Dietzia psychralcaliphila strain ILA-1 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Dietziaceae; Dietzia.
Complete genome sequence of the haloalkaliphilic hydrocarbon-degrading bacterium Dietzia psychralcaliphila ILA-1T, isolated from a drain of a fish product-processing plant
Submitted (27-APR-2016) College of Engineering, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing, Beijing 100871, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP015454.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP Assembley 3 in SMRT analysis v. 2.3\nGenome Coverage :: 169.96x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:25:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,651\nCDSs (total) :: 3,591\nGenes (coding) :: 3,567\nCDSs (with protein) :: 3,567\nGenes (RNA) :: 60\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 9 of 24\nPseudo Genes (incomplete) :: 17 of 24\nPseudo Genes (internal stop) :: 2 of 24\nPseudo Genes (multiple problems) :: 4 of 24\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Dietzia psychralcaliphila
COORDINATES: similar to AA sequence:RefSeq:WP_017835892.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010540264.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013809079.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003977840.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937932.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039733.1
COORDINATES: protein motif:HMM:NF019886.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017836485.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017836486.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553233.1
COORDINATES: similar to AA sequence:RefSeq:WP_017835885.1
COORDINATES: similar to AA sequence:RefSeq:WP_017835886.1
COORDINATES: similar to AA sequence:RefSeq:WP_017835889.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_017835891.1