Fenneropenaeus chinensis mitochondrion, complete genome.
type: Entry
definition: Fenneropenaeus chinensis mitochondrion, complete genome.
sequence version: NC_009679.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_009679.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Penaeus chinensis (fleshy prawn)
organism: Penaeus chinensis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus.
reference: 1
references: 17890021
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from DQ518969.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16004
topology: circular
so has quality: SO_0000988
location: 1..16004
location: region:1-16004:1
RO_0002162: 139456

NC_009679
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations
author: Shen, X.
author: Ren, J.
author: Cui, Z.
author: Sha, Z.
author: Wang, B.
author: Xiang, J.
author: Liu, B.
journal: Gene 403 (1-2), 98-109 (2007)
pubmed: 17890021

17890021
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Shen, X.
author: Ren, J.
author: Liu, B.
author: Wang, B.
author: Xiang, J.
journal: Submitted (27-APR-2006) Institute of Oceanology, Chinese Academy of Sciences, Shangdong Qingdao Nanhai Road 7#, Qingdao, Shandong 266071, China

3
title: Direct Submission
journal: Submitted (26-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:16004:1
position: 16004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16004:1:source
so part of: sequence
organism: Penaeus chinensis
organelle: mitochondrion
mol type: genomic DNA
common: fleshy prawn

139456
type: Taxonomy
SIO_000068: taxonomy

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: COX1
so part of: sequence
location: <1..1534
location: region:1-1534:1
so has part: feature:1-1534:1:exon
subclass of: SO_0000010

5333400
type: Gene
SIO_000068: ncbigene

position:1534:1
position: 1534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1534:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: COX1
note: start codon not determined; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:1534,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit I
translation: TQRWLFSTNHKDIGTLYFIFGAWAGMVGTALSLIIRAELGQPGSLIGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSGMVESGVGTGWTVYPPLSASIAHAGASVDLGIFSLHLAGVSSILGAVNFMTTVINMRSTGMTMDRMPLFVWAVFITALLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPVLYQHLFWFFGHPEVYILILPAFGMISHIISQESGKKEAFGTLGMIYAMLAIGVLGFVVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWMGTLHGTQLNYSPSLIWALGFVFLFTVGGLTGVVLANSSIDIILHDTYYVVAHFHYVLSMGAVFGIFAGIAHWFPLFTGLTLNPKWLKVHFLVMFIGVNITFFPQHFLGLNGMPRRYSDYPDAYTAWNVVSSIGSTVSLIAVLGFVMIVWEALTVARPVMFSLFLPTSIEWQHNLPPADHSYMEIPLITN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: <1..1534
location: region:1-1534:1
so has part: feature:1-1534:1:exon

YP_001382108.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1534:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 1535..1600
location: region:1535-1600:1
so has part: feature:1535-1600:1:region

position:1535:1
position: 1535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1600:1
position: 1600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1535-1600:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: COX2
so part of: sequence
location: 1606..2293
location: region:1606-2293:1
so has part: feature:1606-2293:1:exon
subclass of: SO_0000010

5333403
type: Gene
SIO_000068: ncbigene

position:1606:1
position: 1606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2293:1
position: 2293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1606-2293:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:2293,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit II
translation: MPTWGHLGLQDSASPLMEQLIFFHDHAMVVLILITTLVGYMLSTLFFNTFTNRFLLEGQTIEIVWTVLPALILVFIALPSLRLLYLLDEVNNPSVTLKTIGHQWYWSYEYSDFLQVEFDSYMIPSNELAEDGFRLLDVDNRTVLPMNTQIRVLISAADVIHSWTVPALGVKADAIPGRLNQVSFLMNRPGLFYGQCSEICGANHSFMPIVVESVSVNSFLNWISSASDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 1606..2293
location: region:1606-2293:1
so has part: feature:1606-2293:1:exon

YP_001382109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1606-2293:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Lys
so part of: sequence
location: 2294..2361
location: region:2294-2361:1
so has part: feature:2294-2361:1:region

position:2294:1
position: 2294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2361:1
position: 2361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2294-2361:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Asp
so part of: sequence
location: 2365..2434
location: region:2365-2434:1
so has part: feature:2365-2434:1:region

position:2365:1
position: 2365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2434:1
position: 2434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2365-2434:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ATP8
so part of: sequence
location: 2435..2593
location: region:2435-2593:1
so has part: feature:2435-2593:1:exon
subclass of: SO_0000010

5333409
type: Gene
SIO_000068: ncbigene

position:2435:1
position: 2435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2593:1
position: 2593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2435-2593:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ATP8
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 8
translation: MPQMAPLLWLNLFIMFSATFIMFIILNYFIKVPSKIEAPSTQLQKTEMNWKW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 2435..2593
location: region:2435-2593:1
so has part: feature:2435-2593:1:exon

YP_001382110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2435-2593:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ATP6
so part of: sequence
location: 2587..3261
location: region:2587-3261:1
so has part: feature:2587-3261:1:exon
subclass of: SO_0000010

5333410
type: Gene
SIO_000068: ncbigene

position:2587:1
position: 2587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3261:1
position: 3261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2587-3261:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ATP6
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 6
translation: MMTNLFSVFDPTSSLLSLPLNWLSTFLGIMFLPTLYWIMPSRWSLLWSLVTKTLHNEFKMLLGASHTGTTLTFVSLFSLIVFNNFLGLLPYVFTSTSHLTMTLALALPLWLAFMMFGWINHTQHMFAHLVPQGTPGALMPFMVLIETISNIIRPGTLAVRLAANMIAGHLLLTLLGSTGPSLSTTLVSMLIIGQILLLILEAAVAVIQSYVFAVLSTLYASEVT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 2587..3261
location: region:2587-3261:1
so has part: feature:2587-3261:1:exon

YP_001382111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2587-3261:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: COX3
so part of: sequence
location: 3271..4060
location: region:3271-4060:1
so has part: feature:3271-4060:1:exon
subclass of: SO_0000010

5333407
type: Gene
SIO_000068: ncbigene

position:3271:1
position: 3271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4060:1
position: 4060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3271-4060:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4060,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit III
translation: MTSSHGHHAFHLVDMSPWPLTGSISAMMLTTGLVKWFHQFNPDLLVLGVVATTLTMIQWWRDITREGTYQGLHTKAVTIGLRWGMILFITSEVLFFFSFFWAFFHSSLSPNVEVGSCWPPAGIQTFNPFQIPLLNTAILLASGATVTWAHHAIMEANYTQSVQGLSITVILGMYFTALQALEYYEAPFTIADSVYGSTFFVATGFHGLHVIIGSTFLSVCLYRLYKCHFSSSHHFGFEAAAWYWHFVDVVWLFLYISIYWWGG
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 3271..4060
location: region:3271-4060:1
so has part: feature:3271-4060:1:exon

YP_001382112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3271-4060:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Gly
so part of: sequence
location: 4061..4126
location: region:4061-4126:1
so has part: feature:4061-4126:1:region

position:4061:1
position: 4061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4126:1
position: 4126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4061-4126:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND3
so part of: sequence
location: 4127..4478
location: region:4127-4478:1
so has part: feature:4127-4478:1:exon
subclass of: SO_0000010

5333408
type: Gene
SIO_000068: ncbigene

position:4127:1
position: 4127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4478:1
position: 4478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4127-4478:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4478,aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 3
translation: MIILLISILITLIISVVVMVLASLLAKKTITDREKNSPFECGFDPKGSARLPFSLRFFLIAVIFLIFDVEITLLLPLAIIMNFSNISAWAFTGFAFILILLIGLYHEWNQGALEWAY
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 4127..4478
location: region:4127-4478:1
so has part: feature:4127-4478:1:exon

YP_001382113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4127-4478:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Ala
so part of: sequence
location: 4479..4543
location: region:4479-4543:1
so has part: feature:4479-4543:1:region

position:4479:1
position: 4479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4543:1
position: 4543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4479-4543:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Arg
so part of: sequence
location: 4546..4610
location: region:4546-4610:1
so has part: feature:4546-4610:1:region

position:4546:1
position: 4546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4610:1
position: 4610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4546-4610:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Asn
so part of: sequence
location: 4612..4681
location: region:4612-4681:1
so has part: feature:4612-4681:1:region

position:4612:1
position: 4612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4681:1
position: 4681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4612-4681:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Ser
codon recognized: AGN
so part of: sequence
location: 4685..4751
location: region:4685-4751:1
so has part: feature:4685-4751:1:region

position:4685:1
position: 4685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4751:1
position: 4751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4685-4751:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Glu
so part of: sequence
location: 4752..4821
location: region:4752-4821:1
so has part: feature:4752-4821:1:region

position:4752:1
position: 4752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4821:1
position: 4821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4752-4821:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Phe
so part of: sequence
location: complement(4841..4908)
location: region:4841-4908:-1
so has part: feature:4841-4908:-1:region

position:4841:-1
position: 4841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4908:-1
position: 4908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4841-4908:-1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND5
so part of: sequence
location: complement(4909..6631)
location: region:4909-6631:-1
so has part: feature:4909-6631:-1:exon
subclass of: SO_0000010

5333401
type: Gene
SIO_000068: ncbigene

position:4909:-1
position: 4909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6631:-1
position: 6631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4909-6631:-1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND5
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(4909),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 5
translation: MVSMYLSSMLFLLSGSLSCLFFSLMCLKSGQAWFIEWELLSLNSSSVVMTLILDWMSFMFLGFVMFISSMVLYYSGEYMAGDNNMNRFMYLVLAFVMSMGFLIISPNLISILLGWDGLGLVSYALVIYYQNEKSANAGMLTALSNRVGDVAILLAISLFFSLGGWNFLFYVDNLPSMNMNGLLCGLVVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFSPALEGRLSQSVLLLLSSLTMFMAGLGANFEYDLKKIIALSTLSQLGVMMSILSLGYADLAFFHLLAHALFKALLFMCAGAVIHSVKDYQDIRMMGGLVYHMPLTGMCMNLANLALCGTPFLAGFYSKDMILEVAFMSPINMISFLLYALATGLTVCYTMRLVYYTLSGDFNLGNLYSINDEGKIMTNPMIGLSVGAVFGGASLAWLIFPCPYMICMSPFFKMLALIVSVIGGVIGYMLNLNAVNYQLNSLNSYELVVFGGSMWFMPFLSTYGLSKGFLKSGETYQKVGDMGWSEFYGGQGTYSFIMTSSKSLQTLQDNSMKVYMLSFLLWLIVLLFIVI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: complement(4909..6631)
location: region:4909-6631:-1
so has part: feature:4909-6631:-1:exon

YP_001382114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4909-6631:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-His
so part of: sequence
location: complement(6641..6707)
location: region:6641-6707:-1
so has part: feature:6641-6707:-1:region

position:6641:-1
position: 6641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6707:-1
position: 6707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6641-6707:-1:region

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND4
so part of: sequence
location: complement(6708..8048)
location: region:6708-8048:-1
so has part: feature:6708-8048:-1:exon
subclass of: SO_0000010

5333411
type: Gene
SIO_000068: ncbigene

position:6708:-1
position: 6708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8048:-1
position: 8048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6708-8048:-1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND4
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4
translation: MLKFLLACVMLMPLVNSWWAVQSSLFVLSFIMIIYCHHDFGNYMMGWCFNLDSLGYILILLSFWITSLVVCSSQKVLKDNNYPSLFLVVNIFLLFFLVMTFSVNDYLLFYISFESSLIPTLILILGWGYQPERLQAGVYMLFYTLFASLPLLVSLISLYNMSGSLTLGLVESVKGVGFIPCVWYVVTVFAFIVKLPMFLVHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLIRVLPLFSEVNKSLSWLWVSISLVGGVVVSLMCLRQVDMKALIAYSSVAHMGLVLSGLVVFGWWGLNGAVVVMIGHGLCSSGLFCLANMVYERVGSRSLLISKGLINFMPSMALWWFLLSAGNMAAPPTLNLLGEISLIISVVSWSKVTMLSIALLSFFSAAYTLYMFSLSQHGKYYSSLFSCCSGKVREYLILMLHWLPLNVLILKSSTIMCIL
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: complement(6708..8048)
location: region:6708-8048:-1
so has part: feature:6708-8048:-1:exon

YP_001382115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6708-8048:-1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND4L
so part of: sequence
location: complement(8042..8341)
location: region:8042-8341:-1
so has part: feature:8042-8341:-1:exon
subclass of: SO_0000010

5333405
type: Gene
SIO_000068: ncbigene

position:8042:-1
position: 8042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8341:-1
position: 8341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8042-8341:-1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND4L
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4L
translation: MLILNFYYIVPVVSVLCGLWVFVSKRKHLLNTLLSLEYIMLSIFWIMSLHLSNMGHESYFVLFFLTLAACEGALGLALLVSVVRTHGNDCFSSFSVLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: complement(8042..8341)
location: region:8042-8341:-1
so has part: feature:8042-8341:-1:exon

YP_001382116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8042-8341:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Thr
so part of: sequence
location: 8344..8411
location: region:8344-8411:1
so has part: feature:8344-8411:1:region

position:8344:1
position: 8344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8411:1
position: 8411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8344-8411:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Pro
so part of: sequence
location: complement(8412..8478)
location: region:8412-8478:-1
so has part: feature:8412-8478:-1:region

position:8412:-1
position: 8412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8478:-1
position: 8478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8412-8478:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND6
so part of: sequence
location: 8480..8995
location: region:8480-8995:1
so has part: feature:8480-8995:1:exon
subclass of: SO_0000010

5333399
type: Gene
SIO_000068: ncbigene

position:8480:1
position: 8480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8995:1
position: 8995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8480-8995:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND6
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 6
translation: MSLIITLSPMIIISSLIFTRLFHPLAMGLMLLFQTIMICVTAGLSMNSFWFSYILFLIFLGAMLVLFIYVASLASNESFSFSTSLMMVSAFVLLASFMMIFLDPLLLNTPISIQQSSLPNDQFSSTQSLLSSIYNYTTMNLTLFIVMYLLLTLIVVVKITNTFFGPLRLSS
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 8480..8995
location: region:8480-8995:1
so has part: feature:8480-8995:1:exon

YP_001382117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8480-8995:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: CYTB
so part of: sequence
location: 8999..10135
location: region:8999-10135:1
so has part: feature:8999-10135:1:exon
subclass of: SO_0000010

5333402
type: Gene
SIO_000068: ncbigene

position:8999:1
position: 8999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10135:1
position: 10135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8999-10135:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: CYTB
codon start: 1
transl table: 5
product: cytochrome b
translation: MTMPIRKSHPLFKILNGAIVDLPAPANISTLWNFGSLLGLCLVIQIVTGLFLAMHYTAHVDLAFSSVAHICRDVNYGWLLRTLHANGASFFFICLYMHTGRGIYYGSFLYLHAWSVGVVILLLVMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGTDLVQWIWGGFAVDNATLTRFFTFHFLFPFIVAAATIIHILFIHQTGSNNPLGIVSNVDKVPFHPYFTFKDITGFIVMLAALILLTLLNPYLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILLILPFTHAAKFRSLAFYPLNQLMFWSLVSIVFLLTWIGARPVEDPYVLTGQILTVLYFSYYIINPLTLIWWDKMLD
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 8999..10135
location: region:8999-10135:1
so has part: feature:8999-10135:1:exon

YP_001382118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8999-10135:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: 10137..10210
location: region:10137-10210:1
so has part: feature:10137-10210:1:region

position:10137:1
position: 10137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10210:1
position: 10210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10137-10210:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND1
so part of: sequence
location: complement(10228..11166)
location: region:10228-11166:-1
so has part: feature:10228-11166:-1:exon
subclass of: SO_0000010

5333406
type: Gene
SIO_000068: ncbigene

position:10228:-1
position: 10228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11166:-1
position: 11166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10228-11166:-1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND1
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 1
translation: MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWSSNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLSLFSLYQRDVWLLWFTFPLSLIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIFLGGNLVSPFYYVKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKAACFICML
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: complement(10228..11166)
location: region:10228-11166:-1
so has part: feature:10228-11166:-1:exon

YP_001382119.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10228-11166:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: complement(11172..11238)
location: region:11172-11238:-1
so has part: feature:11172-11238:-1:region

position:11172:-1
position: 11172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11238:-1
position: 11238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11172-11238:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 139456
product: l-rRNA
so part of: sequence
location: complement(11239..12605)
location: region:11239-12605:-1
so has part: feature:11239-12605:-1:region

position:11239:-1
position: 11239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12605:-1
position: 12605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11239-12605:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Val
so part of: sequence
location: complement(12609..12680)
location: region:12609-12680:-1
so has part: feature:12609-12680:-1:region

position:12609:-1
position: 12609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12680:-1
position: 12680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12609-12680:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 139456
product: s-rRNA
so part of: sequence
location: complement(12681..13532)
location: region:12681-13532:-1
so has part: feature:12681-13532:-1:region

position:12681:-1
position: 12681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13532:-1
position: 13532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12681-13532:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Ile
so part of: sequence
location: 14530..14601
location: region:14530-14601:1
so has part: feature:14530-14601:1:region

position:14530:1
position: 14530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14601:1
position: 14601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14530-14601:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Gln
so part of: sequence
location: complement(14609..14678)
location: region:14609-14678:-1
so has part: feature:14609-14678:-1:region

position:14609:-1
position: 14609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14678:-1
position: 14678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14609-14678:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Met
so part of: sequence
location: 14710..14777
location: region:14710-14777:1
so has part: feature:14710-14777:1:region

position:14710:1
position: 14710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14777:1
position: 14777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14710-14777:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 139456
gene: ND2
so part of: sequence
location: 14778..15777
location: region:14778-15777:1
so has part: feature:14778-15777:1:exon
subclass of: SO_0000010

5333404
type: Gene
SIO_000068: ncbigene

position:14778:1
position: 14778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15777:1
position: 15777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14778-15777:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139456
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15777,aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 2
translation: MLLSSSQMLFFSTLSLGTLLSISSSSWFGAWIGLELNLLSFIPLISSKNNQYSSEAALKYFLIQALGSSIIVMSASFTMSFNELSTLLFTAALLLKSGAAPFHFWFPSVMEGLQWPQVIILMTIQKIAPLSLLSYVLYSPSLPIIPAAIITSALVGAIGGINQTFLRKILAYSSINHMAWMMSAILISETNWLIYFSFYCLISTSIAILFNYQEAFHISHILNHSSHSSQMKMLTFSSLLSLGGLPPFTGFIPKWLIIQEMISTHMFITLGILLASALLTLFYYLRIAMTAFTISSPKTKWSVKLVAKSYLTPYMLYFNMFGLLAPSLFMIIL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 14778..15777
location: region:14778-15777:1
so has part: feature:14778-15777:1:exon

YP_001382120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14778-15777:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Trp
so part of: sequence
location: 15778..15846
location: region:15778-15846:1
so has part: feature:15778-15846:1:region

position:15778:1
position: 15778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15846:1
position: 15846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15778-15846:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Cys
so part of: sequence
location: complement(15866..15935)
location: region:15866-15935:-1
so has part: feature:15866-15935:-1:region

position:15866:-1
position: 15866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15935:-1
position: 15935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15866-15935:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 139456
product: tRNA-Tyr
so part of: sequence
location: complement(15937..16001)
location: region:15937-16001:-1
so has part: feature:15937-16001:-1:region

position:15937:-1
position: 15937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16001:-1
position: 16001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15937-16001:-1:region