R2C4_20380
so part of: sequence
location: 7163..8242
location: region:7163-8242:1
so has part: feature:7163-8242:1:exon
subclass of: SO_0000010

position:7163:1
position: 7163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8242:1
position: 8242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7163-8242:1:exon

R2C4_RS20365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
gene: peaD
locus tag: R2C4_RS20365
old locus tag: R2C4_20380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297901.1
GO component: GO:0042597 - periplasmic space [Evidence IEA]
GO function: GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO process: GO:0009310 - amine catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quinohemoprotein amine dehydrogenase subunit beta
translation: MKSALFAAAALCATALPLAAGDLLVTVARPSNLYVFDAQDRSVKADCDLGANVTPGVIAMSPDNRIAYVLLNHWQDVVGVDIETCEKVFHAAQSEGDVTRRSLASLAVSKDGSQIYTVRNPVRKKTDRYEVMQPEFAVYDAGAGLEAKPSATFEAPRRSTLMASDRNGQVYVAGHEIYRVDPSNGATEVAIANASWDRPTYSPPDVLAFWPTGSQNDEMLLMYTAAVFTDETQQEMADFVWGYQSVDLTTGETEIADFASFEVLMFSAVRSAVDPKHLYGVYTQLSKHNLETKELVKRVDLPHTYYVINVSSDGTEVYVAGTNDDIGIYDSETLERVGEIRIPSGGDMSVSTLHVVPQG
SIO_010081: R2C4_RS20365
subclass of: SO_0000673
so part of: R2C4_RS20365
location: 7163..8242
location: region:7163-8242:1
so has part: feature:7163-8242:1:exon

WP_141892156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7163-8242:1:exon

R2C4_RS20370
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20370
old locus tag: R2C4_20385
so part of: sequence
location: 8239..9981
location: region:8239-9981:1
so has part: feature:8239-9981:1:exon
subclass of: SO_0000010

position:8239:1
position: 8239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9981:1
position: 9981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8239-9981:1:exon

R2C4_RS20370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20370
old locus tag: R2C4_20385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558520.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSGPAAKLSPQPGGAAAARAWPRLPSRAGAALFTAATAAWLLPLLRPHRRRLAVLLLISFAAAALGLLPPYISKLVIDRGLMAGDAAQLVIWSLALFGIGLLATGTGALSNILHMRASVRMLARMRQRLLSRLAAKPAGWFASQRAGELLARVDGDAAEVQKFAFNAVLGGSSALIRLLGGSAMLMVLDWRLGLLTALLAPAELAFLIWARPRTERHAAMVRERQGLYAAGLSETLFGLPALQAARGTAWAERRSLRDHAGLSQRLIAQNLWGEFTRAVPVLLSALTRSAIFLAGGLMVIRGEWPLGSLIAFIAYMGFMTGPMQSLLGLWHAQARVKVAAARLDAVMQADGPARAAGFAPAGFALRLQGVTVSRGAAAPLGPLTLTIPEGARVALRGASGAGKTSLLAVLCGRARPLAGRVTLGGADLSLLGGAGLPERVAYAGQRPFTLRASLRDNLFQSRAFWARPEAEARVWEMLALFGLAERFRGAGGLDTMLGESGLTLSGGERQRLCLLRALLHPFDILILDEALSEVDPATAARILAHIDAAFPEATRILTAHGGAAAGGDFDMEIALTEAAA
SIO_010081: R2C4_RS20370
subclass of: SO_0000673
so part of: R2C4_RS20370
location: 8239..9981
location: region:8239-9981:1
so has part: feature:8239-9981:1:exon

WP_141892157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8239-9981:1:exon

R2C4_RS20375
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20375
old locus tag: R2C4_20390
so part of: sequence
location: 9978..10634
location: region:9978-10634:1
so has part: feature:9978-10634:1:exon
subclass of: SO_0000010

position:9978:1
position: 9978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10634:1
position: 10634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9978-10634:1:exon

R2C4_RS20375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20375
old locus tag: R2C4_20390
inference: COORDINATES: protein motif:HMM:NF012311.2
GO function: GO:0008236 - serine-type peptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S8 family serine peptidase
translation: MTRAPLIALIDGPLAAETPGLAARMDLCALHPRAAESPAALHASHMAAAIRANAPEARILGLSIFPGRLAASLATVAEALRRAAESEAAIVHCSFGQGEASPVLAQAVAEVLAAGKLLVASAPARGAPVYPAGCAGVFPVQGDARCTPGQWSLLDLPGARFGACPGSPGAPVRGASLAAAHFTGLLARASLEDGIEAMLQTPAFTGRERIGAGGAHAA
SIO_010081: R2C4_RS20375
subclass of: SO_0000673
so part of: R2C4_RS20375
location: 9978..10634
location: region:9978-10634:1
so has part: feature:9978-10634:1:exon

WP_141892158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9978-10634:1:exon

R2C4_RS20380
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20380
old locus tag: R2C4_20395
so part of: sequence
location: 10631..11623
location: region:10631-11623:1
so has part: feature:10631-11623:1:exon
subclass of: SO_0000010

position:10631:1
position: 10631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11623:1
position: 11623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10631-11623:1:exon

R2C4_RS20380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20380
old locus tag: R2C4_20395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297904.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MICFDSWNSTLRANCGHYYATPEREAGVWAGSFGLRRRSGVDVAEIRCPPARIERTRKGILRDDQEHFFLLHQLEGETGIQHAGRETLLQPGELLLLDSTRAAELRVSGRPAAFRSAHLPRALVLERRREMPAAGCKIAPPHPLHASLCGLLEGTGGEDSAGYIFDLVPLAFAAGARPGAGSLGSRRHRFRLVRETLELLSGDPGLTVDRLAARTGLSRRQLQREFQENGTTFTECLTRARLAAVAGKLRHAARQGARVPIAQIAYGAGFGDISHFNRTFRQQFGCSPRRFLSTCSLGGFLAQDANSLAPVPKTPPPGRGCLLRSNPADG
SIO_010081: R2C4_RS20380
subclass of: SO_0000673
so part of: R2C4_RS20380
location: 10631..11623
location: region:10631-11623:1
so has part: feature:10631-11623:1:exon

WP_141892159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10631-11623:1:exon

R2C4_RS20385
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20385
old locus tag: R2C4_20400
so part of: sequence
location: 11639..13042
location: region:11639-13042:1
so has part: feature:11639-13042:1:exon
subclass of: SO_0000010

position:11639:1
position: 11639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13042:1
position: 13042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11639-13042:1:exon

R2C4_RS20385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20385
old locus tag: R2C4_20400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019297905.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldehyde dehydrogenase family protein
translation: MDYGMLINGEQVSAERMIEVINPATEEVFARVPHASEAQMNAAVAAAKAAQKAWAETPMAERRAKVEALAAAIGEEADELARLITLEQGKPLPEAQGEVAWSQGYLAHTATLELPDRVIQDDAEFRIETRHKPLGVVAGIIAWNFPLLLCCWKIGPALMAGNAIVLKPAPTTPVAALKLGEICARIFPAGLVNIITDANDLGPKLTAHPDVAKIGFTGSSETGKRIMASAADTMKRVTLEMGGNDPAIVLPDVDVKAAAEKVYGGAFLNAGQVCLAVKRAYVHSDIYEAFCAELAALAEQAVVDDGMKQGTTIGPIQNKAQFDKIKGFLEDARACGKIIAGGTPKDGPGYFVPPTIVRDVTDGQKIVDEEQFGPVLPVIRFDDIDDVIARANASDYGLGGSVHSGDTAKATEIAGRIESGTIWVNQQLNIGPHIPMAGFKGSGLGVEQSVEGLAEYTQMQVINVARG
SIO_010081: R2C4_RS20385
subclass of: SO_0000673
so part of: R2C4_RS20385
location: 11639..13042
location: region:11639-13042:1
so has part: feature:11639-13042:1:exon

WP_141892160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11639-13042:1:exon

R2C4_RS20390
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS20390
old locus tag: R2C4_20405
pseudo: true
so part of: sequence
location: 13110..>14269
location: region:13110-14269:1
so has part: feature:13110-14269:1:exon
subclass of: SO_0000010

position:13110:1
position: 13110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13110-14269:1:exon

R2C4_RS20390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS20390
old locus tag: R2C4_20405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558581.1
note: frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: AMP-binding protein
SIO_010081: R2C4_RS20390
subclass of: SO_0000673
so part of: R2C4_RS20390
location: 13110..>14269
location: region:13110-14269:1
so has part: feature:13110-14269:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13110-14269:1:exon