Halobellus ramosii strain DSM 26177 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halobellus.
Diverse halophilic archaea isolated from saline environments
Submitted (22-JUL-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP101826.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 397.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/01/2022 17:06:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,907\nCDSs (total) :: 2,850\nGenes (coding) :: 2,807\nCDSs (with protein) :: 2,807\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 16 of 43\nPseudo Genes (incomplete) :: 35 of 43\nPseudo Genes (internal stop) :: 10 of 43\nPseudo Genes (multiple problems) :: 14 of 43\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
a brine sample of the inland hypersaline lake Fuente de Piedra
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012744.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_012289547.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007273487.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004041906.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_017342136.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413948.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108006.1
COORDINATES: similar to AA sequence:RefSeq:WP_006068042.1
COORDINATES: similar to AA sequence:RefSeq:WP_021029740.1
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:NF018471.2
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183389.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579618.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013232.2
MTAP family purine nucleoside phosphorylase
COORDINATES: protein motif:HMM:NF016228.2
COORDINATES: similar to AA sequence:RefSeq:WP_011572691.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_012871640.1
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF024954.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006056204.1
GO:0045550 - geranylgeranyl reductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007258826.1
COORDINATES: similar to AA sequence:RefSeq:WP_010903436.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092995.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067107.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007188969.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007188968.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013880167.1
orc1/cdc6 family replication initiation protein
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: similar to AA sequence:RefSeq:WP_009762224.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457984.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289715.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184776.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762229.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865840.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276471.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065943.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181071.1
sugar-specific transcriptional regulator TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_007108991.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006066879.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060439.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107493.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557020.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600170.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008095980.1
COORDINATES: similar to AA sequence:RefSeq:WP_008095981.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885277.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182403.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061530.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093045.1
COORDINATES: protein motif:HMM:NF023075.2
group I intron-associated PD-(D/E)XK endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_004060450.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060458.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516402.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011324411.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008161771.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008094484.1
SWIM zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488186.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222456.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222457.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184811.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431700.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592233.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890440.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015790660.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945891.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014555919.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555918.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221866.1
COORDINATES: similar to AA sequence:RefSeq:WP_008850025.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183554.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572285.1
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: similar to AA sequence:RefSeq:WP_010904187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422551.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR04213.1
COORDINATES: protein motif:HMM:TIGR04207.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_014040201.1
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
COORDINATES: similar to AA sequence:RefSeq:WP_014556346.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010903989.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008605554.1
COORDINATES: similar to AA sequence:RefSeq:WP_011223694.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_004978086.1
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014031087.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01409.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807474.1
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: protein motif:HMM:NF040371.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222276.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012982.2
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008308988.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882927.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385069.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094638.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650711.1
COORDINATES: similar to AA sequence:RefSeq:WP_004058697.1
COORDINATES: similar to AA sequence:RefSeq:WP_007273877.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004058692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703482.1
COORDINATES: similar to AA sequence:RefSeq:WP_004058688.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020220921.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457953.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008015258.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041843.1
COORDINATES: protein motif:HMM:NF025617.2
COORDINATES: similar to AA sequence:RefSeq:WP_008609409.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182483.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183394.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182484.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376767.1
COORDINATES: similar to AA sequence:RefSeq:WP_008326328.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827459.1
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: similar to AA sequence:RefSeq:WP_020222004.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488202.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572754.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183393.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579802.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188050.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992723.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572751.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387361.1
COORDINATES: similar to AA sequence:RefSeq:WP_020935938.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188048.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966861.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053455.1
COORDINATES: similar to AA sequence:RefSeq:WP_008003138.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_007541935.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043651.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611506.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_006113503.1
COORDINATES: similar to AA sequence:RefSeq:WP_006113505.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457507.1
COORDINATES: protein motif:HMM:NF013799.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053535.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043593.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060789.1
COORDINATES: similar to AA sequence:RefSeq:WP_004056787.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107757.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044138.1