Serratia symbiotica strain 24.1 plasmid pSsAf24.1-2, complete sequence.
type: Entry
definition: Serratia symbiotica strain 24.1 plasmid pSsAf24.1-2, complete sequence.
sequence version: NZ_CP072651.1
sequence date: 2023-04-15
sequence: sequence
division: CON
label: NZ_CP072651.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13545458
keyword: RefSeq
source: Serratia symbiotica
organism: Serratia symbiotica
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072651.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 116.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 23:36:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,106\nCDSs (total) :: 3,011\nGenes (coding) :: 2,672\nCDSs (with protein) :: 2,672\nGenes (RNA) :: 95\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 339\nCDSs (without protein) :: 339\nPseudo Genes (ambiguous residues) :: 0 of 339\nPseudo Genes (frameshifted) :: 199 of 339\nPseudo Genes (incomplete) :: 225 of 339\nPseudo Genes (internal stop) :: 132 of 339\nPseudo Genes (multiple problems) :: 176 of 339\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 54778
topology: circular
so has quality: SO_0000988
location: 1..54778
location: region:1-54778:1
RO_0002162: 138074

NZ_CP072651
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13545458
type: BioSample
SIO_000068: biosample

1
title: At the gate of mutualism: identification of genomic traits predisposing to insect-bacterial symbiosis in pathogenic strains of the aphid symbiont Serratia symbiotica
author: Renoz, F.
author: Foray, V.
author: Ambroise, J.
author: Baa-Puyoulet, P.
author: Bearzatto, B.
author: Mendez, G.L.
author: Grigorescu, A.S.
author: Mahillon, J.
author: Mardulyn, P.
author: Gala, J.-L.
author: Calevro, F.
author: Hance, T.
journal: Unpublished

2
title: Direct Submission
author: Renoz, F.
author: Foray, V.
author: Ambroise, J.
author: Baa-Puyoulet, P.
author: Bearzatto, B.
author: Mendez, G.L.
author: Grigorescu, A.S.
author: Mahillon, J.
author: Mardulyn, P.
author: Gala, J.-L.
author: Calevro, F.
author: Hance, T.
journal: Submitted (31-MAR-2021) Earth and Life Institute, Universite catholique de Louvain, Carnoy Croix du sud 4-5/L7.07.04, Louvain-la-Neuve 1348, Belgium

3
title: Direct Submission
author: Renoz, F.
author: Foray, V.
author: Ambroise, J.
author: Baa-Puyoulet, P.
author: Bearzatto, B.
author: Mendez, G.L.
author: Vanderpoorten, A.
author: Mahillon, J.
author: Gala, J.-L.
author: Calevro, F.
author: Hance, T.
journal: Submitted (01-APR-2020) Earth and Life Institute, Universite Catholique de Louvain, Carnoy Croix du Sud 4-5/L7.07.04, Louvain-la-Neuve 1348, Belgium

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54778:1
position: 54778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54778:1:source
so part of: sequence
organism: Serratia symbiotica
mol type: genomic DNA
strain: 24.1
host: Aphis fabae
plasmid: pSsAf24.1-2
country: Belgium:Wallonia
collection date: 2013

138074
type: Taxonomy
SIO_000068: taxonomy

GPZ83_RS00540
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: gshB
locus tag: GPZ83_RS00540
old locus tag: GPZ83_0000535
so part of: sequence
location: complement(join(54131..54778,1..303))
location: region:1-54778:-1
so has part: feature:1-303:-1:exon
so has part: feature:54131-54778:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54778:-1
position: 54778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-303:-1:exon

position:303:-1
position: 303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:54131-54778:-1:exon

position:54131:-1
position: 54131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GPZ83_RS00540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: gshB
locus tag: GPZ83_RS00540
old locus tag: GPZ83_0000535
EC number: 6.3.2.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019079014.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0004363 - glutathione synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutathione synthase
translation: MIKLGIVMDPIASINIKKDTSFAMLLEAQRRGWELHYMEMNDLYLHAGDGRACTRRLSVKENQESWYSFAAEQDLALQDLDVILMRKDPPFDTEYIYATYILERAEAKGTLVVNKPQSLRDCNEKLFTAWFPELTPDTLVSRRAAHIRNFHQRHGDIILKPLDGMGGASIFRVQQDDPNLSVIIETLTEHGKRFCMAQNFLPAIKEGDKRILVVDGEPVPYCLARIPAHGETRGNLAAGGHGEVRPLSESDWKIAHAVASTLKAKGLFFVGLDVIGDRLTEINVTSPTCAREIEAAFSVSITSLLMEAIEKRLAAK
SIO_010081: GPZ83_RS00540
subclass of: SO_0000673
so part of: GPZ83_RS00540
location: complement(join(54131..54778,1..303))
location: region:1-54778:-1
so has part: feature:1-303:-1:exon
so has part: feature:54131-54778:-1:exon

WP_160758694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-303:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54131-54778:-1:exon

GPZ83_RS00545
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: rsmE
locus tag: GPZ83_RS00545
old locus tag: GPZ83_0000540
so part of: sequence
location: complement(314..1045)
location: region:314-1045:-1
so has part: feature:314-1045:-1:exon
subclass of: SO_0000010

position:314:-1
position: 314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1045:-1
position: 1045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314-1045:-1:exon

GPZ83_RS00545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: rsmE
locus tag: GPZ83_RS00545
old locus tag: GPZ83_0000540
EC number: 2.1.1.193
inference: COORDINATES: similar to AA sequence:RefSeq:NP_311849.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
GO process: GO:0006364 - rRNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 16S rRNA (uracil(1498)-N(3))-methyltransferase
translation: MRIPRIYHPQPLTDYEEIALSAEAANHVGRVLRMSIGQALALFDGSNQVFDAKILQVDKKSVQVRLGAGRVEDLESPLNLHLGQVLSRGEKMEFTIQKSIELGVNVITPLFSERCGVVLSGERLIKKIQQWQKIAIAACEQCGRNRIPEIRAAMPLEAWCAEQDGSLKLNLHPCARHSINTLPLPVDHLRLLIGPEGGLSANEIAMTTGHGFTDILLGPRVLRTETTALTAITALQVRFGDLG
SIO_010081: GPZ83_RS00545
subclass of: SO_0000673
so part of: GPZ83_RS00545
location: complement(314..1045)
location: region:314-1045:-1
so has part: feature:314-1045:-1:exon

WP_040264226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314-1045:-1:exon

GPZ83_RS15430
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS15430
pseudo: true
so part of: sequence
location: 1372..>1539
location: region:1372-1539:1
so has part: feature:1372-1539:1:exon
subclass of: SO_0000010

position:1372:1
position: 1372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1539:1
position: 1539
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1372-1539:1:exon

GPZ83_RS15430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS15430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020884599.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
SIO_010081: GPZ83_RS15430
subclass of: SO_0000673
so part of: GPZ83_RS15430
location: 1372..>1539
location: region:1372-1539:1
so has part: feature:1372-1539:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1372-1539:1:exon

GPZ83_RS00550
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00550
old locus tag: GPZ83_0000545
pseudo: true
so part of: sequence
location: complement(<1536..>1649)
location: region:1536-1649:-1
so has part: feature:1536-1649:-1:exon
subclass of: SO_0000010

position:1536:-1
position: 1536
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1649:-1
position: 1649
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1536-1649:-1:exon

GPZ83_RS00550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00550
old locus tag: GPZ83_0000545
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005226772.1
GO function: GO:0016740 - transferase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: malonate decarboxylase subunit alpha
SIO_010081: GPZ83_RS00550
subclass of: SO_0000673
so part of: GPZ83_RS00550
location: complement(<1536..>1649)
location: region:1536-1649:-1
so has part: feature:1536-1649:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1536-1649:-1:exon

GPZ83_RS00555
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: lpxP
locus tag: GPZ83_RS00555
old locus tag: GPZ83_0000550
so part of: sequence
location: 1952..2872
location: region:1952-2872:1
so has part: feature:1952-2872:1:exon
subclass of: SO_0000010

position:1952:1
position: 1952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2872:1
position: 2872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1952-2872:1:exon

GPZ83_RS00555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: lpxP
locus tag: GPZ83_RS00555
old locus tag: GPZ83_0000550
EC number: 2.3.1.242
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004711175.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0008951 - palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity [Evidence IEA]
GO process: GO:0036104 - Kdo2-lipid A biosynthetic process [Evidence IEA]; GO:0009409 - response to cold [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: kdo(2)-lipid IV(A) palmitoleoyltransferase
translation: MKHPQKFQSALLHPRYWLTWFGLVSLFLLVQLPYPLLHRLGRWMGRSSMRFLKRRVSITHRNLELCFPDMDEAQRERKVVGNFESLGMGLMETGMAWFWSDKRVKRWFKATGIHHLKMAQQNQRGVLVIGVHFMSLELGGRAMGLCQPMMAMYRPHNNKAMEWAQTKGRMRSNKTMLDRKDLRGMVRALKHGEAVWFAPDQDYGPRGSVFAPLFAVEQAATTSGTFMLARMAKPAMVPVVLIRREKGRGYDLLIQPALEDYPLTDELAAAAYMNKVVEKEIMRAPEQYMWLHRRFKTRPLGSPPLY
SIO_010081: GPZ83_RS00555
subclass of: SO_0000673
so part of: GPZ83_RS00555
location: 1952..2872
location: region:1952-2872:1
so has part: feature:1952-2872:1:exon

WP_040264228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1952-2872:1:exon

GPZ83_RS00560
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00560
old locus tag: GPZ83_0000555
so part of: sequence
location: complement(3069..3230)
location: region:3069-3230:-1
so has part: feature:3069-3230:-1:exon
subclass of: SO_0000010

position:3069:-1
position: 3069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3230:-1
position: 3230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3069-3230:-1:exon

GPZ83_RS00560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00560
old locus tag: GPZ83_0000555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKFSKLLASALLAGTAFSAATAYVQAAPAPIQCQDDEIAVNVAGKWVCVKVK
SIO_010081: GPZ83_RS00560
subclass of: SO_0000673
so part of: GPZ83_RS00560
location: complement(3069..3230)
location: region:3069-3230:-1
so has part: feature:3069-3230:-1:exon

WP_160289780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3069-3230:-1:exon

GPZ83_RS15435
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS15435
so part of: sequence
location: complement(3827..4162)
location: region:3827-4162:-1
so has part: feature:3827-4162:-1:exon
subclass of: SO_0000010

position:3827:-1
position: 3827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4162:-1
position: 4162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3827-4162:-1:exon

GPZ83_RS15435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS15435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLAYIPPSAPVYLDLTGVRRNVALCIHPVGSERDGRVFGMQLHVDVGGAGNQRELVALAGIQPFALNADRPPGSLPAPASYHRHSEPVCRWAILHSGCWGGDSTLLNSGM
SIO_010081: GPZ83_RS15435
subclass of: SO_0000673
so part of: GPZ83_RS15435
location: complement(3827..4162)
location: region:3827-4162:-1
so has part: feature:3827-4162:-1:exon

WP_226020352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3827-4162:-1:exon

GPZ83_RS15440
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS15440
so part of: sequence
location: 4146..4367
location: region:4146-4367:1
so has part: feature:4146-4367:1:exon
subclass of: SO_0000010

position:4146:1
position: 4146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4367:1
position: 4367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4146-4367:1:exon

GPZ83_RS15440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS15440
inference: COORDINATES: protein motif:HMM:NF017412.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYANRIHLVASETGVGVNRGNLNARDGDITLDASGKLTLNNSLAQGSLSVNAADIALSGSHQSAQNVTLNSQG
SIO_010081: GPZ83_RS15440
subclass of: SO_0000673
so part of: GPZ83_RS15440
location: 4146..4367
location: region:4146-4367:1
so has part: feature:4146-4367:1:exon

WP_040264232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4146-4367:1:exon

GPZ83_RS15445
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS15445
so part of: sequence
location: 4368..4583
location: region:4368-4583:1
so has part: feature:4368-4583:1:exon
subclass of: SO_0000010

position:4368:1
position: 4368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4583:1
position: 4583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4368-4583:1:exon

GPZ83_RS15445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS15445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALNNTSVKAGQQIALNGGELALEQTTLSAAQDIRLSAAGLLRSTNSTLLAGTDVQGNLTATQRLAVTAGK
SIO_010081: GPZ83_RS15445
subclass of: SO_0000673
so part of: GPZ83_RS15445
location: 4368..4583
location: region:4368-4583:1
so has part: feature:4368-4583:1:exon

WP_040264234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4368-4583:1:exon

GPZ83_RS15450
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS15450
so part of: sequence
location: 4617..4871
location: region:4617-4871:1
so has part: feature:4617-4871:1:exon
subclass of: SO_0000010

position:4617:1
position: 4617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4871:1
position: 4871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4617-4871:1:exon

GPZ83_RS15450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS15450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAEALRGLVLDGGSQLTGLSGVTLQGGALNLAGKASSGGDFTVQGASLQSAASSVLSAQQDLHFTFSGNADWLGQLTAGRDLA
SIO_010081: GPZ83_RS15450
subclass of: SO_0000673
so part of: GPZ83_RS15450
location: 4617..4871
location: region:4617-4871:1
so has part: feature:4617-4871:1:exon

WP_040264236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4617-4871:1:exon

GPZ83_RS00570
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: zur
locus tag: GPZ83_RS00570
old locus tag: GPZ83_0000565
so part of: sequence
location: 5415..5927
location: region:5415-5927:1
so has part: feature:5415-5927:1:exon
subclass of: SO_0000010

position:5415:1
position: 5415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5927:1
position: 5927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5415-5927:1:exon

GPZ83_RS00570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: zur
locus tag: GPZ83_RS00570
old locus tag: GPZ83_0000565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002214647.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc uptake transcriptional repressor Zur
translation: MNSTTQENLLAQAEQLCRQRNVRLTPQRLEVLRLMSQQPGAISAYDLLDLLRIAEPQAKPPTVYRALDFLMDQGFIHRVESANSYILCHHFGQPMHTSALFICDRCSQVTERTTEDVEKTLQKLAKESGFALRHSVVEAHGLCTGCVEVEACDSKHDCGEHDHSIAIKRK
SIO_010081: GPZ83_RS00570
subclass of: SO_0000673
so part of: GPZ83_RS00570
location: 5415..5927
location: region:5415-5927:1
so has part: feature:5415-5927:1:exon

WP_006708067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5415-5927:1:exon

GPZ83_RS00575
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: dinF
locus tag: GPZ83_RS00575
old locus tag: GPZ83_0000570
so part of: sequence
location: complement(6105..7445)
location: region:6105-7445:-1
so has part: feature:6105-7445:-1:exon
subclass of: SO_0000010

position:6105:-1
position: 6105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7445:-1
position: 7445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6105-7445:-1:exon

GPZ83_RS00575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: dinF
locus tag: GPZ83_RS00575
old locus tag: GPZ83_0000570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015379224.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MATE family efflux transporter DinF
translation: MHLISAFTSDTDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPIYLGGVAIGTMVSNFLFMLLLFLRMSTTGLAAQALGAQSQQRLARAFMQPLLLALLTGLAMVLLRHPLIDLALRIVGGNVKVLEQARLFLDIRWLSAPAVLVNMVLLGWLLGVQHVRAPVIFLIVGNLLNIVLDIWLVMGLGWKVQGAAMATAISEYATLLLGLGLAWRVMRMRGISLLMLQQAWRGNLRRLLALNRDIMLRSLLLQLCFASLTLFAARLGSEVVAVNVVLMNLLAFSAYALDGFAYAVEAHSGHAYGARDDSQLKKIWHAACRQACLVALAFAVLYFLAGQQIVAALTSLHELRALAHHYLLWQVVLPLVGVWCYLLDGMFIGASRGAEMRNSMAVAAVGYVLTLFSVPWLGNHGLWLALAVFLILRGLTLGWRWHLHRVHGSWFAAPE
SIO_010081: GPZ83_RS00575
subclass of: SO_0000673
so part of: GPZ83_RS00575
location: complement(6105..7445)
location: region:6105-7445:-1
so has part: feature:6105-7445:-1:exon

WP_160744653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6105-7445:-1:exon

GPZ83_RS00580
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: lexA
locus tag: GPZ83_RS00580
old locus tag: GPZ83_0000575
so part of: sequence
location: complement(7558..8166)
location: region:7558-8166:-1
so has part: feature:7558-8166:-1:exon
subclass of: SO_0000010

position:7558:-1
position: 7558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8166:-1
position: 8166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7558-8166:-1:exon

GPZ83_RS00580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: lexA
locus tag: GPZ83_RS00580
old locus tag: GPZ83_0000575
EC number: 3.4.21.88
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015869689.1
GO function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional repressor LexA
translation: MKALTTRQQEVYELIRDHILQTGMPPTRAEIAMRLGFRSPNAAEEHLKALARKGVIEIISGASRGIRLLMEDEAGLPLIGGVAAGEPLLAQQHIEGHYKVDPSLFKPNADFLLRVIGMSMRDIGILDGDLLAVHKTQDVRNGQVIVARIEDEVTVKRLKKSGNMVELLPENNEFQPIVVDLRQQNFTIEGLAVGVIRNGDWI
SIO_010081: GPZ83_RS00580
subclass of: SO_0000673
so part of: GPZ83_RS00580
location: complement(7558..8166)
location: region:7558-8166:-1
so has part: feature:7558-8166:-1:exon

WP_040264241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7558-8166:-1:exon

GPZ83_RS00585
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00585
old locus tag: GPZ83_0000580
so part of: sequence
location: complement(8266..8634)
location: region:8266-8634:-1
so has part: feature:8266-8634:-1:exon
subclass of: SO_0000010

position:8266:-1
position: 8266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8634:-1
position: 8634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8266-8634:-1:exon

GPZ83_RS00585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00585
old locus tag: GPZ83_0000580
EC number: 2.7.1.107
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013814749.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: diacylglycerol kinase
translation: MANQATSLTRIIKAAGYSYKGLAAVWRHEAAFRQELVVAMLAIILAIWLNVGAIARILLIGSVVLVLIVEILNSAIEAVIDRVGSEYHELSGRAKDMGAAAVLLAIVLALFVWGSILLQHFI
SIO_010081: GPZ83_RS00585
subclass of: SO_0000673
so part of: GPZ83_RS00585
location: complement(8266..8634)
location: region:8266-8634:-1
so has part: feature:8266-8634:-1:exon

WP_160744654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8266-8634:-1:exon

GPZ83_RS00590
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: plsB
locus tag: GPZ83_RS00590
old locus tag: GPZ83_0000585
so part of: sequence
location: 8779..11244
location: region:8779-11244:1
so has part: feature:8779-11244:1:exon
subclass of: SO_0000010

position:8779:1
position: 8779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11244:1
position: 11244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8779-11244:1:exon

GPZ83_RS00590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: plsB
locus tag: GPZ83_RS00590
old locus tag: GPZ83_0000585
EC number: 2.3.1.15
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015379226.1
GO function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IEA]
GO process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycerol-3-phosphate 1-O-acyltransferase PlsB
translation: MSGWRKIYYKLLNLPLKLLVRSKVIPSDPVRELGLDPSRPILYVLPYNSKTDLLTLRTQCLEQDLPDPLDLLEIDGTVLPSHVFIHDGPRLFRYYTPKEESVKLFHDYLDLHRSNPRLNIQMLPVSVMFGRSPGREGQGTPHLRLLNGVQKLLAVLWLGRDSFVRFSNTVSLRRMASEYGTDKAIAQKLARVARMHFSRQRLAAVGPSLPARQDLFNKLLASKAIEKAVEDEAHSKKISLDKARQNAIVLMEEIAADFSYEAVRLSDRVLSWTWNRLYQGINVTNAERVRQLAQDGHEIVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFTRGYSVEYFVEGGRSRTGRLLEPKTGTLSMTIQAMLRGGTRPITLVPIYIGYEHVMEVGTYAKELRGATKEKEGLLQMLRGLRKLRNLGQGYVNFGDPLPLTAYLNQHVPQWRESIDPIEAQRPSWMTPTVNDLAEKIMVRINNAAAANAVNLCSTALLASRQHSLTREQLLEQLECYLQLMRNVPYAHDVTVPAQTPDELLDHALSMNKFAVEQDNIGDIIILPREQAVLMTYYRNNIHHLLVLPSLIATIVMHHRKVSRSELLRQIDLIYPMLKAELFLHYEKEQLAEVLQPLINEMIRQQLICGKNEDLVLNPARIRPLQLLAAGVRETLQRYAITMSVLSTNPSINRGALEKESRIMAQRLSMLHGINAPEFFDKAVFATLVATLREEGYINDIGDAIREPTLEVYTMLSDLITPEIRLTIESVSMPVEINAQHEAATEEAKED
SIO_010081: GPZ83_RS00590
subclass of: SO_0000673
so part of: GPZ83_RS00590
location: 8779..11244
location: region:8779-11244:1
so has part: feature:8779-11244:1:exon

WP_040264246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8779-11244:1:exon

GPZ83_RS00595
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: ubiA
locus tag: GPZ83_RS00595
old locus tag: GPZ83_0000590
so part of: sequence
location: complement(11443..12267)
location: region:11443-12267:-1
so has part: feature:11443-12267:-1:exon
subclass of: SO_0000010

position:11443:-1
position: 11443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12267:-1
position: 12267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11443-12267:-1:exon

GPZ83_RS00595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: ubiA
locus tag: GPZ83_RS00595
old locus tag: GPZ83_0000590
EC number: 2.5.1.39
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006708061.1
GO function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
GO process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxybenzoate octaprenyltransferase
translation: MRIDKPIGSLLLLWPTLWALWLAGQGVPPLSILLVFVLGVFLMRAAGCVVNDYADRAIDGHVKRTAERPMPSGQVSEKEAKVLFVALVLISFGLVLTLNAMTIWLSLAALALAWIYPLMKRVTNLPQFVLGTAFGWGIPMAYAAVSESLPLSCWLLLLANICWTVAYDTLYAMVDRDDDLKIGIKSTAILFGRYDKQIVGVLQFAALLLLLWVGYLAQLGEVFYGALLLVGVLFIHQQKQIATREREACFKAFLHNNYVGLVVFIGIALSYLTT
SIO_010081: GPZ83_RS00595
subclass of: SO_0000673
so part of: GPZ83_RS00595
location: complement(11443..12267)
location: region:11443-12267:-1
so has part: feature:11443-12267:-1:exon

WP_237162974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11443-12267:-1:exon

GPZ83_RS00600
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: ubiC
locus tag: GPZ83_RS00600
old locus tag: GPZ83_0000595
so part of: sequence
location: complement(12335..12838)
location: region:12335-12838:-1
so has part: feature:12335-12838:-1:exon
subclass of: SO_0000010

position:12335:-1
position: 12335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12838:-1
position: 12838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12335-12838:-1:exon

GPZ83_RS00600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: ubiC
locus tag: GPZ83_RS00600
old locus tag: GPZ83_0000595
EC number: 4.1.3.40
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006708060.1
GO function: GO:0008813 - chorismate lyase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chorismate lyase
translation: MSGNKDSILPPLEWLFDQYPPLPAAISDWLMELGSMTCRFERHCTRVHIELQREYFLTRDQLGEEAEYLPDSPRYWLREIVLLGDNQPWLLGRTVIPQETLTGPEQVLVDLGTQPLGRYLFNSGNMTRDYIHIGRQNALWARRSRLRLAGKPLLLTELFLPASPLYV
SIO_010081: GPZ83_RS00600
subclass of: SO_0000673
so part of: GPZ83_RS00600
location: complement(12335..12838)
location: region:12335-12838:-1
so has part: feature:12335-12838:-1:exon

WP_160744655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12335-12838:-1:exon

GPZ83_RS00605
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: pgi
locus tag: GPZ83_RS00605
old locus tag: GPZ83_0000600
so part of: sequence
location: complement(13126..14772)
location: region:13126-14772:-1
so has part: feature:13126-14772:-1:exon
subclass of: SO_0000010

position:13126:-1
position: 13126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14772:-1
position: 14772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13126-14772:-1:exon

GPZ83_RS00605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: pgi
locus tag: GPZ83_RS00605
old locus tag: GPZ83_0000600
EC number: 5.3.1.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004705333.1
GO function: GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
GO process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-6-phosphate isomerase
translation: MKSINPTQTAAWQALQQHFAQMKDVRIADLFTQDSERFSKFSATFNDQMLVDYSKNRITVETLEKLQALAKETDLQGAIASMFAGEKINRTEDRAVLHIALRNRSNSPILVDGKDVMPEVNAVLVKMKRFCVRVISGDWKGYTGKPITDVVNIGIGGSDLGPYMVTEALRPYKNHLNMHFISNVDGTHIAETLKPLNPETTLFLVASKTFTTQETMTNAHSARDWLLNNASDQQHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIALSVGYDNFEQLLSGAHAMDKHFAKTPLEQNLPVLLALIGIWYNNFFGAETEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNLVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNPLSDHHAKLLSNFFAQTEALAFGKSLEVVEAEFTAEGKKPEDVKHVAPFKVFEGNCPTNSILLREITPFSLGSLIALYEHKIFTQGAILNIFSFDQWGVELGKQLANRILPELAGNEKVNSHDSSTNALINRFKEWR
SIO_010081: GPZ83_RS00605
subclass of: SO_0000673
so part of: GPZ83_RS00605
location: complement(13126..14772)
location: region:13126-14772:-1
so has part: feature:13126-14772:-1:exon

WP_040264252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13126-14772:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 138074
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00168
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: lysine
so part of: sequence
location: 14986..15179
location: region:14986-15179:1
so has part: feature:14986-15179:1:region

position:14986:1
position: 14986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15179:1
position: 15179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14986-15179:1:region

GPZ83_RS00610
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: lysC
locus tag: GPZ83_RS00610
old locus tag: GPZ83_0000605
so part of: sequence
location: 15289..16656
location: region:15289-16656:1
so has part: feature:15289-16656:1:exon
subclass of: SO_0000010

position:15289:1
position: 15289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16656:1
position: 16656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15289-16656:1:exon

GPZ83_RS00610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: lysC
locus tag: GPZ83_RS00610
old locus tag: GPZ83_0000605
EC number: 2.7.2.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015962105.1
GO function: GO:0004072 - aspartate kinase activity [Evidence IEA]
GO process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysine-sensitive aspartokinase 3
translation: MIQAVPQNSTVVAKFGGTSVADFAAMNRSADIVLANPQVRLVVLSASAGITNLLVALAEGCDADNRNCRLDEIRRIQYTILDRLNAPDASRKEIDRMLENIAMLSEAAALATSPALTDELVSHGELMSTLLFVDILRARNVQAEWFDVRKVMRTDDHFGRAVPDSTALRELTQTMLKPCLQKALVVTQGFIGSDPKGRTTTLGRGGSDYTAALLGEALHVSQIDIWTDVPGIYTTDPRVVPLAKRIDRITFEEAAEMATFGAKVLHPATLLPAVRNDIPVFVGSSKEPAAGGTLVCNTTEDLPLFRALALRRKQTLLTLHSLNMLHARGFLAEVFNILARHNISVDLITTSEVSVALTMDTTGSTSISGNLLTTSLLTELSSLCRTEVEENLALVALIGNKLSQACGVGKEVFGVLDPFNIRMICYGASSYNLCFLVPGDDADQVVRTLHHNLFE
SIO_010081: GPZ83_RS00610
subclass of: SO_0000673
so part of: GPZ83_RS00610
location: 15289..16656
location: region:15289-16656:1
so has part: feature:15289-16656:1:exon

WP_006708058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15289-16656:1:exon

GPZ83_RS00615
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00615
old locus tag: GPZ83_0000610
so part of: sequence
location: complement(16729..18351)
location: region:16729-18351:-1
so has part: feature:16729-18351:-1:exon
subclass of: SO_0000010

position:16729:-1
position: 16729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18351:-1
position: 18351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16729-18351:-1:exon

GPZ83_RS00615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00615
old locus tag: GPZ83_0000610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013200333.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Na/Pi cotransporter family protein
translation: MLTLLHLLSSVALLVWGTHIVRTGIMRVYGTNLRRILSDSIEKKPLAFISGIGVTALVQSSNATALLVTSFVAQGLVGLAPALVIMLGADVGTALMARVLTFDLSWLSPLLILVGVFLFLSRKQTRIGQMGRVSIGLGLIILALELIVAAATPITQASGVKVLFSSLTGDVMLDSLTGALFAIVSYSSLAAVLLTATLTASGVISLKVALCLVIGANLGSGLLAVITTSGQNAAGRRVALGSLLFKLLGCVLVLPFVVYLADMMSRVPGSNKELVIYFHVFYNLIRCLVLIPLTGPMAKLCDMLIADVAADDPRLRPRHLDASALDTPTLALANAARETLRMGDVVEHMMILQREVLHGKRGQDKEVRRLDDDVDVLYTAIKLYLAQIQKEDLGEEDSRRWAEIIEMALNLEQAGDIIERMAGDVAAKSYAVRRAFSTEGLAELDALHERLIDNLRLSLSVFLSGDIASAKRLRRSKHRFRILDRRYAHAHVDRLHQQNVQSIETSSLHLGLLGDMKRLNSLFCAVAYNVLDQDEKDARS
SIO_010081: GPZ83_RS00615
subclass of: SO_0000673
so part of: GPZ83_RS00615
location: complement(16729..18351)
location: region:16729-18351:-1
so has part: feature:16729-18351:-1:exon

WP_160744656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16729-18351:-1:exon

GPZ83_RS00620
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: metA
locus tag: GPZ83_RS00620
old locus tag: GPZ83_0000615
so part of: sequence
location: complement(18605..19534)
location: region:18605-19534:-1
so has part: feature:18605-19534:-1:exon
subclass of: SO_0000010

position:18605:-1
position: 18605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19534:-1
position: 19534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18605-19534:-1:exon

GPZ83_RS00620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: metA
locus tag: GPZ83_RS00620
old locus tag: GPZ83_0000615
EC number: 2.3.1.46
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015841906.1
GO function: GO:0008899 - homoserine O-succinyltransferase activity [Evidence IEA]
GO process: GO:0009086 - methionine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: homoserine O-succinyltransferase
translation: MPIRVPDELPAVSFLRNENVFVMTSSRAKTQEIRPLKVLILNLMPKKIETENQFLRLLSNSPLQIDIQLLRIDSRESRNTPTEHLNNFYCNFEDIQQENFDGLIITGAPLGLVDFCDVAYWPQIERIINWAKNHVTSTLFVCWAVQAALNILYGIPKMTREVKISGVYQHQTLQQHALLTRGFDETFLALHARYADFPTEIIGQYTDLDILAESEQTGVYLFASKDKRLAFVTGHPEYDALTLASEYFRDNDAGLNPALPLNYFPGDNLERIPKATWRSHGHLLFSNWLNYYVYQITPFDLRHMTPTFE
SIO_010081: GPZ83_RS00620
subclass of: SO_0000673
so part of: GPZ83_RS00620
location: complement(18605..19534)
location: region:18605-19534:-1
so has part: feature:18605-19534:-1:exon

WP_160744657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18605-19534:-1:exon

GPZ83_RS00625
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: rrf
locus tag: GPZ83_RS00625
old locus tag: GPZ83_0000620
so part of: sequence
location: complement(19958..20073)
location: region:19958-20073:-1
so has part: feature:19958-20073:-1:exon
subclass of: SO_0000573

position:19958:-1
position: 19958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20073:-1
position: 20073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19958-20073:-1:exon

GPZ83_RS00625
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 138074
gene: rrf
locus tag: GPZ83_RS00625
old locus tag: GPZ83_0000620
product: 5S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00001
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: GPZ83_RS00625
subclass of: SO_0000673
so part of: GPZ83_RS00625
location: complement(19958..20073)
location: region:19958-20073:-1
so has part: feature:19958-20073:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19958-20073:-1:exon

GPZ83_RS00630
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00630
old locus tag: GPZ83_0000625
so part of: sequence
location: complement(20180..23091)
location: region:20180-23091:-1
so has part: feature:20180-23091:-1:exon
subclass of: SO_0000573

position:20180:-1
position: 20180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23091:-1
position: 23091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20180-23091:-1:exon

GPZ83_RS00630
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 138074
locus tag: GPZ83_RS00630
old locus tag: GPZ83_0000625
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: GPZ83_RS00630
subclass of: SO_0000673
so part of: GPZ83_RS00630
location: complement(20180..23091)
location: region:20180-23091:-1
so has part: feature:20180-23091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20180-23091:-1:exon

GPZ83_RS00635
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00635
old locus tag: GPZ83_0000630
so part of: sequence
location: complement(23307..23382)
location: region:23307-23382:-1
so has part: feature:23307-23382:-1:exon
subclass of: SO_0000663

position:23307:-1
position: 23307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23382:-1
position: 23382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23307-23382:-1:exon

GPZ83_RS00635
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 138074
locus tag: GPZ83_RS00635
old locus tag: GPZ83_0000630
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(23346..23348),aa:Glu,seq:ttc)
SIO_010081: GPZ83_RS00635
subclass of: SO_0000673
so part of: GPZ83_RS00635
location: complement(23307..23382)
location: region:23307-23382:-1
so has part: feature:23307-23382:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23307-23382:-1:exon

GPZ83_RS00640
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00640
old locus tag: GPZ83_0000635
so part of: sequence
location: complement(23572..25113)
location: region:23572-25113:-1
so has part: feature:23572-25113:-1:exon
subclass of: SO_0000573

position:23572:-1
position: 23572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25113:-1
position: 25113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23572-25113:-1:exon

GPZ83_RS00640
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 138074
locus tag: GPZ83_RS00640
old locus tag: GPZ83_0000635
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: GPZ83_RS00640
subclass of: SO_0000673
so part of: GPZ83_RS00640
location: complement(23572..25113)
location: region:23572-25113:-1
so has part: feature:23572-25113:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23572-25113:-1:exon

GPZ83_RS00645
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: hemG
locus tag: GPZ83_RS00645
old locus tag: GPZ83_0000640
so part of: sequence
location: complement(25482..26048)
location: region:25482-26048:-1
so has part: feature:25482-26048:-1:exon
subclass of: SO_0000010

position:25482:-1
position: 25482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26048:-1
position: 26048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25482-26048:-1:exon

GPZ83_RS00645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: hemG
locus tag: GPZ83_RS00645
old locus tag: GPZ83_0000640
EC number: 1.3.5.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006709205.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: menaquinone-dependent protoporphyrinogen IX dehydrogenase
translation: MKALILYSGRDGQTLSIASYIASKLQDRLRCEVIDLLQAENVDLSQYQQVMIGASIRYGHFNSALDKFVKHRAEQLNQMPSAFFAVNLTARKPEKRSPQTNVYTRKFLLASPWQPKQCMVFAGALRYPRYRWFDRIMIQFIMCMTGGETDTSKEVEYTDWQQVERFAQEFSQIKYEKRPKFVTFTPLA
SIO_010081: GPZ83_RS00645
subclass of: SO_0000673
so part of: GPZ83_RS00645
location: complement(25482..26048)
location: region:25482-26048:-1
so has part: feature:25482-26048:-1:exon

WP_040264179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25482-26048:-1:exon

GPZ83_RS00650
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: trkH
locus tag: GPZ83_RS00650
old locus tag: GPZ83_0000645
so part of: sequence
location: complement(26072..27523)
location: region:26072-27523:-1
so has part: feature:26072-27523:-1:exon
subclass of: SO_0000010

position:26072:-1
position: 26072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27523:-1
position: 27523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26072-27523:-1:exon

GPZ83_RS00650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: trkH
locus tag: GPZ83_RS00650
old locus tag: GPZ83_0000645
inference: COORDINATES: similar to AA sequence:RefSeq:NP_312804.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Trk system potassium transporter TrkH
translation: MHFRAITRIVGLLVILFSGTMFIPGLVALIYRDGAGRAFSQTFFVAVTIGLILWWPNRKKKHELKPREGFLIVVLFWTVLGSVGALPFLFSDRPNLSLTDAFFESFSGLTTTGATMLVGLDSLPKAILFYRQMLQWMGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVWLTVACAVALWGAGMPVFDAISHSFSTIAIGGFSTHDASIGYYASPTINTIIAIFLLISGCNYGLHFALLSGRSLKVYGRDPEFRMFILVQLTLVAVSTLVLWEHGVYKTGMETLNQAFFQVVSMATTAGFTTDSIAKWPLFLPMLLLCSAFIGGCAGSTGGGMKVVRMLLLYLQGSRELKRLVHPNAVYTIKLGNRALPERILDAVWGFFSAYALVFIVSMLAIIATGVDNFSAFAAVTASLNNLGPGLGVVADNFTAMPPVAKWILVVTMLFGRLEVFTLLVLFTPTFWRE
SIO_010081: GPZ83_RS00650
subclass of: SO_0000673
so part of: GPZ83_RS00650
location: complement(26072..27523)
location: region:26072-27523:-1
so has part: feature:26072-27523:-1:exon

WP_160744713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26072-27523:-1:exon

GPZ83_RS00655
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: pepQ
locus tag: GPZ83_RS00655
old locus tag: GPZ83_0000650
so part of: sequence
location: complement(27877..29208)
location: region:27877-29208:-1
so has part: feature:27877-29208:-1:exon
subclass of: SO_0000010

position:27877:-1
position: 27877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29208:-1
position: 29208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27877-29208:-1:exon

GPZ83_RS00655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: pepQ
locus tag: GPZ83_RS00655
old locus tag: GPZ83_0000650
EC number: 3.4.13.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002211547.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Xaa-Pro dipeptidase
translation: MATLASLYNDHLAEWQKRTREVLKRHALDALLIHSGELQKVFRDDRSYPFKVNVNFKAWVPITAVPNCWLWVDGVNKPKLWFYSPIDYWHSVESLPDSFWSASFEMMLLANADDIAQQLPAQRGRVGYIGYAPQRARDLGIVSENVNPQAVLNYLDFHRSIKTGYELACMREAQKTAVMGHRAAHEAFLSGMSEFDINLAYLTATGHRDTDVPYDNIVALNEHASVLHYTKLDHQPPAETLSFLIDAGAEYNGYVADLTRTYAVHGSSEFACLVKDLNNEQLALIATVKAGMHYTDYHVQMHQRIAKLLKSYQLVSGISEDTMVEQGLTTPFLPHGLGHLLGLQVHDAAGFMQDEHGTHLAAPSKYPFLRCTRVLQPGMVLTIEPGLYFIESLLAPWRSGEFSRHFAWDRINALKPYGGIRIEDNIVIHEQRIENMTRDLNLA
SIO_010081: GPZ83_RS00655
subclass of: SO_0000673
so part of: GPZ83_RS00655
location: complement(27877..29208)
location: region:27877-29208:-1
so has part: feature:27877-29208:-1:exon

WP_160758690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27877-29208:-1:exon

GPZ83_RS00660
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: fre
locus tag: GPZ83_RS00660
old locus tag: GPZ83_0000655
so part of: sequence
location: complement(29576..30277)
location: region:29576-30277:-1
so has part: feature:29576-30277:-1:exon
subclass of: SO_0000010

position:29576:-1
position: 29576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30277:-1
position: 30277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29576-30277:-1:exon

GPZ83_RS00660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: fre
locus tag: GPZ83_RS00660
old locus tag: GPZ83_0000655
EC number: 1.5.1.41
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004167939.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H-flavin reductase
translation: MAILSCKVTSVEAITDTVYRVRLVPKMPFSFKAGQYLMVVMDECDRRPFSLASTPSQQEYIELHIGASELNLYAMAVMEHILKEQAITVDIPHGDAWLREEGNRPLVLIAGGTGFSYVRSILLTALEQQPDRDISIYWGGRELKHLYDQSELEALSQQHPHLKVIPVVEQPTDEWHGRSGTVLSAVLQDFATLADHDIYIAGRFEMAKIARERFCTERGAQEAHVFGDAFSFI
SIO_010081: GPZ83_RS00660
subclass of: SO_0000673
so part of: GPZ83_RS00660
location: complement(29576..30277)
location: region:29576-30277:-1
so has part: feature:29576-30277:-1:exon

WP_160758691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29576-30277:-1:exon

GPZ83_RS00665
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: ubiD
locus tag: GPZ83_RS00665
old locus tag: GPZ83_0000660
so part of: sequence
location: complement(30328..31824)
location: region:30328-31824:-1
so has part: feature:30328-31824:-1:exon
subclass of: SO_0000010

position:30328:-1
position: 30328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31824:-1
position: 31824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30328-31824:-1:exon

GPZ83_RS00665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: ubiD
locus tag: GPZ83_RS00665
old locus tag: GPZ83_0000660
EC number: 4.1.1.98
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016929443.1
GO function: GO:0016831 - carboxy-lyase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxy-3-polyprenylbenzoate decarboxylase
translation: MACMKYRDLRDFLSLLEKRGELKRISQLIDPYLEMTEIADRTLRAGGPALLFENPKGYDMPVLCNLFGTAKRVVMGMGQEDINALREVGKLLAFLKEPEPPKGFRDLFAKMPKFKQVLNMPTKVLGSAPCQQQVWQGDDVDLSRIPVMHCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQVLGKNKVIMRWLSHRGGALDYQEWCQAHPGERFPVAVVLGADPATILGAVTPVPDTLSEYAFAGLLRGSKTEVVTCLSCDLDVPASAEIVLEGYIEPGEMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRRDAIYHSTYTGRPPDEPAILGVALNEVFVPLLQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAMTTRMDPARDIVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETEREWGRPIRMDEKVRARVDEIWDELAIFTGREPTL
SIO_010081: GPZ83_RS00665
subclass of: SO_0000673
so part of: GPZ83_RS00665
location: complement(30328..31824)
location: region:30328-31824:-1
so has part: feature:30328-31824:-1:exon

WP_040264187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30328-31824:-1:exon

GPZ83_RS00670
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00670
old locus tag: GPZ83_0000665
pseudo: true
so part of: sequence
location: 32806..>32991
location: region:32806-32991:1
so has part: feature:32806-32991:1:exon
subclass of: SO_0000010

position:32806:1
position: 32806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32991:1
position: 32991
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32806-32991:1:exon

GPZ83_RS00670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00670
old locus tag: GPZ83_0000665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS1 family transposase
SIO_010081: GPZ83_RS00670
subclass of: SO_0000673
so part of: GPZ83_RS00670
location: 32806..>32991
location: region:32806-32991:1
so has part: feature:32806-32991:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32806-32991:1:exon

GPZ83_RS00675
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00675
old locus tag: GPZ83_0000670
so part of: sequence
location: complement(33650..33982)
location: region:33650-33982:-1
so has part: feature:33650-33982:-1:exon
subclass of: SO_0000010

position:33650:-1
position: 33650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33982:-1
position: 33982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33650-33982:-1:exon

GPZ83_RS00675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00675
old locus tag: GPZ83_0000670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015344010.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YceK/YidQ family lipoprotein
translation: MATIKLIVASCMLLATSGCSSVMSHTGSNQGYYPGTRACVDMLKSDNTSWVMMPLVALDLPFSALVDTILLPYDYLNSGNDGTADSPKARILHGEEPNLATPHSTDSATY
SIO_010081: GPZ83_RS00675
subclass of: SO_0000673
so part of: GPZ83_RS00675
location: complement(33650..33982)
location: region:33650-33982:-1
so has part: feature:33650-33982:-1:exon

WP_006709137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33650-33982:-1:exon

GPZ83_RS00680
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00680
old locus tag: GPZ83_0000675
pseudo: true
so part of: sequence
location: complement(34343..>35028)
location: region:34343-35028:-1
so has part: feature:34343-35028:-1:exon
subclass of: SO_0000010

position:34343:-1
position: 34343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35028:-1
position: 35028
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34343-35028:-1:exon

GPZ83_RS00680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00680
old locus tag: GPZ83_0000675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611197.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: GPZ83_RS00680
subclass of: SO_0000673
so part of: GPZ83_RS00680
location: complement(34343..>35028)
location: region:34343-35028:-1
so has part: feature:34343-35028:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34343-35028:-1:exon

GPZ83_RS00685
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00685
old locus tag: GPZ83_0000680
so part of: sequence
location: complement(35184..36455)
location: region:35184-36455:-1
so has part: feature:35184-36455:-1:exon
subclass of: SO_0000010

position:35184:-1
position: 35184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36455:-1
position: 36455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35184-36455:-1:exon

GPZ83_RS00685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00685
old locus tag: GPZ83_0000680
EC number: 2.6.1.66
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006322873.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: valine--pyruvate transaminase
translation: MTFSLFGDKFTRYTGITRLMNDLNEGLRTPGAIMLGGGNPAQIPEMESYFKQLCQDMLDQGKLSEVLCNYDGPQGKDALLKALANLLCDELGWQISPQNIVLTNGSQSAFFYLFNLFAGRYANGSCRRVLFPLTPEYIGYADVGLEEELFVSAKPNIELLPEGQFKYHVDFEHLSIGDDIGMICVSRPTNPTGNVITDEELMKLDLLAQQRNIPLVIDNAYGVPFPSIIFSEATPLWNSNIILCMSLSKLGLPGLRCGIVIADEKVISALTNMNGIISLSPGSMGPAMAIEMIERGDLLRLSKTVIRPFYKQRLEHTIETIRRYLSPERCLIHKPEGAIFLWLWFKDLPITTEVLYQRLKKRGVLMVPGHYFFPGLEHEWSHTHQCMRMNYVPEAEKIERGVAILAEEIERAHKEAGFGVPAL
SIO_010081: GPZ83_RS00685
subclass of: SO_0000673
so part of: GPZ83_RS00685
location: complement(35184..36455)
location: region:35184-36455:-1
so has part: feature:35184-36455:-1:exon

WP_040264257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35184-36455:-1:exon

GPZ83_RS00690
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00690
old locus tag: GPZ83_0000685
pseudo: true
so part of: sequence
location: complement(<37032..37127)
location: region:37032-37127:-1
so has part: feature:37032-37127:-1:exon
subclass of: SO_0000010

position:37032:-1
position: 37032
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:37127:-1
position: 37127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37032-37127:-1:exon

GPZ83_RS00690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00690
old locus tag: GPZ83_0000685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016929586.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: sugar kinase
SIO_010081: GPZ83_RS00690
subclass of: SO_0000673
so part of: GPZ83_RS00690
location: complement(<37032..37127)
location: region:37032-37127:-1
so has part: feature:37032-37127:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37032-37127:-1:exon

GPZ83_RS00695
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00695
old locus tag: GPZ83_0000690
pseudo: true
so part of: sequence
location: complement(37199..37949)
location: region:37199-37949:-1
so has part: feature:37199-37949:-1:exon
subclass of: SO_0000010

position:37199:-1
position: 37199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37949:-1
position: 37949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37199-37949:-1:exon

GPZ83_RS00695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00695
old locus tag: GPZ83_0000690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006321735.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: sugar phosphate isomerase/epimerase
SIO_010081: GPZ83_RS00695
subclass of: SO_0000673
so part of: GPZ83_RS00695
location: complement(37199..37949)
location: region:37199-37949:-1
so has part: feature:37199-37949:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37199-37949:-1:exon

GPZ83_RS00700
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00700
old locus tag: GPZ83_0000695
so part of: sequence
location: 38973..39719
location: region:38973-39719:1
so has part: feature:38973-39719:1:exon
subclass of: SO_0000010

position:38973:1
position: 38973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39719:1
position: 39719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38973-39719:1:exon

GPZ83_RS00700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00700
old locus tag: GPZ83_0000695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012004539.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR family transcriptional regulator
translation: MSNSFFSDEIINTSIKNKLEKELSEYSNIKYAYAIMNKNNPTNFSIISNRTEWFEFYIKNNYQFIDPVLITASHRITPFTWDKDLTFSSGIKLPKVFVMAKNYNILNGYTFVLHDNNHNLVVLSIMLDKCCDDNIGEQIENNKDKIQMLLLTTHEELTANYQRVNTPTDFEKMNQREIFSKRENEIIYWASMGKSYQEIALILGIKLTTVKYHIGNVVKKLGVTNAKHAIRLSIELQLIRPLLTDGEG
SIO_010081: GPZ83_RS00700
subclass of: SO_0000673
so part of: GPZ83_RS00700
location: 38973..39719
location: region:38973-39719:1
so has part: feature:38973-39719:1:exon

WP_160758692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38973-39719:1:exon

GPZ83_RS00705
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00705
old locus tag: GPZ83_0000700
so part of: sequence
location: complement(39678..40343)
location: region:39678-40343:-1
so has part: feature:39678-40343:-1:exon
subclass of: SO_0000010

position:39678:-1
position: 39678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40343:-1
position: 40343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39678-40343:-1:exon

GPZ83_RS00705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00705
old locus tag: GPZ83_0000700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006322895.1
GO function: GO:0016740 - transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-homoserine-lactone synthase
translation: MMKFYDVGYNLLSNNRSKELFSLRKKTFKDRLDWIVNCENSMEFDEYDSHHTTYIFGVYQDHVICSLRFIETKYPNMISCGEFNAYFNNKITLPAGNYVEASRLFIDKERVRTLDLGQQPISSILFLSMINFARNFGYQGIYAIISHAMRIIFQRSGWDISVVERGCSEKNKNIYLVYMPLDDDNQHRMIERITHQAFLSGNPLDSWPLSFPISEKRPDQL
SIO_010081: GPZ83_RS00705
subclass of: SO_0000673
so part of: GPZ83_RS00705
location: complement(39678..40343)
location: region:39678-40343:-1
so has part: feature:39678-40343:-1:exon

WP_040264196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39678-40343:-1:exon

GPZ83_RS00710
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: glyQ
locus tag: GPZ83_RS00710
old locus tag: GPZ83_0000705
so part of: sequence
location: 40754..41677
location: region:40754-41677:1
so has part: feature:40754-41677:1:exon
subclass of: SO_0000010

position:40754:1
position: 40754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41677:1
position: 41677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40754-41677:1:exon

GPZ83_RS00710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: glyQ
locus tag: GPZ83_RS00710
old locus tag: GPZ83_0000705
EC number: 6.1.1.14
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013204507.1
GO component: GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO function: GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycine--tRNA ligase subunit alpha
translation: MQKFDTKTFQGLILTLQDYWARQGCTLVQPLDIEVGAGTSHPMTCLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKELGLDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSHGSQGIITYGDVFHQNEVEQSTYNFTYADVDFLFSCFEQYEKEAQSLLALEKPLPLPAYERILKAGHTFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCKTRTQRQP
SIO_010081: GPZ83_RS00710
subclass of: SO_0000673
so part of: GPZ83_RS00710
location: 40754..41677
location: region:40754-41677:1
so has part: feature:40754-41677:1:exon

WP_160758693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40754-41677:1:exon

GPZ83_RS00715
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: glyS
locus tag: GPZ83_RS00715
old locus tag: GPZ83_0000710
so part of: sequence
location: 41674..43743
location: region:41674-43743:1
so has part: feature:41674-43743:1:exon
subclass of: SO_0000010

position:41674:1
position: 41674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43743:1
position: 43743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41674-43743:1:exon

GPZ83_RS00715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: glyS
locus tag: GPZ83_RS00715
old locus tag: GPZ83_0000710
EC number: 6.1.1.14
inference: COORDINATES: similar to AA sequence:RefSeq:NP_462555.1
GO component: GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO function: GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycine--tRNA ligase subunit beta
translation: MTQQTFLVEIGTEELPPKALRSLAGSFAANFTTELENANLEHGSVSWFATPRRLALKVANLSAAQADRIVEKRGPAINQAFDATGKPNKAAEGWARGCGITVDQAERLVTDKGEWLLYRAHVKGQPVQQLLASMVNTALSKLPIPKLMRWGDSEVQFVRPVHTVTLLLGAELIPGSVLGVESARTIRGHRFMGETEFTLDNADHYPQILLERGKVIADYEARKALIKRDAERAAAKIGGKADLSESLLEEVASLVEWPVVLTAKFEEEFLAVPAEALVYTMKGDQKYFPVYGSAGNLLPNFIFVANIESKDPQQIITGNEKVVRPRLADAEFFFNTDRKKRLEDHLPRLDTVLFQQQLGTLRDKTDRIQALAGWIAGQIGADVNHATRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHDGEVEDVAVALNEQYQPRFAGDRLPQSRVACSLAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLPLDLQILTEEAVHLYSSKLTNVKVVDEVVEFMLGRFRAWYQEEGHALDTIQAVLARRPTKPADFDARVKAVSHFRTLEEAAALAAANKRVSNILAKSTDTLNNHVQASVLQEAAEIQLASHLVVLRDKLEPYFAAGNYQDALVELATLREPVDAFFENVMVMAEDDAVRVNRLTLLSKLRELFLQVADISVLQ
SIO_010081: GPZ83_RS00715
subclass of: SO_0000673
so part of: GPZ83_RS00715
location: 41674..43743
location: region:41674-43743:1
so has part: feature:41674-43743:1:exon

WP_040264198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41674-43743:1:exon

GPZ83_RS00720
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00720
old locus tag: GPZ83_0000715
pseudo: true
so part of: sequence
location: complement(43784..>44086)
location: region:43784-44086:-1
so has part: feature:43784-44086:-1:exon
subclass of: SO_0000010

position:43784:-1
position: 43784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44086:-1
position: 44086
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43784-44086:-1:exon

GPZ83_RS00720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00720
old locus tag: GPZ83_0000715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009151157.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: cell filamentation protein Fic
SIO_010081: GPZ83_RS00720
subclass of: SO_0000673
so part of: GPZ83_RS00720
location: complement(43784..>44086)
location: region:43784-44086:-1
so has part: feature:43784-44086:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43784-44086:-1:exon

GPZ83_RS00725
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00725
old locus tag: GPZ83_0000720
so part of: sequence
location: 44375..45094
location: region:44375-45094:1
so has part: feature:44375-45094:1:exon
subclass of: SO_0000010

position:44375:1
position: 44375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45094:1
position: 45094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44375-45094:1:exon

GPZ83_RS00725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00725
old locus tag: GPZ83_0000720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019455519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3053 domain-containing protein
translation: MALGIQNRGFTRWWLPVLALLMIMQLTACGDKEPEQRKAFIDYLQNTVMYSGARLPTLSEDQQKKFSNYNGDYAILVGFSQQLSKSIGASLTPALDQINQIRVAQDYMSKRDALQQSIGALNLLGQQIQSAKSQADAARMALKQPDDLKAVYNQVYDNIVTVPTHALMPAIPTTTSFIQDLVHIGDFLQAQGNQVSFNNNGVQFRTAQQATQYNAMILNLVAKQQDLLKAQQTIQPLMQ
SIO_010081: GPZ83_RS00725
subclass of: SO_0000673
so part of: GPZ83_RS00725
location: 44375..45094
location: region:44375-45094:1
so has part: feature:44375-45094:1:exon

WP_040264201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44375-45094:1:exon

GPZ83_RS00730
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00730
old locus tag: GPZ83_0000725
pseudo: true
so part of: sequence
location: 45512..>46176
location: region:45512-46176:1
so has part: feature:45512-46176:1:exon
subclass of: SO_0000010

position:45512:1
position: 45512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46176:1
position: 46176
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45512-46176:1:exon

GPZ83_RS00730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00730
old locus tag: GPZ83_0000725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004950639.1
note: catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIC forms the translocation channel and contains the specific substrate-binding site; subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit; subunit IIB transfers the phosphoryl group to the substrate; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PTS mannitol transporter subunit IICBA
SIO_010081: GPZ83_RS00730
subclass of: SO_0000673
so part of: GPZ83_RS00730
location: 45512..>46176
location: region:45512-46176:1
so has part: feature:45512-46176:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45512-46176:1:exon

GPZ83_RS00735
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00735
old locus tag: GPZ83_0000730
pseudo: true
so part of: sequence
location: complement(47459..>47581)
location: region:47459-47581:-1
so has part: feature:47459-47581:-1:exon
subclass of: SO_0000010

position:47459:-1
position: 47459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47581:-1
position: 47581
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47459-47581:-1:exon

GPZ83_RS00735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00735
old locus tag: GPZ83_0000730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013365374.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: GPZ83_RS00735
subclass of: SO_0000673
so part of: GPZ83_RS00735
location: complement(47459..>47581)
location: region:47459-47581:-1
so has part: feature:47459-47581:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47459-47581:-1:exon

GPZ83_RS00740
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00740
old locus tag: GPZ83_0000735
pseudo: true
so part of: sequence
location: <47623..47733
location: region:47623-47733:1
so has part: feature:47623-47733:1:exon
subclass of: SO_0000010

position:47623:1
position: 47623
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:47733:1
position: 47733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47623-47733:1:exon

GPZ83_RS00740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00740
old locus tag: GPZ83_0000735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5/IS1182 family transposase
SIO_010081: GPZ83_RS00740
subclass of: SO_0000673
so part of: GPZ83_RS00740
location: <47623..47733
location: region:47623-47733:1
so has part: feature:47623-47733:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47623-47733:1:exon

GPZ83_RS00745
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: hemW
locus tag: GPZ83_RS00745
old locus tag: GPZ83_0000740
so part of: sequence
location: complement(47746..48924)
location: region:47746-48924:-1
so has part: feature:47746-48924:-1:exon
subclass of: SO_0000010

position:47746:-1
position: 47746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48924:-1
position: 48924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47746-48924:-1:exon

GPZ83_RS00745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: hemW
locus tag: GPZ83_RS00745
old locus tag: GPZ83_0000740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006708733.1
GO function: GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM family heme chaperone HemW
translation: MLKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHQEYVDHLLADLNADLPLAGDREISTLFIGGGTPSLLSAEAMQALLDGVRSRIRVADDAEITMEANPGTVEADRFSGYQHAGVNRISIGVQSFNAEKLIRLGRIHGAEEAKRSAHLATGLGLRSFNLDLMHGLPDQSLEDALDDLRQAIALNPPHLSWYQLTIEPNTLFSSRPPVLPDDDALWDIFEQGHQLLSDAGYQQYETSAYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFSDGRILRTAKTKHPRGFMQGKYRDKQHEVVLADRPFEFFMNRFRLLEAAPRADFVNYTGLAESAIRPQLEEALMKGYLKETPEYWQITEQGKLFLNALLELFLVDEALLNKSDFGSAAP
SIO_010081: GPZ83_RS00745
subclass of: SO_0000673
so part of: GPZ83_RS00745
location: complement(47746..48924)
location: region:47746-48924:-1
so has part: feature:47746-48924:-1:exon

WP_040264203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47746-48924:-1:exon

GPZ83_RS00750
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: rdgB
locus tag: GPZ83_RS00750
old locus tag: GPZ83_0000745
so part of: sequence
location: complement(48917..49510)
location: region:48917-49510:-1
so has part: feature:48917-49510:-1:exon
subclass of: SO_0000010

position:48917:-1
position: 48917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49510:-1
position: 49510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48917-49510:-1:exon

GPZ83_RS00750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: rdgB
locus tag: GPZ83_RS00750
old locus tag: GPZ83_0000745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011095132.1
GO function: GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
translation: MQNVVLATANPGKVREFAELLADVEFKVIAQTELGVDPAEETGLTFIENAILKARHAAQETGLPAIADDSGLAVDVLGGAPGIYSARYAGDNASDRQNLDKLLAALKDVPQGSRGAQFHCVLVYMRHAQDPTPLVCHGSWVGEITIGTLGEGGFGYDPVFYLPELGRTAAELSREEKSALSHRGKALKLMLAAMRNA
SIO_010081: GPZ83_RS00750
subclass of: SO_0000673
so part of: GPZ83_RS00750
location: complement(48917..49510)
location: region:48917-49510:-1
so has part: feature:48917-49510:-1:exon

WP_040264205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48917-49510:-1:exon

GPZ83_RS00755
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: yggU
locus tag: GPZ83_RS00755
old locus tag: GPZ83_0000750
so part of: sequence
location: complement(49536..49829)
location: region:49536-49829:-1
so has part: feature:49536-49829:-1:exon
subclass of: SO_0000010

position:49536:-1
position: 49536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49829:-1
position: 49829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49536-49829:-1:exon

GPZ83_RS00755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: yggU
locus tag: GPZ83_RS00755
old locus tag: GPZ83_0000750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006708735.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF167 family protein YggU
translation: MSAVIPVADGLAIRLYIQPKASRDQIIGLHGDEVKVAITAPPVDGQANAHLIKFLAKQFKVARSNVTIEKGELGRHKQLHIIHPQQIPAVVAALYTA
SIO_010081: GPZ83_RS00755
subclass of: SO_0000673
so part of: GPZ83_RS00755
location: complement(49536..49829)
location: region:49536-49829:-1
so has part: feature:49536-49829:-1:exon

WP_040264207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49536-49829:-1:exon

GPZ83_RS00760
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00760
old locus tag: GPZ83_0000755
so part of: sequence
location: complement(49826..50380)
location: region:49826-50380:-1
so has part: feature:49826-50380:-1:exon
subclass of: SO_0000010

position:49826:-1
position: 49826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50380:-1
position: 50380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49826-50380:-1:exon

GPZ83_RS00760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00760
old locus tag: GPZ83_0000755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012413935.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YggT family protein
translation: MLTLTFLVKTVIDLYVMVLLLRIWMQWTHIDFYNPFSQFVVKITQPVVAPLRCIIPSLGPIDSASLLLAFLLMTIKYPLLLLIQGGAISLNPYNLLFGLISLVKSVGYLIFWVMIIRALMSWISQGHSPIDYVMYQLTEPLMAPIRRIIPAMGGIDFSAMVVILILYLLNYLGIDLFGELWFLL
SIO_010081: GPZ83_RS00760
subclass of: SO_0000673
so part of: GPZ83_RS00760
location: complement(49826..50380)
location: region:49826-50380:-1
so has part: feature:49826-50380:-1:exon

WP_040264209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49826-50380:-1:exon

GPZ83_RS00765
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: proC
locus tag: GPZ83_RS00765
old locus tag: GPZ83_0000760
so part of: sequence
location: complement(50412..51233)
location: region:50412-51233:-1
so has part: feature:50412-51233:-1:exon
subclass of: SO_0000010

position:50412:-1
position: 50412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51233:-1
position: 51233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50412-51233:-1:exon

GPZ83_RS00765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: proC
locus tag: GPZ83_RS00765
old locus tag: GPZ83_0000760
EC number: 1.5.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004391012.1
GO function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO process: GO:0006561 - proline biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyrroline-5-carboxylate reductase
translation: MQYRKITFIGAGNMARAIIAGLVADGYPAKFIRVCAPSTKNRDALMASLGIVSSGDNIASVREAEVVVLAVKPQMMAEVCQPLREHVDFTGKLVLSIAAGIQVSRFYQLLSDKLSLVRIMPNTPSLVGKGMSGLYAPPQVSPQDREYTADLMSAVGKVCWVNDENGINRVIAAAGSAPAYFFLFMEAMQNEAERMGFDCQTARDLVQQAASGAAALVEANPNTPLSTLREQVTSKGGTTAEALRVFNQQQLPETVAKAMQAAVSRAQEMEKLF
SIO_010081: GPZ83_RS00765
subclass of: SO_0000673
so part of: GPZ83_RS00765
location: complement(50412..51233)
location: region:50412-51233:-1
so has part: feature:50412-51233:-1:exon

WP_040264212.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50412-51233:-1:exon

GPZ83_RS00770
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00770
old locus tag: GPZ83_0000765
so part of: sequence
location: complement(51250..51957)
location: region:51250-51957:-1
so has part: feature:51250-51957:-1:exon
subclass of: SO_0000010

position:51250:-1
position: 51250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51957:-1
position: 51957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51250-51957:-1:exon

GPZ83_RS00770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00770
old locus tag: GPZ83_0000765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004958752.1
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YggS family pyridoxal phosphate-dependent enzyme
translation: MRTIQQNLQDVRNRIATMSQDCARAPEEVTLLAVSKTKPVAVIAEAIAAGQRTFGENYVQEGVDKIQHFAALPEGTALEWHFIGPLQSNKSRLVAEHFAWCQTVDRLRIAERLNDQRPATMAPLNVLIQINISDEQSKSGIVLDALPALAEAIVALPNLMLRGLMAIPAPEVVYPRQLAVFGQMNDAFLALRQRYPQVDTLSMGMSDDMAAAIAAGSTMVRIGTAIFGHRDYSPA
SIO_010081: GPZ83_RS00770
subclass of: SO_0000673
so part of: GPZ83_RS00770
location: complement(51250..51957)
location: region:51250-51957:-1
so has part: feature:51250-51957:-1:exon

WP_040264219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51250-51957:-1:exon

GPZ83_RS00775
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00775
old locus tag: GPZ83_0000770
so part of: sequence
location: 51978..53033
location: region:51978-53033:1
so has part: feature:51978-53033:1:exon
subclass of: SO_0000010

position:51978:1
position: 51978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53033:1
position: 53033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51978-53033:1:exon

GPZ83_RS00775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00775
old locus tag: GPZ83_0000770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017803489.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus twitching motility protein PilT
translation: MDIGELVALSVKHNASDLHLCADHPPMLRIDGELQPLAGAENLTPEQMLTWCDALLASPQRRELQQQGQADFVVQQPDGTRLRANAFMQRQGISLALRRITDLCPTLAALAAPAILPTLLRREDGLILVTGATGSGKSTTLAAMIDEINRHQRRHILTLEDPIEFIHHSQRSLVQQREIGRDSHRFDGALRAALREDPDVILLGELRDTTTIRLALTAAETGHLVLATLHTRSAAQAIERLVDVFPAEEKHCVRAQLAGSLQAVIAQKLLRRPGSGRVAIFEVLTATAAVSSMIREGKTHQLNSVLQTGAQSGMQTFEQGLQQRIEAGLLGGNGAEAGGFSPADARTNFPE
SIO_010081: GPZ83_RS00775
subclass of: SO_0000673
so part of: GPZ83_RS00775
location: 51978..53033
location: region:51978-53033:1
so has part: feature:51978-53033:1:exon

WP_052447660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51978-53033:1:exon

GPZ83_RS00780
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
gene: ruvX
locus tag: GPZ83_RS00780
old locus tag: GPZ83_0000775
so part of: sequence
location: complement(52996..53418)
location: region:52996-53418:-1
so has part: feature:52996-53418:-1:exon
subclass of: SO_0000010

position:52996:-1
position: 52996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53418:-1
position: 53418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52996-53418:-1:exon

GPZ83_RS00780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
gene: ruvX
locus tag: GPZ83_RS00780
old locus tag: GPZ83_0000775
EC number: 3.1.21.10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002209978.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0008150 - biological_process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Holliday junction resolvase RuvX
translation: MSNRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQAGSPDWQKIAKLLQEWQPDLVVVGLPLNMDGSEQPVTEQARKFANRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGSVDSASAVVILESWFGRQQG
SIO_010081: GPZ83_RS00780
subclass of: SO_0000673
so part of: GPZ83_RS00780
location: complement(52996..53418)
location: region:52996-53418:-1
so has part: feature:52996-53418:-1:exon

WP_040264221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52996-53418:-1:exon

GPZ83_RS00785
type: Gene
subclass of: SO_0000704
RO_0002162: 138074
locus tag: GPZ83_RS00785
old locus tag: GPZ83_0000780
so part of: sequence
location: complement(53418..53981)
location: region:53418-53981:-1
so has part: feature:53418-53981:-1:exon
subclass of: SO_0000010

position:53981:-1
position: 53981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53418-53981:-1:exon

GPZ83_RS00785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 138074
locus tag: GPZ83_RS00785
old locus tag: GPZ83_0000780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012442535.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YqgE/AlgH family protein
translation: MNLQHHFLIAMPSLQASCFTRSVIYICEHNEEGAMGLVINKPLEQCTVAMVLNKLKIMPQTRDPAINLEKPVFAGGPLADDCGFILHTPCQGFGYSMAISEQTMITTSKDVLETLGTPEQPDNVLVALGYAGWEPGQLEQEVLENVWLTLEADTDTLFHTPIAKRWREAANRLGVDIRSIVNHVGHA
SIO_010081: GPZ83_RS00785
subclass of: SO_0000673
so part of: GPZ83_RS00785
location: complement(53418..53981)
location: region:53418-53981:-1
so has part: feature:53418-53981:-1:exon

WP_037389254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53418-53981:-1:exon