Mycobacterium paragordonae strain 49061 plasmid unnamed3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium.
Mycobacterium paragordonae strain 49061 isolate Asan medical center chromosome 1
Submitted (27-DEC-2017) Department of Microbiology and Immunology, Seoul National University College of Medicine, 103 Daehak-ro (Yeongeon-dong), Jongno-gu, Seoul 03080, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP025549.1.\nBacteria and source DNA available from Department of Microbiology\nand Immunology, Seoul National University College of Medicine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.2\nExpected Final Version :: yes\nGenome Coverage :: 38.19x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:43:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,518\nCDSs (total) :: 6,464\nGenes (coding) :: 6,337\nCDSs (with protein) :: 6,337\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 127\nCDSs (without protein) :: 127\nPseudo Genes (ambiguous residues) :: 0 of 127\nPseudo Genes (frameshifted) :: 40 of 127\nPseudo Genes (incomplete) :: 102 of 127\nPseudo Genes (internal stop) :: 9 of 127\nPseudo Genes (multiple problems) :: 21 of 127\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mycobacterium paragordonae
COORDINATES: similar to AA sequence:RefSeq:WP_011557485.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007170454.1
COORDINATES: similar to AA sequence:RefSeq:WP_014137498.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010948803.1
COORDINATES: similar to AA sequence:RefSeq:WP_010948804.1
COORDINATES: similar to AA sequence:RefSeq:WP_012395201.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187124.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019936938.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007171119.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007172446.1
COORDINATES: similar to AA sequence:RefSeq:WP_020113196.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020516811.1
COORDINATES: similar to AA sequence:RefSeq:WP_018601125.1
COORDINATES: similar to AA sequence:RefSeq:WP_008258384.1
GO:0045152 - antisigma factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
This anti-anti-sigma factor, or anti-sigma factor antagonist, belongs to a family that includes characterized members SpoIIAA, RsbV, RsfA, and RsfB; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012296247.1
COORDINATES: similar to AA sequence:RefSeq:WP_017555459.1
COORDINATES: similar to AA sequence:RefSeq:WP_005117341.1
COORDINATES: similar to AA sequence:RefSeq:WP_005149417.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896305.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008264024.1