Dietzia psychralcaliphila strain ILA-1 plasmid unnamed, complete sequence.
type: Entry
definition: Dietzia psychralcaliphila strain ILA-1 plasmid unnamed, complete sequence.
sequence version: NZ_CP015454.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP015454.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04880516
keyword: RefSeq
source: Dietzia psychralcaliphila
organism: Dietzia psychralcaliphila
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Dietziaceae; Dietzia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015454.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP Assembley 3 in SMRT analysis v. 2.3\nGenome Coverage :: 169.96x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:25:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,651\nCDSs (total) :: 3,591\nGenes (coding) :: 3,567\nCDSs (with protein) :: 3,567\nGenes (RNA) :: 60\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 9 of 24\nPseudo Genes (incomplete) :: 17 of 24\nPseudo Genes (internal stop) :: 2 of 24\nPseudo Genes (multiple problems) :: 4 of 24\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 26589
topology: circular
so has quality: SO_0000988
location: 1..26589
location: region:1-26589:1
RO_0002162: 139021

NZ_CP015454
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04880516
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of the haloalkaliphilic hydrocarbon-degrading bacterium Dietzia psychralcaliphila ILA-1T, isolated from a drain of a fish product-processing plant
author: Zhao, J.
author: Hu, B.
author: Geng, S.
author: Nie, Y.
author: Tang, Y.
journal: Unpublished

2
title: Direct Submission
author: Zhao, J.
author: Hu, B.
author: Geng, S.
author: Nie, Y.
author: Tang, Y.
journal: Submitted (27-APR-2016) College of Engineering, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing, Beijing 100871, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26589:1
position: 26589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26589:1:source
so part of: sequence
organism: Dietzia psychralcaliphila
mol type: genomic DNA
strain: ILA-1
isolation source: water
culture collection: JCM:10987
type material: type strain of Dietzia psychralcaliphila
plasmid: unnamed
country: Japan
lat lon: 42.98 N 141.24 E
collection date: 2002

139021
type: Taxonomy
SIO_000068: taxonomy

A6048_RS18010
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18010
old locus tag: A6048_17830
so part of: sequence
location: join(26522..26589,1..271)
location: region:1-26589:1
so has part: feature:26522-26589:1:exon
so has part: feature:1-271:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:26522-26589:1:exon

position:26522:1
position: 26522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-271:1:exon

position:271:1
position: 271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

A6048_RS18010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18010
old locus tag: A6048_17830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017835892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Lsr2 family protein
translation: MAQHFQVRYTDDIDGTDLGETANTVSFAFEGKEYSIDLSDDNAQALREAVAPYIEAGHRVTGRNTKAATRTSAKTSSANTKAIREWAQANGYDVSNRGRIPADVMEAYAAAN
SIO_010081: A6048_RS18010
subclass of: SO_0000673
so part of: A6048_RS18010
location: join(26522..26589,1..271)
location: region:1-26589:1
so has part: feature:26522-26589:1:exon
so has part: feature:1-271:1:exon

WP_107749427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26522-26589:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-271:1:exon

A6048_RS18015
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18015
old locus tag: A6048_17835
so part of: sequence
location: complement(453..1502)
location: region:453-1502:-1
so has part: feature:453-1502:-1:exon
subclass of: SO_0000010

position:453:-1
position: 453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1502:-1
position: 1502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:453-1502:-1:exon

A6048_RS18015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18015
old locus tag: A6048_17835
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010540264.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oxygenase MpaB family protein
translation: MTTRYLRKDEGFFAPDSVARRVWSYPTSALFGFIRSVTIEHLDPDLTAAVDHSGQVVQRPAVRYDRTVQYFATVLFGDAETVIKSSDVLMKVHARAHGPNPVTGGEYDSNRPSSQLWIHMTAWHSILYVYEKYGPGKLSRSDENEYWRECAVAAQFQPIEIDDVPRTRGEVQKYFDDWRDRLASSEAAMYNIDFILDGMRTVFTALPAPMRLVLGPFVRAGVVATYPRWMRSMMGVRQSPVTDALASAAIRPAMAALARGPRAQVWFLNRIAPRGGPVLEGYLRGVDAESSSVYTPQEARKKFGDPRSPLEQYSDLLAARQQGSAPAPYEHNHRDDLLEFATPKAQASR
SIO_010081: A6048_RS18015
subclass of: SO_0000673
so part of: A6048_RS18015
location: complement(453..1502)
location: region:453-1502:-1
so has part: feature:453-1502:-1:exon

WP_235027519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:453-1502:-1:exon

A6048_RS18020
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18020
old locus tag: A6048_17840
so part of: sequence
location: complement(2377..3861)
location: region:2377-3861:-1
so has part: feature:2377-3861:-1:exon
subclass of: SO_0000010

position:2377:-1
position: 2377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3861:-1
position: 3861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2377-3861:-1:exon

A6048_RS18020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18020
old locus tag: A6048_17840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: Ig-like domain-containing protein
translation: MLMKKLTSALAGVSMAAAAAVAVTPTANAQADVIDDTRTVTFTCQGTDVGQAVVSPSEFDVTFPEEVAPGEFFSVTLQPGQMRNNSRDLQRITFDYSLPDNASLIGLNLGSDGLNVGGTAQVVRVDATSKTTNAQGGAARIWGGVSARYGSSSSTNGTGGLTVNANTDFRLPSLEIVMRAPATVGEEISIGLPGANLTGFNAASTDFQWIKARTSSWSNNAVANECTSGASAAELTTTTVGDLDPVLLDTTTTVTSSIDRTGPNQSTTLTAQVGTQYGVLPQIATGDVTFRDATSDEVLGTATPDSSGVASIQHTFDPLTAGQPDETRTVVAQFSGVDGDLTGSTSEPVTVTLTGDPTVNYTTTFNLTAVLNQEDEGFVPVTINASINRPSGTTIPDGFRVQLFRGNTAIGEPMALPEGSTMSWTDSIERLPQTRTQTYRIESVPFVDDFEQWTGTSPAPVTVTVNGTDPSLDPPIVPGAGSLGSLTASLSFGS
SIO_010081: A6048_RS18020
subclass of: SO_0000673
so part of: A6048_RS18020
location: complement(2377..3861)
location: region:2377-3861:-1
so has part: feature:2377-3861:-1:exon

WP_107749429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2377-3861:-1:exon

A6048_RS18025
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18025
old locus tag: A6048_17845
so part of: sequence
location: 4056..4775
location: region:4056-4775:1
so has part: feature:4056-4775:1:exon
subclass of: SO_0000010

position:4056:1
position: 4056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4775:1
position: 4775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4056-4775:1:exon

A6048_RS18025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18025
old locus tag: A6048_17845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTRHTSVRRATAVALTAMAAIAAGGVASAQIPGENRATQVFPVDDRRVQLAVQGPDAATGSVSGSIQNNTDSNLTCTGVDGSPAGTVTRDTIVAQSVDFYAKFPYSPLQPFTLVVQGPGFDDQVFDLGSAVGFAPASLAQMLWPDLAAMSPIAQSYDAARLAGQAVSMGTSLSVPARTSQPFTVQLPRPSVGGWQDFSTGVFVTCVLEGQRYVFHGYENGRPAVIPDPSGDTGRFPGS
SIO_010081: A6048_RS18025
subclass of: SO_0000673
so part of: A6048_RS18025
location: 4056..4775
location: region:4056-4775:1
so has part: feature:4056-4775:1:exon

WP_146166402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4056-4775:1:exon

A6048_RS18030
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18030
old locus tag: A6048_17850
so part of: sequence
location: 4862..5566
location: region:4862-5566:1
so has part: feature:4862-5566:1:exon
subclass of: SO_0000010

position:4862:1
position: 4862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5566:1
position: 5566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4862-5566:1:exon

A6048_RS18030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18030
old locus tag: A6048_17850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTPTKTVLGAAAAVAIAATTVLSGGVAAAQIPGADNEGVVVITDSDLVEVTVDDKGEAPSQVSGSITNTGDRPLRCATPGLDGAEYPGQVTEAGVVARAMNYYATHIYAPGGFAIPIGGGGPVFAGSLYDILPGGSIGGSVLGDSTAELVEIRDMQAAARLAGRTGDPRVGSSTAFTLAAGQSSDWVADLAVPGTGDRGQWQAAAMFFCRHTSNPVENFVFAGFENDVEPGVL
SIO_010081: A6048_RS18030
subclass of: SO_0000673
so part of: A6048_RS18030
location: 4862..5566
location: region:4862-5566:1
so has part: feature:4862-5566:1:exon

WP_107749409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4862-5566:1:exon

A6048_RS18035
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18035
old locus tag: A6048_17855
so part of: sequence
location: 5626..6402
location: region:5626-6402:1
so has part: feature:5626-6402:1:exon
subclass of: SO_0000010

position:5626:1
position: 5626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6402:1
position: 6402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5626-6402:1:exon

A6048_RS18035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18035
old locus tag: A6048_17855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSSLRRAAVATVAATGLVVSGLAAASAQNVIPGDTDPRQTIFTNRDGVTITIDGIDRETGAVSGTFANTFGSNLNCTSPDANPTTVRGGTVSTAEVVERSIDYYSRFQNTQPGQIQAGSSIPFLGQAGVNVPFWPLFQLLPSGSAAGSLSDGVSEAADIANANQDALMSGMVGRIGTFTVNNGATANWSTTLSPPSLGERGADPLGVIFVCRGRASRPVRTTRSPPLRMFPRRSPAPAALLRGRLVQGREPPVLPEA
SIO_010081: A6048_RS18035
subclass of: SO_0000673
so part of: A6048_RS18035
location: 5626..6402
location: region:5626-6402:1
so has part: feature:5626-6402:1:exon

WP_108835190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5626-6402:1:exon

A6048_RS18370
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18370
so part of: sequence
location: complement(6971..7309)
location: region:6971-7309:-1
so has part: feature:6971-7309:-1:exon
subclass of: SO_0000010

position:6971:-1
position: 6971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7309:-1
position: 7309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6971-7309:-1:exon

A6048_RS18370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAWKRNLGRDTDRADYKRVIRFFPDYGRDHPLWESETDKYGMDPEDYGPVEVGWGQRLARWMAHWETNFVPETGWKSEQAAGGLETCGRLAVWKTCVGKSPTLPKCVMNGGV
SIO_010081: A6048_RS18370
subclass of: SO_0000673
so part of: A6048_RS18370
location: complement(6971..7309)
location: region:6971-7309:-1
so has part: feature:6971-7309:-1:exon

WP_162533949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6971-7309:-1:exon

A6048_RS18040
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18040
old locus tag: A6048_17860
so part of: sequence
location: complement(7594..8541)
location: region:7594-8541:-1
so has part: feature:7594-8541:-1:exon
subclass of: SO_0000010

position:7594:-1
position: 7594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8541:-1
position: 8541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7594-8541:-1:exon

A6048_RS18040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18040
old locus tag: A6048_17860
inference: COORDINATES: protein motif:HMM:NF025056.2
GO function: GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toll/interleukin-1 receptor domain-containing protein
translation: MPTSLTPDPPVAFVSYSGAGEEHVGWVINLARRLRANGVDVHLDRWDVSLGHDLYLFMERYADPSARVLVVLSDDYGPKANRRDEVSSGVGTETTIVSPTVYRNLGGNRVIPVIPDSGTVADEPVVPTYLVGRTWIDFRHDHEAAYEQLVRDLHGAPIEAAPPLGPSPFVGTTDAQASALIRNDPARWNDGRTGGLVQVNLNENSGRFAIGSEEARFEMHLEYPFSAAQPGGQKIIRHYKDGIGHIGLVAAAADHPEAFADLSALPMSNRVESTVPGDAMVMMNRCGYWALLMLDKRSLPPRPERLRANRPCCVS
SIO_010081: A6048_RS18040
subclass of: SO_0000673
so part of: A6048_RS18040
location: complement(7594..8541)
location: region:7594-8541:-1
so has part: feature:7594-8541:-1:exon

WP_108835191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7594-8541:-1:exon

A6048_RS18045
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18045
old locus tag: A6048_17865
so part of: sequence
location: 8729..9295
location: region:8729-9295:1
so has part: feature:8729-9295:1:exon
subclass of: SO_0000010

position:8729:1
position: 8729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9295:1
position: 9295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8729-9295:1:exon

A6048_RS18045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18045
old locus tag: A6048_17865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013809079.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKIGYGRVSTAEQSVETQREALVALGVAPEKIHLDRAVSGRRRVRPALERAIGELRDGDELVVSKLDRLGRSLRDLLDIADEIRAKGAALTVGRTTYDPSDPVGAMLFQVLGMAAEFEVAMNRERTREGVARAKAEGKYKGRQHKLSPTDAEKLRRMHASGEYTAAELGRFFGLHRTSVYRYLNEAKS
SIO_010081: A6048_RS18045
subclass of: SO_0000673
so part of: A6048_RS18045
location: 8729..9295
location: region:8729-9295:1
so has part: feature:8729-9295:1:exon

WP_107749413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8729-9295:1:exon

A6048_RS18050
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
gene: istB
locus tag: A6048_RS18050
old locus tag: A6048_17870
so part of: sequence
location: complement(9437..10210)
location: region:9437-10210:-1
so has part: feature:9437-10210:-1:exon
subclass of: SO_0000010

position:9437:-1
position: 9437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10210:-1
position: 10210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9437-10210:-1:exon

A6048_RS18050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
gene: istB
locus tag: A6048_RS18050
old locus tag: A6048_17870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003977840.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MSEFVVSRISAAAERLKLPHTAASAADAAARAEQAQLGYLDFLDQLLEEEVTHRESGRFRNALKLSGLPHHKTLEDFDFAFQPGIDARRLKDLAAMEFVERKANVALLGPPGVGKTHIAVALAVTACRAGHSIYYTTLDELVRKLRKADNLGTLPKQLSSLARPSLLVIDEVGYLPLSRAEANMFFQLISRRYEKGSTIITSNKTFAEWGTVLGDEVLATAILDRYLHHCEVIAINGPSYRLKDRADLVSNAEDPAP
SIO_010081: A6048_RS18050
subclass of: SO_0000673
so part of: A6048_RS18050
location: complement(9437..10210)
location: region:9437-10210:-1
so has part: feature:9437-10210:-1:exon

WP_107749414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9437-10210:-1:exon

A6048_RS18055
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
gene: istA
locus tag: A6048_RS18055
old locus tag: A6048_17875
so part of: sequence
location: complement(10207..11568)
location: region:10207-11568:-1
so has part: feature:10207-11568:-1:exon
subclass of: SO_0000010

position:10207:-1
position: 10207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11568:-1
position: 11568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10207-11568:-1:exon

A6048_RS18055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
gene: istA
locus tag: A6048_RS18055
old locus tag: A6048_17875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006937932.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MILDEESWMNIRRFKQLRATGMSYAEIGRECGCDWRTVRKYLSEDAPVSPPSAPSRKGTQRIAITAAIAALIDVMLRACIDIKATVICERLADEHDVHVHYQRVKNYCRARRPEIRAELGLDEPGTASLHRRIATLPGAQAQVDWGDEGDLLGTGVHIYSFHMTLSYSRDPFCCFVTSMDAATFFDCHRRAFAHFGGVPAAIVYDRLKTVVRRHVAPGKAVPVTAAATAFAGHYGFDIDVLAAYRPTGKGRVERQVDIVREHVVAGRSFRSTDDADAAFARWVTIRRKQAHRTHGQVIGEAAATDHAALGPLPAMGYEIFDDHVRTVGKDCLISFEANHYSVPAAEVTARMKVLVRATADHVMICRLDTPAKVLATHRRGSRGHEWIIDPSHWDGLPDGTGRAISHILPDDGTTPVKPMGSMSVLEQFLSGIEPVPDIHWPLASYELVAGQAS
SIO_010081: A6048_RS18055
subclass of: SO_0000673
so part of: A6048_RS18055
location: complement(10207..11568)
location: region:10207-11568:-1
so has part: feature:10207-11568:-1:exon

WP_235027516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10207-11568:-1:exon

A6048_RS18060
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18060
old locus tag: A6048_17880
so part of: sequence
location: 11557..12390
location: region:11557-12390:1
so has part: feature:11557-12390:1:exon
subclass of: SO_0000010

position:11557:1
position: 11557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12390:1
position: 12390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11557-12390:1:exon

A6048_RS18060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18060
old locus tag: A6048_17880
inference: COORDINATES: protein motif:HMM:NF039733.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6338 family protein
translation: MQDHGGGPPFGNRQLAGRRLQGWPTHLGEQLRNAEHRPTHEPVPGPTHQGVRGHQLLALLLIILPGVVFEAVSTSFRGPSPTQRDGTGRVLSALAVSAALAVAYLPILGPLAPTMLEQARAGLLSVGKWFAITGVGALLLFGVPAGLALAVNAWRNRKNDTPVTALYDPTPSAWDFAFKRSQEAFIRVLLTDGTFVGGWFGRNSFAAGYPDDHELYLEEVYSLDEHGKFGEPTGDGVWISGAEIATLEIIKVDSVGSQEGTKTRTTTPTSGGDRDDE
SIO_010081: A6048_RS18060
subclass of: SO_0000673
so part of: A6048_RS18060
location: 11557..12390
location: region:11557-12390:1
so has part: feature:11557-12390:1:exon

WP_268817327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11557-12390:1:exon

A6048_RS18070
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18070
old locus tag: A6048_17885
so part of: sequence
location: complement(13495..14256)
location: region:13495-14256:-1
so has part: feature:13495-14256:-1:exon
subclass of: SO_0000010

position:13495:-1
position: 13495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14256:-1
position: 14256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13495-14256:-1:exon

A6048_RS18070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18070
old locus tag: A6048_17885
inference: COORDINATES: protein motif:HMM:NF019886.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma factor-like helix-turn-helix DNA-binding protein
translation: MKDLDELSEVGDQSGVESWLRWDLDDLEDRVDRKDGDAALYRALQRRGFKGARQDEFEDVLAKYGLAVIAAWMVKGCIGEKCREKGLGGAEVLDGFDLDHYDIEWLVVETVSRSIRAFREDVLPNGKWQPDRGAALRTYFIGQCLIRYIDVAKAWRRQKEADERLVAAFSERGRASLNQPVFGSVEADVVRSEMMELRLSRVKNDDAREALLMQLDGYKIKEISEQLGRTEKSVHGMLKYAKKQVARGEEDTA
SIO_010081: A6048_RS18070
subclass of: SO_0000673
so part of: A6048_RS18070
location: complement(13495..14256)
location: region:13495-14256:-1
so has part: feature:13495-14256:-1:exon

WP_159110331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13495-14256:-1:exon

A6048_RS18075
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18075
old locus tag: A6048_17890
so part of: sequence
location: 14579..14839
location: region:14579-14839:1
so has part: feature:14579-14839:1:exon
subclass of: SO_0000010

position:14579:1
position: 14579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14839:1
position: 14839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14579-14839:1:exon

A6048_RS18075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18075
old locus tag: A6048_17890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017836485.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MERKIQGHDISEEQIDQWVDEAEAGYDPAWLGKRMGRPARAEHAAKVVPVRLTDAELGAVMARAEREHLNRSEAIRQALAQWAAAS
SIO_010081: A6048_RS18075
subclass of: SO_0000673
so part of: A6048_RS18075
location: 14579..14839
location: region:14579-14839:1
so has part: feature:14579-14839:1:exon

WP_107749418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14579-14839:1:exon

A6048_RS18080
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18080
old locus tag: A6048_17895
so part of: sequence
location: 14821..15075
location: region:14821-15075:1
so has part: feature:14821-15075:1:exon
subclass of: SO_0000010

position:14821:1
position: 14821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15075:1
position: 15075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14821-15075:1:exon

A6048_RS18080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18080
old locus tag: A6048_17895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017836486.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRRLVIIRPSAHKHGIADDDIRAALATPLLSGPLDDDHPQRILTLGFDSQARVLELVALHYDDGSIEVIHAMKARRTYLDLLD
SIO_010081: A6048_RS18080
subclass of: SO_0000673
so part of: A6048_RS18080
location: 14821..15075
location: region:14821-15075:1
so has part: feature:14821-15075:1:exon

WP_107749419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14821-15075:1:exon

A6048_RS18085
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18085
old locus tag: A6048_17900
so part of: sequence
location: 15327..16109
location: region:15327-16109:1
so has part: feature:15327-16109:1:exon
subclass of: SO_0000010

position:15327:1
position: 15327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16109:1
position: 16109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15327-16109:1:exon

A6048_RS18085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18085
old locus tag: A6048_17900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006553233.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTRKLALCNQKGGVGKTATTLGLASALSHQGRNVLVVDVDPQGNSTTGLGVELTETMMTTFDLMNRTVPGSAADAVIATPWDKVDLIPSNEALANIESDGANDLIFRLDIAFEGLDLSAYDAVLFDCPPSLGKLLFAVLCAADGVIAVTEPTIDSVRGIENLQETIRNVQRRPNPHLVLEKLVLSRKRTTGEHQFRERELRDTYGDLVAKTSIPELTARQDAHSSHTPIHSFTGGKALALQVAYTDLLAELALGPKGAAA
SIO_010081: A6048_RS18085
subclass of: SO_0000673
so part of: A6048_RS18085
location: 15327..16109
location: region:15327-16109:1
so has part: feature:15327-16109:1:exon

WP_031264777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15327-16109:1:exon

A6048_RS18100
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18100
old locus tag: A6048_17905
so part of: sequence
location: 17591..18901
location: region:17591-18901:1
so has part: feature:17591-18901:1:exon
subclass of: SO_0000010

position:17591:1
position: 17591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18901:1
position: 18901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17591-18901:1:exon

A6048_RS18100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18100
old locus tag: A6048_17905
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHVDAQGHPYLAGPRRPLPTQIRALTRAPITDRTDASAVGWSILLACAHARMQYRDLHNAAFTARWPGLEFVRTHRTSTGERSPRFDAAAELARQWAKAVTAASYTRPSTAGPSPARRTAEATVADLLARMDARPGRWAGKTGAQDRLVLLALAARTLAAAASEVHLSERDWALAAGLTRDTVADRLRVLLQQGWVARVQRAAGPWAAVWRIVRPGGGEQRSGAVFTPEMQRQLHAELECAREDIWHARPLGVLGMRVWAHMAVGRASVRELATRLGICPATVRSKLRALRSFGLCTGDGRGYRSRSRLARAAVAAGVDGAHADRVRLYRLHSAVFVWWFTTRHQPERSDALAEWGEFPNPAEAEQTHPTDIALAYGATSTGPPLSATTWGAAMAAQDRHRDADPDSWWELVAAARAALPAPDMLLAPHQWARTAA
SIO_010081: A6048_RS18100
subclass of: SO_0000673
so part of: A6048_RS18100
location: 17591..18901
location: region:17591-18901:1
so has part: feature:17591-18901:1:exon

WP_108835192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17591-18901:1:exon

A6048_RS18105
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
gene: mobF
locus tag: A6048_RS18105
old locus tag: A6048_17910
so part of: sequence
location: complement(18930..22469)
location: region:18930-22469:-1
so has part: feature:18930-22469:-1:exon
subclass of: SO_0000010

position:18930:-1
position: 18930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22469:-1
position: 22469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18930-22469:-1:exon

A6048_RS18105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
gene: mobF
locus tag: A6048_RS18105
old locus tag: A6048_17910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017835885.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MSLRAVHAGTGYQYLLRSVATHDADPQGMALSDYYAAKGTPPGRWIGSGLQGLNSQSVTSGATVTEAQMAALYGEGLHPDTDQMMAGGKPLAACKLGRSFPLYTGGVDVLEAIATAEKSFLAVEGRRPTTDERGQIAEGTARPFYSDEFGYEHASGKDVIAWVNRERDQVKQAVAGFDFTFSPVKSVSVLWALADENTASRVAVLHHEAVAEALAWAEDNAIYTRVGTGGIKQVKTSGIIASEFTHFDTRCGDPDLHSHVLLANKVQGPDGRWLSLDSRAIHQMHQAISARYDAILHDLLTRRMGVEFQAHYPHPDKAPIWEISGIDRRLIEAFSSRRTLARPVYDRLVAEYVEKNNRQPSQRAAYALWQKAILDTRDAKKPAQSLSEHRAAWREMAEKVVGTHAVDRVVGEVTGQGRSEVSRELFDAQVHSRQVAEQAVAAVTARRAQFRRSHIDTAVSTALKGYRFEGAEALGRAHEEVMATAMGELVVQLTPPEILDLPSPLIGPNGAGVDRHANAEKYTTQAVLDAETATLEAAHTPVAVIATRADLDSALAAHTKAEGWSLNAGQTALAQHLVGAGTLLAAGVGPAGTGKTASMKVVARTWQQTGRSVIGLAPSAAAAAVLAGDIGTDCHTIDSLTFTWMGKHPNLPGKSLDALPVSIKPGDMLLVDEAGMASTENLAALTEIAAESGAILRLIGDPKQLAAVETGGLFADLTRTPGTPQLREVMRMGADTDQADATLGLREGDPGALALYNERGWITGGHREQMLTQAVEAFLAGTKAGRQSLIIASTNTDVDTLNEVIRSSRIAHGLVDDAHTTRVARGDTVGVGDTVIARTNSTLYAGDRTYLGRVINGQLFTVTGITDDGSLAVRDQSTGQDMLVPSSYAGKHVHLGYAATIHRAQGATVDTTHAVIDTSVDRAGLYVAMTRGKRENRAYAVCEPVLDLGAEDAHMHSAGDHQAPTPTQMLAGVLARDTHQASATETLRQEYAAATSDERLEQLYRHGAELAARDFTAATFPAYIDALPRAYAHQLEADPDQYQALAAAWTEAATRGLDPRDLWQEATENLDTANQPGTVIAHRIRHATGETTDSAALPTPPPVAPGCDTELTTWLAETHRTLAAEPAATAVARAASFTAEDFVASYLDSRSAEHEPGPDTHPTTSSPWGPSPDSSPDLW
SIO_010081: A6048_RS18105
subclass of: SO_0000673
so part of: A6048_RS18105
location: complement(18930..22469)
location: region:18930-22469:-1
so has part: feature:18930-22469:-1:exon

WP_107749422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18930-22469:-1:exon

A6048_RS18110
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18110
old locus tag: A6048_17915
so part of: sequence
location: 22720..23076
location: region:22720-23076:1
so has part: feature:22720-23076:1:exon
subclass of: SO_0000010

position:22720:1
position: 22720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23076:1
position: 23076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22720-23076:1:exon

A6048_RS18110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18110
old locus tag: A6048_17915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017835886.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAATKTDSRSQTARARARQAMADELERARKRESKLVAVFSAIDARADAEAALGEALIELKDLGVAQSDLAEMTGLSAREVGTAIRAAKDRTAPDDQTPETTDEHASDTTSDHNGAESH
SIO_010081: A6048_RS18110
subclass of: SO_0000673
so part of: A6048_RS18110
location: 22720..23076
location: region:22720-23076:1
so has part: feature:22720-23076:1:exon

WP_235027518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22720-23076:1:exon

A6048_RS18125
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18125
old locus tag: A6048_17920
so part of: sequence
location: complement(24193..24762)
location: region:24193-24762:-1
so has part: feature:24193-24762:-1:exon
subclass of: SO_0000010

position:24193:-1
position: 24193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24762:-1
position: 24762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24193-24762:-1:exon

A6048_RS18125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18125
old locus tag: A6048_17920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017835889.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MSTSEKIARAYGVLLARGEKVTVRAVQREAGVRIGEVAAWMREHAGGAAGDVPAAPDLSEAMSAMVASVWAAAWKRAAEQADEATAVALDAARAGEAHALEAAEQAAAERDEAVASRDRALRELEAVRDELEQLRGQLEETRQDAAVARAKAEESDRARVRAEATSDTLREVLDSLREAARTPGQPGES
SIO_010081: A6048_RS18125
subclass of: SO_0000673
so part of: A6048_RS18125
location: complement(24193..24762)
location: region:24193-24762:-1
so has part: feature:24193-24762:-1:exon

WP_107749425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24193-24762:-1:exon

A6048_RS18130
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18130
old locus tag: A6048_17925
so part of: sequence
location: complement(24978..25742)
location: region:24978-25742:-1
so has part: feature:24978-25742:-1:exon
subclass of: SO_0000010

position:24978:-1
position: 24978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25742:-1
position: 25742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24978-25742:-1:exon

A6048_RS18130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18130
old locus tag: A6048_17925
inference: COORDINATES: protein motif:HMM:NF020387.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RES domain-containing protein
translation: MTDDITVCTNTGLALLPAGGQTVYRLAKPSYGVLNPPARGVSSSEDRVGWNRFDLPGEQTIYCASSAEGAYGELLGALKVGGPYRAQEYLDDPGADDLYALIARDWNDLGVRPPGVVDIHWLYAHRLYTVALPASGWFVEIEYARTITYLASHIPLPLWERGVDEITVAQTRSGDRHLTTELAATLAAAPLAGGLRALGIHYYSKHGTQWSCWAVWLRAGVASALDASPGQPVAPPADNAALAAVLDIYNLTAR
SIO_010081: A6048_RS18130
subclass of: SO_0000673
so part of: A6048_RS18130
location: complement(24978..25742)
location: region:24978-25742:-1
so has part: feature:24978-25742:-1:exon

WP_159110333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24978-25742:-1:exon

A6048_RS18135
type: Gene
subclass of: SO_0000704
RO_0002162: 139021
locus tag: A6048_RS18135
old locus tag: A6048_17930
so part of: sequence
location: complement(25846..26226)
location: region:25846-26226:-1
so has part: feature:25846-26226:-1:exon
subclass of: SO_0000010

position:25846:-1
position: 25846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26226:-1
position: 26226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25846-26226:-1:exon

A6048_RS18135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 139021
locus tag: A6048_RS18135
old locus tag: A6048_17930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017835891.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVVDQAILAHTETMKLSSAELARQLVQHLGPTVVAVAAGVRDKKLPYKWSADGGPVPRDGALRRLQVAHRAWVAIATSEGADVARAWFIGANPRLDEQPPFMAIAAGKFKPVMSAAAAFVDGTDN
SIO_010081: A6048_RS18135
subclass of: SO_0000673
so part of: A6048_RS18135
location: complement(25846..26226)
location: region:25846-26226:-1
so has part: feature:25846-26226:-1:exon

WP_107749432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25846-26226:-1:exon