Curtobacterium flaccumfaciens pv. flaccumfaciens strain BRIP:70614 plasmid pCff119.
Curtobacterium flaccumfaciens pv. flaccumfaciens
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Curtobacterium.
First complete genome assembly of Curtobacterium flaccumfaciens pv. flaccumfaciens associated with tan spot of mungbean reveals diverse plasmid profiles
Submitted (16-MAR-2021) Centre for Crop Health, University of Southern Queensland, West St, Toowoomba 4350, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP071884.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: hybrid v. unicycler\nAssembly Name :: Cff130_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 500.0x\nSequencing Technology :: Oxford Nanopore; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:31:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,718\nCDSs (total) :: 3,659\nGenes (coding) :: 3,641\nCDSs (with protein) :: 3,641\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 5 of 18\nPseudo Genes (incomplete) :: 13 of 18\nPseudo Genes (internal stop) :: 2 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF024583.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: similar to AA sequence:RefSeq:WP_012489432.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018142663.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018142664.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013806.2
COORDINATES: similar to AA sequence:RefSeq:WP_013160487.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015463292.1
COORDINATES: protein motif:HMM:NF015187.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_018779754.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017887618.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261322.1
COORDINATES: protein motif:HMM:NF022169.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028039.2
COORDINATES: similar to AA sequence:RefSeq:WP_007633146.1
COORDINATES: protein motif:HMM:NF025343.2
COORDINATES: similar to AA sequence:RefSeq:WP_017580300.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358370.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015489218.1
COORDINATES: similar to AA sequence:RefSeq:WP_002854163.1
COORDINATES: similar to AA sequence:RefSeq:WP_002854167.1
COORDINATES: similar to AA sequence:RefSeq:WP_015489004.1
COORDINATES: similar to AA sequence:RefSeq:WP_011186023.1
COORDINATES: protein motif:HMM:NF012248.2
COORDINATES: similar to AA sequence:RefSeq:WP_003846148.1
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: similar to AA sequence:RefSeq:WP_019481854.1
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611786.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_017886893.1
COORDINATES: similar to AA sequence:RefSeq:WP_003994490.1
COORDINATES: similar to AA sequence:RefSeq:WP_017886891.1
COORDINATES: similar to AA sequence:RefSeq:WP_019816159.1
COORDINATES: protein motif:HMM:NF024799.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF020892.2
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016422717.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611758.1
COORDINATES: protein motif:HMM:NF041144.1
GO:0030248 - cellulose binding [Evidence IEA]
expansin EXLX1 family cellulose-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011774374.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF028512.2
COORDINATES: similar to AA sequence:RefSeq:WP_020018303.1
GO:0015293 - symporter activity [Evidence IEA]
cation:dicarboxylase symporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012038159.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IEA]; GO:0017076 - purine nucleotide binding [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011273472.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012300372.1
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: similar to AA sequence:RefSeq:WP_012300378.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012300381.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831599.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300383.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_012300384.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300385.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300386.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012300387.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300388.1
COORDINATES: protein motif:HMM:NF024544.2
COORDINATES: similar to AA sequence:RefSeq:WP_012300390.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012300400.1
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_012300393.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300392.1
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012300404.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF024734.2
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012300408.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831573.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163251.1
COORDINATES: similar to AA sequence:RefSeq:WP_005052715.1
COORDINATES: similar to AA sequence:RefSeq:WP_007270136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300412.1