Leisingera aquaemixtae strain R2C4 plasmid unnamed8.
type: Entry
definition: Leisingera aquaemixtae strain R2C4 plasmid unnamed8.
sequence version: NZ_CP041155.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP041155.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12141652
keyword: RefSeq
source: Leisingera aquaemixtae
organism: Leisingera aquaemixtae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP041155.1.\nBacteria and source DNA available from Sarah Glaven, 4555 Overlook\nAve SW, Washington, DC, 20375, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 70.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:39:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,246\nCDSs (total) :: 4,174\nGenes (coding) :: 4,133\nCDSs (with protein) :: 4,133\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 23 of 41\nPseudo Genes (incomplete) :: 22 of 41\nPseudo Genes (internal stop) :: 4 of 41\nPseudo Genes (multiple problems) :: 8 of 41\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 13809
topology: linear
so has quality: SO_0000987
location: 1..13809
location: region:1-13809:1
RO_0002162: 1396826

NZ_CP041155
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12141652
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leisingera sp. R2C4 Isolated from the Self-Regenerating Biocathode Consortium
author: Eddie, B.
author: Malanoski, A.
author: Bird, L.
author: Glaven, S.
journal: Unpublished

2
title: Direct Submission
author: Eddie, B.
author: Malanoski, A.
author: Bird, L.
author: Glaven, S.
journal: Submitted (18-JUN-2019) NCBI, Naval Research Lab DC, 4555 Overlook Ave SW, Washington, DC 20375, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:13809:1
position: 13809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-13809:1:source
so part of: sequence
organism: Leisingera aquaemixtae
mol type: genomic DNA
strain: R2C4
isolation source: Biocathode MCL, marine biofilm
plasmid: unnamed8
country: USA: Rutgers, NJ
collection date: 2009

1396826
type: Taxonomy
SIO_000068: taxonomy

R2C4_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00005
old locus tag: R2C4_00005
pseudo: true
so part of: sequence
location: <1..512
location: region:1-512:1
so has part: feature:1-512:1:exon
subclass of: SO_0000010

position:512:1
position: 512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-512:1:exon

R2C4_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00005
old locus tag: R2C4_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558518.1
note: frameshifted; incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: C4-dicarboxylate ABC transporter
SIO_010081: R2C4_RS00005
subclass of: SO_0000673
so part of: R2C4_RS00005
location: <1..512
location: region:1-512:1
so has part: feature:1-512:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-512:1:exon

R2C4_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00010
old locus tag: R2C4_00010
pseudo: true
so part of: sequence
location: 582..1681
location: region:582-1681:1
so has part: feature:582-1681:1:exon
subclass of: SO_0000010

position:582:1
position: 582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1681:1
position: 1681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:582-1681:1:exon

R2C4_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00010
old locus tag: R2C4_00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558559.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
SIO_010081: R2C4_RS00010
subclass of: SO_0000673
so part of: R2C4_RS00010
location: 582..1681
location: region:582-1681:1
so has part: feature:582-1681:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:582-1681:1:exon

R2C4_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00015
old locus tag: R2C4_00015
so part of: sequence
location: 1593..1967
location: region:1593-1967:1
so has part: feature:1593-1967:1:exon
subclass of: SO_0000010

position:1593:1
position: 1593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1967:1
position: 1967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1593-1967:1:exon

R2C4_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00015
old locus tag: R2C4_00015
inference: COORDINATES: protein motif:HMM:NF024900.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: (2Fe-2S)-binding protein
translation: MRCSCPTGWKAPRPPLIWRCSVKTDSPFLELADDAPRVRVWFDGQPLDLPAGANLAAALLAAGVQVFRHTAVSGAPRAPFCMMGACYECLVEIGGRVQQACMLEVEEGMKIARPFEAEAGDETL
SIO_010081: R2C4_RS00015
subclass of: SO_0000673
so part of: R2C4_RS00015
location: 1593..1967
location: region:1593-1967:1
so has part: feature:1593-1967:1:exon

WP_244940695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1593-1967:1:exon

R2C4_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00020
old locus tag: R2C4_00020
so part of: sequence
location: 1954..3348
location: region:1954-3348:1
so has part: feature:1954-3348:1:exon
subclass of: SO_0000010

position:1954:1
position: 1954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3348:1
position: 3348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1954-3348:1:exon

R2C4_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00020
old locus tag: R2C4_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558556.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MKRCDLAIIGAGPAGMAAAAEAARQGLSVTLLDEQNRPGGQIYREVDRAGGPRGAILGQEYLHGATLTAGLGQAGITHLSGAIVWAIEEGFRISFIRGGRGEQLEAARVILATGALERPMPLPGWTLPGVMTAGAAQILLKQSGVLPRRAVLAGCGPLLYLIAAQMVRAGTPPLALVETQTAASPLVASRHLPGALRGWRYLAKGLKMLAEIKRARVPRYTGATDIAVAGSTGAEAVTFRSKGQAHRIACDTVLLHHGVVPNTQAARSINVPHVWSEAQQCFVPETGPWGETGKDGVLIAGDGAGISGAMAAEYAGRIAALKAAEELGRITAQERDRLAAPLISRRSRETAVRPFLDAAYPPYASALRPADSTIVCRCEEVTAGDIRSYAKLGCLGPNQAKAFGRAGMGPCQGRYCGLTVTALLAEANGQTPDETGYYRIRPPIKPVTLGELAAMEDPSATAAE
SIO_010081: R2C4_RS00020
subclass of: SO_0000673
so part of: R2C4_RS00020
location: 1954..3348
location: region:1954-3348:1
so has part: feature:1954-3348:1:exon

WP_141889042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1954-3348:1:exon

R2C4_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00025
old locus tag: R2C4_00025
so part of: sequence
location: 3358..3696
location: region:3358-3696:1
so has part: feature:3358-3696:1:exon
subclass of: SO_0000010

position:3358:1
position: 3358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3696:1
position: 3696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3358-3696:1:exon

R2C4_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00025
old locus tag: R2C4_00025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558530.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RidA family protein
translation: MIERIETGPRMSKIVKHNGVAYLCGQVGDGADVAEQTRDCLSRVEALLEKAGSSPQQILQAIVWLADMKDFAEMNAVWDAWVPQGHAPARACGEARLARPDLKVEIIVTAAC
SIO_010081: R2C4_RS00025
subclass of: SO_0000673
so part of: R2C4_RS00025
location: 3358..3696
location: region:3358-3696:1
so has part: feature:3358-3696:1:exon

WP_008558530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3358-3696:1:exon

R2C4_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00030
old locus tag: R2C4_00030
so part of: sequence
location: 3805..4812
location: region:3805-4812:1
so has part: feature:3805-4812:1:exon
subclass of: SO_0000010

position:3805:1
position: 3805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4812:1
position: 4812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3805-4812:1:exon

R2C4_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00030
old locus tag: R2C4_00030
inference: COORDINATES: protein motif:HMM:NF021466.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2183 domain-containing protein
translation: MFKHALHRTALHAENLLDRLLPRKVRSGADLVIDPYIGYATPEALIVRGRVLTQLRHSAPRAGQGVLRNVRQMISLFLTDEAAGITVCHGDATAVSDEEGYYQLPLPPGRAPGWHEIPVAVADSKAQTVCPVLIPRPDARFLVISDIDDTVLQTSAYSLVRNLWTTFSGNALTRHVFPDSAALLRKLSQQGRNPVFYVSSSPWNMHAFLDQVFRQADMVRGPMFLRDLGLSETQFISAGHGSHKGQSIDLLLNAHPELPAILMGDTGQKDASIYGAAVRRHPGRIAAVLLRVPADGLSADDERDLAKLRETGITVVAAPSFDGAAQQLETITAGV
SIO_010081: R2C4_RS00030
subclass of: SO_0000673
so part of: R2C4_RS00030
location: 3805..4812
location: region:3805-4812:1
so has part: feature:3805-4812:1:exon

WP_141889043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3805-4812:1:exon

R2C4_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00035
old locus tag: R2C4_00035
so part of: sequence
location: complement(4850..5713)
location: region:4850-5713:-1
so has part: feature:4850-5713:-1:exon
subclass of: SO_0000010

position:4850:-1
position: 4850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5713:-1
position: 5713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4850-5713:-1:exon

R2C4_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00035
old locus tag: R2C4_00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013960084.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: formate/nitrite transporter family protein
translation: MTPTDKHLLAEEQKERDAVEEATGLSAKLIFETIRLEGEEELRRPMRALWWSGLAAGLLISFSVWGEAILRSSLPDGDWRFIVENLGYSLGFVLVILGRMQLFTENTITTVVPVTLCPTWKSFGRTGRLWAVVLAANVTGAFIAAAFLAFTPVMSGPMADAMLALSHHATGMPWAEGLVRGIPAGVLIAALVWMLPQANGSALPLIILITWLIALGDFTHIIAGSVEMAFLMVQGELSLAPAVFRFFLPVLAGNVIGGTAVFTLLTWAQIRPEVEEAKEKRNGRLKT
SIO_010081: R2C4_RS00035
subclass of: SO_0000673
so part of: R2C4_RS00035
location: complement(4850..5713)
location: region:4850-5713:-1
so has part: feature:4850-5713:-1:exon

WP_141889044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4850-5713:-1:exon

R2C4_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00040
old locus tag: R2C4_00040
so part of: sequence
location: complement(5924..7288)
location: region:5924-7288:-1
so has part: feature:5924-7288:-1:exon
subclass of: SO_0000010

position:5924:-1
position: 5924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7288:-1
position: 7288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5924-7288:-1:exon

R2C4_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00040
old locus tag: R2C4_00040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014881683.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO process: GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MATE family efflux transporter
translation: MARSDLTEGPVWRALARVSAPMSLGILAVLSIGLADAYFLGQLGGAPLAAVGFIYPVTTALASLAIGLSAGANAAVSQALGREDEDSAVARMSLHAAGLGLLLSVLVALAFYALHGQIFSLMGARGKVMAEISAYVPLWALSFPFLVLMMLVNALFRAHGNAVHASLFMILAAAVNIALNPLFIFGWGPVPAMETGGAALATLAGRLAAAAGAIAFAVHAGYLQLCGRIWQDLWRSLREITQVGAPAAFSNAINPAGMALVTAAVATLGDAAVAGFGAATRVQSLAIVVLLALSAGIGPVVGQNWGAGKETRAQSAVVQAWAFCLVYGLALGAVLSLCGGWIAAAIAEDAEAADYTRRYLQVVGWSLFGYGILVTANAAMNARSKALHSMGLSLGRITLIYVPLAWLGVWTFGYGGILAAAVAANLGAVAGAVWAARRTGLWPQSTRITRHITA
SIO_010081: R2C4_RS00040
subclass of: SO_0000673
so part of: R2C4_RS00040
location: complement(5924..7288)
location: region:5924-7288:-1
so has part: feature:5924-7288:-1:exon

WP_141889045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5924-7288:-1:exon

R2C4_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00045
old locus tag: R2C4_00045
so part of: sequence
location: complement(7466..8353)
location: region:7466-8353:-1
so has part: feature:7466-8353:-1:exon
subclass of: SO_0000010

position:7466:-1
position: 7466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8353:-1
position: 8353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7466-8353:-1:exon

R2C4_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00045
old locus tag: R2C4_00045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558540.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0004340 - glucokinase activity [Evidence IEA]; GO:0005536 - glucose binding [Evidence IEA]
GO process: GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucokinase
translation: MTRLRLAADAGGTNTRLGLARDGVLLADTVQSFRNDAHSGFAEVMDQYLQNAAPGGVAEVVIAIAGPVTGTTARLTNRDWHFDAAALSRHLNGARVHLLNDLAALGQACPHLGADCLDTVIAPADDAGGDGQRLVAGIGTGFNLSPVLHAGGRVQCLNVEYGHVSLPLDVAEHLSSRTGDAGAFRTVEHLFSGRGYAAVRAQFPEDTAGTQAFQGFYAELLSLLARNLVLAFLPAQGIYFAGAVARSLLASPARQVFAEAFRQPFALDTGIEAPVYVILDDAAALKGCAAVTVNR
SIO_010081: R2C4_RS00045
subclass of: SO_0000673
so part of: R2C4_RS00045
location: complement(7466..8353)
location: region:7466-8353:-1
so has part: feature:7466-8353:-1:exon

WP_141889046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7466-8353:-1:exon

R2C4_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
gene: ugpC
locus tag: R2C4_RS00050
old locus tag: R2C4_00050
so part of: sequence
location: complement(8350..9447)
location: region:8350-9447:-1
so has part: feature:8350-9447:-1:exon
subclass of: SO_0000010

position:8350:-1
position: 8350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9447:-1
position: 9447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8350-9447:-1:exon

R2C4_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
gene: ugpC
locus tag: R2C4_RS00050
old locus tag: R2C4_00050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296494.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
translation: MAPILDITNLRKNYGATEILKDINVSIEPGDFLVLVGPSGCGKSTLLNCIAGLEPISGGRIEIGGRDMTQVSPKDRDIAMVFQSYALYPTMTVAKNITFGMKVRGADAATQARKLKEVAAQLQIEALLDRRPGQLSGGQRQRVAMGRALVRDPKLFLFDEPLSNLDAKLRVEMRTEIKKLHHNLGATMVYVTHDQIEAMTLATKIVVMKGGVVQQIGTPAEIYNKPANLFVADFMGSPAMNLIPARAQPNGQGTRIEMDCGGSAPIVLKDSRATGLPQDVILGVRPEDIAEAGFRAGEGVQEAACLIDMVEPAGADTYVVSQLGGKQVTARLHAETRAQPGQMLDLAFDLSKVSYFSPATGERLN
SIO_010081: R2C4_RS00050
subclass of: SO_0000673
so part of: R2C4_RS00050
location: complement(8350..9447)
location: region:8350-9447:-1
so has part: feature:8350-9447:-1:exon

WP_141889047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8350-9447:-1:exon

R2C4_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00055
old locus tag: R2C4_00055
so part of: sequence
location: complement(9452..10348)
location: region:9452-10348:-1
so has part: feature:9452-10348:-1:exon
subclass of: SO_0000010

position:9452:-1
position: 9452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10348:-1
position: 10348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9452-10348:-1:exon

R2C4_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00055
old locus tag: R2C4_00055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296495.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbohydrate ABC transporter permease
translation: MTDATLAPARAPAQNWSRIALRWLLFTLLGLFALFYLMPLFVMITTSLKSLEEIRTGSLIAFPREVTFDAWRTAWSEACTGIQCEGLRPFFWNSVVIAVPAVAISTMLGAANGYVIAQWRFKGANLIFSLMLFGCFIPFQVVLLPMARMLGLMGLAGSIPGLIFVHVIYGIGFTTLFFRNFYVTIPQDLVKAAKVDGAGFFRIFWSIFLPLSLPIIVVTVIWQFTQIWNDFLFGVSFSQAGTQPVTVALNNIVNSTTGVKEYNVDMAAAIIAALPTLLVYAVAGKYFIRGLTAGSVKG
SIO_010081: R2C4_RS00055
subclass of: SO_0000673
so part of: R2C4_RS00055
location: complement(9452..10348)
location: region:9452-10348:-1
so has part: feature:9452-10348:-1:exon

WP_008558552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9452-10348:-1:exon

R2C4_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00060
old locus tag: R2C4_00060
so part of: sequence
location: complement(10341..11213)
location: region:10341-11213:-1
so has part: feature:10341-11213:-1:exon
subclass of: SO_0000010

position:10341:-1
position: 10341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11213:-1
position: 11213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10341-11213:-1:exon

R2C4_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00060
old locus tag: R2C4_00060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008757155.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar ABC transporter permease
translation: MSQWLERHIPKMVLAPSFAAVLVFVYGFIIWTAWVSLTRSRLLPKYEIEGLIQYERLFNAPRWDTAMSNLFVFGTLFILISMLLGLMLAILLDQKIRTEGVLRTIYLYPMALSLIVTGTAWKWIMNPGLGIEAMVRGWGFESFTFDWVINPDKAIYAVVIAGVWQASGFVMALFLAGLRGVDGEIIKAAQVDGIPAWRIYTAIIIPSMAPIFLSAFIVLAHLAIKSFDLVIALTGGGPGYATDLPATYMYTMAFSRGDIGQAASSAMVMMAVVFAIIVPYLYSELRAKHD
SIO_010081: R2C4_RS00060
subclass of: SO_0000673
so part of: R2C4_RS00060
location: complement(10341..11213)
location: region:10341-11213:-1
so has part: feature:10341-11213:-1:exon

WP_141889048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10341-11213:-1:exon

R2C4_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00065
old locus tag: R2C4_00065
so part of: sequence
location: complement(11273..12517)
location: region:11273-12517:-1
so has part: feature:11273-12517:-1:exon
subclass of: SO_0000010

position:11273:-1
position: 11273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12517:-1
position: 12517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11273-12517:-1:exon

R2C4_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00065
old locus tag: R2C4_00065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558516.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MKRTAFAAVSAVALACAAPAVAGPQAEVLHWWTSGGEAKSAAVLQQEFADNGGTWTDMPVAGGGGDAAMTALRARVLSGNAPTAVQLKGPAIQEWYEEGVLADISSVAEAEGWADVLPGSIAEHMKCEGKWCAAPVNVHRVDWIWANAAVLEASGIEMPTTWEEFNAAADKLLAAGVTPLAHGGQAWQDATVFEAVALGILGPEDFRKAFVDLDMETLKSSKMVAVFDQMRKMRGYVDANFPGRDWNLATAMVMNGEAAFQIMGDWAKGEFLAAGKEPGKDFLCASVPGDGFLYNVDSFAMFEVDGEDKQAGQDLLAKLIVGPKFQEVFNLNKGSIPARVDVKLDAFDSCAHLSAKDMGESAENGSLLPSYAHGMALRGAQAGAITDVVTAHFNSDMSSDEAVQMLADAVANSM
SIO_010081: R2C4_RS00065
subclass of: SO_0000673
so part of: R2C4_RS00065
location: complement(11273..12517)
location: region:11273-12517:-1
so has part: feature:11273-12517:-1:exon

WP_141889049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11273-12517:-1:exon

R2C4_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00070
old locus tag: R2C4_00070
so part of: sequence
location: 12746..13480
location: region:12746-13480:1
so has part: feature:12746-13480:1:exon
subclass of: SO_0000010

position:12746:1
position: 12746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13480:1
position: 13480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12746-13480:1:exon

R2C4_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00070
old locus tag: R2C4_00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558602.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MAIPRLLVVDDDTETRMMLTQYLRQNGFIALPCASEADIRAQIGAGRIDLILLDVMLGDENGVEICTRLRAGQDVPIILVSALSADHQRMAGYESGADDYIAKPFNPDLLLARVRAVLQRARRSSSLIYRRSVATFRFAGWTYDAKRDEVISPAGVQVALSRRETGLLKVFLANPHIPLTREEIAAALDVTGEGGSDEGSGRAIDVLVGRLRSKIEQTPKEPKLLRTERGTGYVLAVDVETGGD
SIO_010081: R2C4_RS00070
subclass of: SO_0000673
so part of: R2C4_RS00070
location: 12746..13480
location: region:12746-13480:1
so has part: feature:12746-13480:1:exon

WP_141889050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12746-13480:1:exon

R2C4_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 1396826
locus tag: R2C4_RS00075
old locus tag: R2C4_00075
pseudo: true
so part of: sequence
location: 13486..>13809
location: region:13486-13809:1
so has part: feature:13486-13809:1:exon
subclass of: SO_0000010

position:13486:1
position: 13486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13486-13809:1:exon

R2C4_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1396826
locus tag: R2C4_RS00075
old locus tag: R2C4_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008558576.1
note: incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: sensor histidine kinase
SIO_010081: R2C4_RS00075
subclass of: SO_0000673
so part of: R2C4_RS00075
location: 13486..>13809
location: region:13486-13809:1
so has part: feature:13486-13809:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13486-13809:1:exon