Bacillus amyloliquefaciens strain GKT04 plasmid p.unname1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus amyloliquefaciens group.
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses
Submitted (22-MAR-2021) Biotechnology Research Institute, Guangxi Academy of Agricultural Sciences, No.174,Daxue Road, Nanning 530007, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP072121.1.\nBacteria and source DNA available from Biotechnology Research\nInstitute,Guangxi Academy of Agricultural Sciences, Nanning, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v1.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/27/2023 00:52:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,169\nCDSs (total) :: 4,051\nGenes (coding) :: 3,981\nCDSs (with protein) :: 3,981\nGenes (RNA) :: 118\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 5\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 39 of 70\nPseudo Genes (incomplete) :: 39 of 70\nPseudo Genes (internal stop) :: 13 of 70\nPseudo Genes (multiple problems) :: 18 of 70\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025081.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015384742.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017358766.1
COORDINATES: protein motif:HMM:NF013930.2
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_014471336.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016622858.1
COORDINATES: protein motif:HMM:NF024668.2
COORDINATES: similar to AA sequence:RefSeq:WP_004399261.1
catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002459223.1
COORDINATES: similar to AA sequence:RefSeq:WP_018393257.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_004398504.1
COORDINATES: similar to AA sequence:RefSeq:WP_004399073.1
COORDINATES: similar to AA sequence:RefSeq:WP_017474126.1
COORDINATES: similar to AA sequence:RefSeq:WP_017358897.1
COORDINATES: protein motif:HMM:NF037912.2
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_017358465.1
COORDINATES: similar to AA sequence:RefSeq:WP_002338168.1
COORDINATES: similar to AA sequence:RefSeq:WP_002358223.1
COORDINATES: similar to AA sequence:RefSeq:WP_017359020.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002350163.1
COORDINATES: similar to AA sequence:RefSeq:WP_017358761.1
bifunctional lytic transglycosylase/C40 family peptidase
DUF3991 and TOPRIM domain-containing protein