Mycobacterium paragordonae strain 49061 plasmid unnamed4, complete sequence.
type: Entry
definition: Mycobacterium paragordonae strain 49061 plasmid unnamed4, complete sequence.
sequence version: NZ_CP025550.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP025550.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08222636
keyword: RefSeq
source: Mycobacterium paragordonae
organism: Mycobacterium paragordonae
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP025550.1.\nBacteria and source DNA available from Department of Microbiology\nand Immunology, Seoul National University College of Medicine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.2\nExpected Final Version :: yes\nGenome Coverage :: 38.19x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:43:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,518\nCDSs (total) :: 6,464\nGenes (coding) :: 6,337\nCDSs (with protein) :: 6,337\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 127\nCDSs (without protein) :: 127\nPseudo Genes (ambiguous residues) :: 0 of 127\nPseudo Genes (frameshifted) :: 40 of 127\nPseudo Genes (incomplete) :: 102 of 127\nPseudo Genes (internal stop) :: 9 of 127\nPseudo Genes (multiple problems) :: 21 of 127\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 17187
topology: circular
so has quality: SO_0000988
location: 1..17187
location: region:1-17187:1
RO_0002162: 1389713

NZ_CP025550
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08222636
type: BioSample
SIO_000068: biosample

1
title: Mycobacterium paragordonae strain 49061 isolate Asan medical center chromosome 1
author: Kim, B.-J.
journal: Unpublished

2
title: Direct Submission
author: Kim, B.-J.
journal: Submitted (27-DEC-2017) Department of Microbiology and Immunology, Seoul National University College of Medicine, 103 Daehak-ro (Yeongeon-dong), Jongno-gu, Seoul 03080, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17187:1
position: 17187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17187:1:source
so part of: sequence
organism: Mycobacterium paragordonae
mol type: genomic DNA
strain: 49061
isolation source: sputum sample
host: Homo sapiens
type material: type strain of Mycobacterium paragordonae
plasmid: unnamed4
country: South Korea: Seoul
collection date: 2010

1389713
type: Taxonomy
SIO_000068: taxonomy

C0J29_RS32500
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32500
old locus tag: C0J29_32485
so part of: sequence
location: 69..1274
location: region:69-1274:1
so has part: feature:69-1274:1:exon
subclass of: SO_0000010

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1274:1
position: 1274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1274:1:exon

C0J29_RS32500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32500
old locus tag: C0J29_32485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007172407.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSENAAAGEPTGDDRCRYPGCARSSRPDPATGRPSLYCEQSDPAGGPVHNRASAWRARRAQRAGAVAVQDTGAAAAAAPVSLARATLEQRLADFPVKVGELREFLGAVLDGVRAAGDVEAAGAEVEDAHRDALSKIAEADRRVAGAERAARLAEERAAGAERDRDEADAVAEEAVAEAARGAEEADAEIARVRAEAAEVVARAREELARARADHRRQLDERDAELQQAQEEANTAQLDAAAARAAQQGAQEQAARERLTAEQLRGELDQTRQQLHAELDAARESVRQAAADAAALRLQLATLTAEAEAAGRAAQADREAVGALRGELEQLRGEARAEREALRAAHAEQLAQVQRTADDRAAALNQALTLARETAETYRAQLAETRPRTGQPSTTRKRPPTQ
SIO_010081: C0J29_RS32500
subclass of: SO_0000673
so part of: C0J29_RS32500
location: 69..1274
location: region:69-1274:1
so has part: feature:69-1274:1:exon

WP_244218058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69-1274:1:exon

C0J29_RS32505
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32505
old locus tag: C0J29_32490
so part of: sequence
location: complement(1376..1687)
location: region:1376-1687:-1
so has part: feature:1376-1687:-1:exon
subclass of: SO_0000010

position:1376:-1
position: 1376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1687:-1
position: 1687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1376-1687:-1:exon

C0J29_RS32505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32505
old locus tag: C0J29_32490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDPTERARILAALAEQQAQQRQHHVTELADLYTRITELRAELKTAEQTYRAAYRRATGTGLLTGPQLRTLGLPPIDARRRPKTTGKPTPTTPAQQSQKLQHG
SIO_010081: C0J29_RS32505
subclass of: SO_0000673
so part of: C0J29_RS32505
location: complement(1376..1687)
location: region:1376-1687:-1
so has part: feature:1376-1687:-1:exon

WP_120795283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1376-1687:-1:exon

C0J29_RS32510
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32510
old locus tag: C0J29_32495
so part of: sequence
location: 2203..2958
location: region:2203-2958:1
so has part: feature:2203-2958:1:exon
subclass of: SO_0000010

position:2203:1
position: 2203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2958:1
position: 2958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2203-2958:1:exon

C0J29_RS32510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32510
old locus tag: C0J29_32495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLAVSARVSVSVWLPAAAHTALCASAAGEGVSLPVLARRAAAVAVDGEGARVLMPAPPAQAVEDVRTAGYGLNRLLPAAGGALSGAQCGALAGRLAVVLDRITAASAGVRIMASPPIGCHGAGGAAGRSAADEEGWRLVRVTTDPDTARLWAVAAQAAGFASVANWVRDGLAGLYGLAVARPPTAVTIDARQVCGRVLGLISQTEALTADWPPNSDGGGEGLGRRIEAAGAAVWAALDSLITHGGNPKARR
SIO_010081: C0J29_RS32510
subclass of: SO_0000673
so part of: C0J29_RS32510
location: 2203..2958
location: region:2203-2958:1
so has part: feature:2203-2958:1:exon

WP_162951716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2203-2958:1:exon

C0J29_RS32515
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32515
old locus tag: C0J29_32500
so part of: sequence
location: 2955..4103
location: region:2955-4103:1
so has part: feature:2955-4103:1:exon
subclass of: SO_0000010

position:2955:1
position: 2955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4103:1
position: 4103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2955-4103:1:exon

C0J29_RS32515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32515
old locus tag: C0J29_32500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAKITHGRSAARALAYDHGPGRADEHVNPRKVAGNIPDRDWRIRAHRMQRFVDAHQHDKTDRGVYRVALANPESDRVLSDREWRQVAEKFVDRFGASKGMWEATRHDRHHIHLTISKDGFEGTRMSTSHDYRRVAAICRELETEHGLTNAAGRAGRGSGRTRGDREQTQRGAPQPDRDWLRTTISGVLDEGGGIEELRAAGVAVKLNQASTGRVSGISYSRTPEPGQDRGNDRGAAEPIWFKGSQLGKAYGWNQVSDQLRDAGHEHGEPAADHASAQRGQRDEAEQRAGSRDGRDDHGGDADAAHRGADEGATPPQPGTGAGGSHGGSGGTLPEPPVLELSLEPKPPSLEQRRAQALAAAHERAAERARAQARDRDQDRGR
SIO_010081: C0J29_RS32515
subclass of: SO_0000673
so part of: C0J29_RS32515
location: 2955..4103
location: region:2955-4103:1
so has part: feature:2955-4103:1:exon

WP_120795285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2955-4103:1:exon

C0J29_RS32520
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32520
old locus tag: C0J29_32505
so part of: sequence
location: 4438..5313
location: region:4438-5313:1
so has part: feature:4438-5313:1:exon
subclass of: SO_0000010

position:4438:1
position: 4438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5313:1
position: 5313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4438-5313:1:exon

C0J29_RS32520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32520
old locus tag: C0J29_32505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSANRNAASKDDAGEENPWPWIAILVVVIGWGAWVNRNSLYAKLAPYGLTTEDTRTGYGGGHGGGAYGGDPFGQGSSAAGVGYGTGHFHINLMGWFAIVVLAAGVVAGLWCVLAAVNVSRWHAERGTRAIPKIPVSAAAIVVAAAVFVAVLMLIGRQSNPGARGLVFVGGAGLAVGAWFVVMIYASMPAHYWRLTQAFAGRAEQVLGHGHPGAGRVKAAQWKVEIVGDGSRRWPATLVAAAGPGWQHKPSELDELNRYAREFGWPPYEWRYDPMCKSVTGTARPDVETLFG
SIO_010081: C0J29_RS32520
subclass of: SO_0000673
so part of: C0J29_RS32520
location: 4438..5313
location: region:4438-5313:1
so has part: feature:4438-5313:1:exon

WP_120795286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4438-5313:1:exon

C0J29_RS32525
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32525
old locus tag: C0J29_32510
so part of: sequence
location: 5319..7148
location: region:5319-7148:1
so has part: feature:5319-7148:1:exon
subclass of: SO_0000010

position:5319:1
position: 5319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7148:1
position: 7148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5319-7148:1:exon

C0J29_RS32525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32525
old locus tag: C0J29_32510
inference: COORDINATES: protein motif:HMM:NF014581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MANQPPVWGPHHQQGLPGGIPLNSGGGYWWGITTGTWLGAFALIGTRQHGAAAMLIVVMTAAAAAVGWGEAQHGKRFASGHWVLFASATVASSGAYFLPALAYVGGFYGQKQHASQRNRPNTTAVVPPAHRPAARMRTAPTTSAPPPPPPRPQTPDAAAVVPAVAGGYFGVNARGAVVAASARGAALVIGPPGSGKTQSVIMPSVAFAPGAVVSTSMKAEVLAATHVARSVRGKCWLFDPGGTTVPAGVIGLRWNPLCDVSDWDSARSVAARLTGPARAGAGAGHQGDHWTDRAETWLSVLLYAARLSTREGDLAALARWSMNPTAAGPECEAIFIVAGQDGDDGATIAATLLDSLLSVPDRERESIASTLGRIMNIYTSSAALRSGISPNFDVHSFVRSTDTVYITAPVDRQRDYAPLIAGFLESVRLAQYHRRQAVDLGTETQTAPVTFVLDEAANTAPIPLPNVVSEAGGQGLHLVVAFQDLSQARARWGHAAEGFLTLFPEKLILAGMNDRSTADMLSKMSGDYDRMTVSVNEPGKSLSTSMSGRPHFSTTRGQPGYTYHTTRTPVLSVADITGVPAGQGLYYGPGGWDLITLNPWWSQRQPLGL
SIO_010081: C0J29_RS32525
subclass of: SO_0000673
so part of: C0J29_RS32525
location: 5319..7148
location: region:5319-7148:1
so has part: feature:5319-7148:1:exon

WP_120795287.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5319-7148:1:exon

C0J29_RS32530
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32530
old locus tag: C0J29_32515
so part of: sequence
location: 7370..7816
location: region:7370-7816:1
so has part: feature:7370-7816:1:exon
subclass of: SO_0000010

position:7370:1
position: 7370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7816:1
position: 7816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7370-7816:1:exon

C0J29_RS32530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32530
old locus tag: C0J29_32515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005113451.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGQRQWVVHPNRSEPGPDEPGRNGHFRAEARTRKPVPSSTCRARVELPQELLHLADPDGAVTFGGYDWSFVVGAAHTFARLRTEVEVPPPFGFKFKRNGPWHWWDGTTTAASILEGADAAERVRPFLEQLFPGAQIKLTDLRYGRSE
SIO_010081: C0J29_RS32530
subclass of: SO_0000673
so part of: C0J29_RS32530
location: 7370..7816
location: region:7370-7816:1
so has part: feature:7370-7816:1:exon

WP_120795288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7370-7816:1:exon

C0J29_RS32535
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32535
old locus tag: C0J29_32520
so part of: sequence
location: 7983..8354
location: region:7983-8354:1
so has part: feature:7983-8354:1:exon
subclass of: SO_0000010

position:7983:1
position: 7983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8354:1
position: 8354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7983-8354:1:exon

C0J29_RS32535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32535
old locus tag: C0J29_32520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDAKNELCDILRARGTAFVFRPLVTHHEGVWRARYPGAEWSVSGNTRDEAASRLRDRALSGLTAGENRRWEDAAIQAAIEHGPLPGVYEIPMSEHEAIMASADPQAALDAALAVIDAQRERRQ
SIO_010081: C0J29_RS32535
subclass of: SO_0000673
so part of: C0J29_RS32535
location: 7983..8354
location: region:7983-8354:1
so has part: feature:7983-8354:1:exon

WP_120795289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7983-8354:1:exon

C0J29_RS32540
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32540
old locus tag: C0J29_32525
so part of: sequence
location: 8588..8773
location: region:8588-8773:1
so has part: feature:8588-8773:1:exon
subclass of: SO_0000010

position:8588:1
position: 8588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8773:1
position: 8773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8588-8773:1:exon

C0J29_RS32540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32540
old locus tag: C0J29_32525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTWLYDRQFELMAERWRNDNPGQELDDKIIDTLRIQARMIVDDIKRSQYLEEVQFLYPSGD
SIO_010081: C0J29_RS32540
subclass of: SO_0000673
so part of: C0J29_RS32540
location: 8588..8773
location: region:8588-8773:1
so has part: feature:8588-8773:1:exon

WP_120795290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8588-8773:1:exon

C0J29_RS32545
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32545
old locus tag: C0J29_32530
so part of: sequence
location: complement(8963..9397)
location: region:8963-9397:-1
so has part: feature:8963-9397:-1:exon
subclass of: SO_0000010

position:8963:-1
position: 8963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9397:-1
position: 9397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8963-9397:-1:exon

C0J29_RS32545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32545
old locus tag: C0J29_32530
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGGNAWLNTVERLCAQGFDPDGPATGGAQVQVFDRATNTMVYRQPIARTVRLEPAEPLLWFRQIIGTGPVFDIAACLPRSLCTEGATVEGEQVIFPQNATQTNEYAVISAADPDQITTLDAWDTWKLTQTSAEQEESLDNLDT
SIO_010081: C0J29_RS32545
subclass of: SO_0000673
so part of: C0J29_RS32545
location: complement(8963..9397)
location: region:8963-9397:-1
so has part: feature:8963-9397:-1:exon

WP_162951717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8963-9397:-1:exon

C0J29_RS32550
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32550
old locus tag: C0J29_32535
so part of: sequence
location: complement(9511..9732)
location: region:9511-9732:-1
so has part: feature:9511-9732:-1:exon
subclass of: SO_0000010

position:9511:-1
position: 9511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9732:-1
position: 9732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9511-9732:-1:exon

C0J29_RS32550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32550
old locus tag: C0J29_32535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003919917.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVVGRPTYTALASRDGRWWLIRVPGLGHNPEDGIYTQARKLSDIEPMARELIALCLEVSQDSFDVQVELPGRS
SIO_010081: C0J29_RS32550
subclass of: SO_0000673
so part of: C0J29_RS32550
location: complement(9511..9732)
location: region:9511-9732:-1
so has part: feature:9511-9732:-1:exon

WP_120795292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9511-9732:-1:exon

C0J29_RS32555
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32555
old locus tag: C0J29_32540
so part of: sequence
location: complement(9818..10441)
location: region:9818-10441:-1
so has part: feature:9818-10441:-1:exon
subclass of: SO_0000010

position:9818:-1
position: 9818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10441:-1
position: 10441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9818-10441:-1:exon

C0J29_RS32555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32555
old locus tag: C0J29_32540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005147752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
translation: MHHLAARQFGLFTAAQARRGGLSKLELAQRLAWGELYEAYRGVFGFTENDADMFRFEDWAARWLALKPAADIDARRAAPDCILSHESAAVIRDLGTVVADGLYLTGPRPINKTPQVHTYLRDIGACGVEWDVFEGLPVAMPGRIVADLADAEIDGSHQGTVIADIIEDGLLTMEEVGRRLDPYAHRWGTSGGVELAQLFTAAACRSK
SIO_010081: C0J29_RS32555
subclass of: SO_0000673
so part of: C0J29_RS32555
location: complement(9818..10441)
location: region:9818-10441:-1
so has part: feature:9818-10441:-1:exon

WP_120795298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9818-10441:-1:exon

C0J29_RS32560
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32560
old locus tag: C0J29_32545
so part of: sequence
location: complement(10474..11022)
location: region:10474-11022:-1
so has part: feature:10474-11022:-1:exon
subclass of: SO_0000010

position:10474:-1
position: 10474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11022:-1
position: 11022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10474-11022:-1:exon

C0J29_RS32560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32560
old locus tag: C0J29_32545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005249408.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSAVLGYARVSTAHQNLDMQINALKMAGAERIWTEQMSGGRDDRPELAALLDYARAGDVLAVWRLDRLGRSLPHLLSVVADLEERGIELRSLTETLDTATAGGRLVFHVFAAVAQFERALASERSAAGVAAARAAGRLPGRPKLPAATVDAVHRLDKGGATRSSIARSLGISRSSVYRVLVP
SIO_010081: C0J29_RS32560
subclass of: SO_0000673
so part of: C0J29_RS32560
location: complement(10474..11022)
location: region:10474-11022:-1
so has part: feature:10474-11022:-1:exon

WP_120795293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10474-11022:-1:exon

C0J29_RS32565
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32565
old locus tag: C0J29_32550
so part of: sequence
location: complement(11437..12318)
location: region:11437-12318:-1
so has part: feature:11437-12318:-1:exon
subclass of: SO_0000010

position:11437:-1
position: 11437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12318:-1
position: 12318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11437-12318:-1:exon

C0J29_RS32565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32565
old locus tag: C0J29_32550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798691.1
GO function: GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NgoMIV family type II restriction endonuclease
translation: MEAGSPAEAYFAEQRSQFHAGLLLGGTLSVGADGIASNADRSSPLSRSIAAHIAAALKVETERERAAGQTSGGKFEEACATFLAAAFNQLGHLRPGEWSIHKVPSRGAASGVARYEQYSHLVDLADAVENNPSLAAILGNAYAIAPDVVVSRATVSDDEINAHRFLVDETVATHASLRTSVQPNPLLHAVVSCKWTLRSDRAQNARSEALNLIRNRKGRLPHVVVVTGEPTPVRISSLALGTGDIDCVYHFALPELVSAVRAEGGEDTKELLDMMIQGKRLKDIADLPLDLAV
SIO_010081: C0J29_RS32565
subclass of: SO_0000673
so part of: C0J29_RS32565
location: complement(11437..12318)
location: region:11437-12318:-1
so has part: feature:11437-12318:-1:exon

WP_120795299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11437-12318:-1:exon

C0J29_RS32570
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32570
old locus tag: C0J29_32555
so part of: sequence
location: complement(12386..13528)
location: region:12386-13528:-1
so has part: feature:12386-13528:-1:exon
subclass of: SO_0000010

position:12386:-1
position: 12386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13528:-1
position: 13528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12386-13528:-1:exon

C0J29_RS32570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32570
old locus tag: C0J29_32555
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020550244.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MKIIDLFSGCGGMTAGFVSAGYDPILSVEWDLQAAATYAANFGADHTYCGDIGTLHDRDVPRADVVIGGPPCQGFSNLGSRNDSDPRNKLWQEYLRVVVRAKPKIFVIENVDRFLTSAEFEALQGTVGDGAALQDYSLSYGVLNAADFGVSQRRNRTIVIGSRVGLVHLPEPTHARGGAGGLIPWRTVRDALAGIPEATRDHVLPDRVWRFDGNDVPGLFTGDDLHLGRRPTAKSLLRYDCIPPGGGRFDLPDELLPDCWLNKPTGTTDVMGRMHWDAPSLTIRTEFFKPEKGQYLHPQWDADDRTRRVNRPITHLEAARLQGFPDSFRWCGSKIGIAKQIGNAVPVGLAHAIAEHLKPYLGARRRPRRARHLAAVPDVA
SIO_010081: C0J29_RS32570
subclass of: SO_0000673
so part of: C0J29_RS32570
location: complement(12386..13528)
location: region:12386-13528:-1
so has part: feature:12386-13528:-1:exon

WP_120795294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12386-13528:-1:exon

C0J29_RS32575
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32575
old locus tag: C0J29_32560
so part of: sequence
location: 13771..14181
location: region:13771-14181:1
so has part: feature:13771-14181:1:exon
subclass of: SO_0000010

position:13771:1
position: 13771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14181:1
position: 14181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13771-14181:1:exon

C0J29_RS32575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32575
old locus tag: C0J29_32560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007538434.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: very short patch repair endonuclease
translation: MPPTPSTQRRLSAQRRRDTAPEIAVRRELHRRGHRFYVDRAPLAGLRRRADLLFPRRKVAVYVDGCFWHCCPWHATHPKRNADWWAAKLATNVARDRDTDARLAAAGWITVRVWEHQHFVEAADLVEQALRTSRSS
SIO_010081: C0J29_RS32575
subclass of: SO_0000673
so part of: C0J29_RS32575
location: 13771..14181
location: region:13771-14181:1
so has part: feature:13771-14181:1:exon

WP_120795300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13771-14181:1:exon

C0J29_RS32580
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32580
old locus tag: C0J29_32565
so part of: sequence
location: complement(14324..14740)
location: region:14324-14740:-1
so has part: feature:14324-14740:-1:exon
subclass of: SO_0000010

position:14324:-1
position: 14324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14740:-1
position: 14740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14324-14740:-1:exon

C0J29_RS32580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32580
old locus tag: C0J29_32565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRRDLGESLIRRPTTARPAARAADTFQIPAAAQPPAGATHRTTVTYPAPLLLGLKTAALNNRGTLGELVRAAIAAALTTPDRLAAKAAANQRVTGTRTTLDLPAEQHRRLKVLAAENGVTVQALVIAAIAHAHPELI
SIO_010081: C0J29_RS32580
subclass of: SO_0000673
so part of: C0J29_RS32580
location: complement(14324..14740)
location: region:14324-14740:-1
so has part: feature:14324-14740:-1:exon

WP_120795295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14324-14740:-1:exon

C0J29_RS32585
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32585
old locus tag: C0J29_32570
so part of: sequence
location: complement(14737..15333)
location: region:14737-15333:-1
so has part: feature:14737-15333:-1:exon
subclass of: SO_0000010

position:14737:-1
position: 14737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15333:-1
position: 15333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14737-15333:-1:exon

C0J29_RS32585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32585
old locus tag: C0J29_32570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010976358.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MILSLVHTKGGVGKTTTSVFLACAAAAQGHEVLLLDADPQGSASSWADRAEHRGTPLPFPVVPVAAADLAAAAATGSGGLVVVDTPPGTAAVIDAAIDAADLVIIPSGAAPADIDRVWPTLDMTTHRATAILLTGIDLRTALATGVPEHLAAEGAPVLRTVIRRRQAITEAFGTLPTRLWDYTDVYAELIAATQEPRA
SIO_010081: C0J29_RS32585
subclass of: SO_0000673
so part of: C0J29_RS32585
location: complement(14737..15333)
location: region:14737-15333:-1
so has part: feature:14737-15333:-1:exon

WP_120795301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14737-15333:-1:exon

C0J29_RS32590
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS32590
old locus tag: C0J29_32575
so part of: sequence
location: 15478..15684
location: region:15478-15684:1
so has part: feature:15478-15684:1:exon
subclass of: SO_0000010

position:15478:1
position: 15478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15684:1
position: 15684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15478-15684:1:exon

C0J29_RS32590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS32590
old locus tag: C0J29_32575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008264012.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MAQHHKGARVYMAARLPEDVYAAVKTKAADTGLSMSQLVADLLSEAIGRPDLVRNLGKHDEGVLPLAM
SIO_010081: C0J29_RS32590
subclass of: SO_0000673
so part of: C0J29_RS32590
location: 15478..15684
location: region:15478-15684:1
so has part: feature:15478-15684:1:exon

WP_120795296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15478-15684:1:exon

C0J29_RS34630
type: Gene
subclass of: SO_0000704
RO_0002162: 1389713
locus tag: C0J29_RS34630
old locus tag: C0J29_32580
so part of: sequence
location: 16018..17166
location: region:16018-17166:1
so has part: feature:16018-17166:1:exon
subclass of: SO_0000010

position:16018:1
position: 16018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17166:1
position: 17166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16018-17166:1:exon

C0J29_RS34630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1389713
locus tag: C0J29_RS34630
old locus tag: C0J29_32580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007170753.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MARTGPRAQALLEASCRSIAAAIVLELGEAPYAGVPCWSGRAQRWAAVTVPVAYHARYDTDVRPAMPGNPVSLNAVRAVAAARAVYADYATGRNCRPTNERLAADTGYSVRTVQRADTALRLLGVATEVLRGRQRTRAERFASWRVGDRRRGWASVWALHDNPLLPKGIGALSPHPRSGPFKEKTPSSSVVTTGTGRPAGVRQDGAARRQAPDQGALALARAWRADAHAPPWAHRHSAQAWAPVLAAPAAHGWTPRDLNQLITDWIGVGHWIAARPHKPIGLLGAVLAWHGTDNLDERPAAADMAREAQQLAADRARIIAQHTARAEHATARAAARAALGGPGHTAARAAAAAAARGAAQRRGHTAAADAADLAARVAAARA
SIO_010081: C0J29_RS34630
subclass of: SO_0000673
so part of: C0J29_RS34630
location: 16018..17166
location: region:16018-17166:1
so has part: feature:16018-17166:1:exon

WP_264917054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16018-17166:1:exon