Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium.
Mycobacterium paragordonae strain 49061 isolate Asan medical center chromosome 1
Submitted (27-DEC-2017) Department of Microbiology and Immunology, Seoul National University College of Medicine, 103 Daehak-ro (Yeongeon-dong), Jongno-gu, Seoul 03080, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP025548.1.\nBacteria and source DNA available from Department of Microbiology\nand Immunology, Seoul National University College of Medicine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.2\nExpected Final Version :: yes\nGenome Coverage :: 38.19x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:43:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,518\nCDSs (total) :: 6,464\nGenes (coding) :: 6,337\nCDSs (with protein) :: 6,337\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 127\nCDSs (without protein) :: 127\nPseudo Genes (ambiguous residues) :: 0 of 127\nPseudo Genes (frameshifted) :: 40 of 127\nPseudo Genes (incomplete) :: 102 of 127\nPseudo Genes (internal stop) :: 9 of 127\nPseudo Genes (multiple problems) :: 21 of 127\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mycobacterium paragordonae
COORDINATES: protein motif:HMM:NF025200.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015298255.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244162.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599951.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113447.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298111.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005113452.1
COORDINATES: similar to AA sequence:RefSeq:WP_020458292.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014384952.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF012403.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011896165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562805.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005113456.1
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005115616.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113488.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF013127.2
COORDINATES: similar to AA sequence:RefSeq:WP_005113485.1
helix-turn-helix transcriptional regulator
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF019151.2
COORDINATES: similar to AA sequence:RefSeq:WP_019737176.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03923.1
COORDINATES: similar to AA sequence:RefSeq:WP_003876591.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03920.1
GO:0003674 - molecular_function [Evidence IEA]
type VII secretion integral membrane protein EccD
COORDINATES: similar to AA sequence:RefSeq:WP_003919861.1
COORDINATES: protein motif:HMM:NF025377.2
COORDINATES: protein motif:HMM:NF017793.2
COORDINATES: protein motif:HMM:NF013021.2
COORDINATES: similar to AA sequence:RefSeq:WP_019737594.1
COORDINATES: similar to AA sequence:RefSeq:WP_019931638.1
COORDINATES: protein motif:HMM:TIGR03925.1
COORDINATES: similar to AA sequence:RefSeq:WP_003919854.1
COORDINATES: protein motif:HMM:NF022231.2
COORDINATES: protein motif:HMM:NF022374.2
COORDINATES: similar to AA sequence:RefSeq:WP_003400405.1
COORDINATES: protein motif:HMM:NF022280.2
COORDINATES: similar to AA sequence:RefSeq:WP_017583129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011291581.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113559.1
COORDINATES: similar to AA sequence:RefSeq:WP_020425492.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896248.1
COORDINATES: protein motif:HMM:NF037368.2
COORDINATES: similar to AA sequence:RefSeq:WP_015993801.1
COORDINATES: similar to AA sequence:RefSeq:WP_019811983.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012393308.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777820.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113034.1
COORDINATES: similar to AA sequence:RefSeq:WP_011855063.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005112753.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944659.1
COORDINATES: similar to AA sequence:RefSeq:WP_007168441.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777823.1
COORDINATES: similar to AA sequence:RefSeq:WP_011855065.1
COORDINATES: similar to AA sequence:RefSeq:WP_007167752.1
COORDINATES: similar to AA sequence:RefSeq:NP_217155.1
COORDINATES: similar to AA sequence:RefSeq:WP_005086275.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005086273.1
COORDINATES: similar to AA sequence:RefSeq:WP_005112725.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005116116.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011780450.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006246590.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003887760.1
Rv2640c family ArsR-like transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014211233.1
ArsI/CadI family heavy metal resistance metalloenzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011855078.1
COORDINATES: similar to AA sequence:RefSeq:NP_217159.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011855080.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011855081.1
low molecular weight phosphatase family protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF013073.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_019738165.1
COORDINATES: protein motif:HMM:NF023568.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015297902.1
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_018513759.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016889553.1
COORDINATES: similar to AA sequence:RefSeq:WP_005632887.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011896290.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113710.1
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: protein motif:HMM:NF013704.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003882614.1
COORDINATES: similar to AA sequence:RefSeq:WP_003882613.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_016888812.1
COORDINATES: similar to AA sequence:RefSeq:WP_003925199.1
COORDINATES: similar to AA sequence:RefSeq:WP_011723607.1
COORDINATES: similar to AA sequence:RefSeq:WP_003882610.1
COORDINATES: protein motif:HMM:TIGR00573.1
GO:0004527 - exonuclease activity [Evidence IEA]