Weissella cibaria strain CMS3 plasmid unnamed, complete sequence.
type: Entry
definition: Weissella cibaria strain CMS3 plasmid unnamed, complete sequence.
sequence version: NZ_CP013935.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP013935.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04328350
keyword: RefSeq
source: Weissella cibaria
organism: Weissella cibaria
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Weissella.
reference: 1
references: 16288835
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP013935.1.\nSource DNA is available from Misun Kang, PhD and Oradentics\nResearch Institute.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2015\nAssembly Method :: HGAP v. 2\nGenome Coverage :: 225x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:52:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,237\nCDSs (total) :: 2,118\nGenes (coding) :: 2,107\nCDSs (with protein) :: 2,107\nGenes (RNA) :: 119\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 88\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 1 of 11\nPseudo Genes (incomplete) :: 7 of 11\nPseudo Genes (internal stop) :: 4 of 11\nPseudo Genes (multiple problems) :: 1 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20585
topology: circular
so has quality: SO_0000988
location: 1..20585
location: region:1-20585:1
RO_0002162: 137591

NZ_CP013935
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04328350
type: BioSample
SIO_000068: biosample

1
title: Coaggregation ability of Weissella cibaria isolates with Fusobacterium nucleatum and their adhesiveness to epithelial cells
author: Kang, M.S.
author: Na, H.S.
author: Oh, J.S.
journal: FEMS Microbiol Lett
volume: 253
issue: 2
pages: 323-329
year: 2005
pubmed: 16288835

16288835
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Yoon, E.
journal: Submitted (06-JAN-2016) Research Institute, Oradentics, 77 Gil 23 Taeheran-Ro, Seoul 06157, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20585:1
position: 20585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20585:1:source
so part of: sequence
organism: Weissella cibaria
mol type: genomic DNA
strain: CMS3
isolation source: infant saliva
host: Homo sapiens
plasmid: unnamed
country: South Korea: Gwangju
collection date: 2001-11
collected by: Oradentics
identified by: Dr. Oh JS

137591
type: Taxonomy
SIO_000068: taxonomy

AUC62_RS10940
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10940
so part of: sequence
location: complement(join(20105..20585,1..1283))
location: region:1-20585:-1
so has part: feature:1-1283:-1:exon
so has part: feature:20105-20585:-1:exon
subclass of: SO_0000010

66963428
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20585:-1
position: 20585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1283:-1:exon

position:1283:-1
position: 1283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20105-20585:-1:exon

position:20105:-1
position: 20105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AUC62_RS10940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10940
EC number: 4.2.1.53
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002827673.1
GO function: GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO process: GO:0006631 - fatty acid metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oleate hydratase
translation: MRYSNGNYEAFARPRKPKNVDQKSAYIIGGGLAGLATAVFLVRDGQMSGEKIHIYEELPTPGGSLDGEKRANIGFVTRGGREMENHFETMWDMYRSIPSLEIEDASYLDEFYWLDKDDPNSSNTRLIYNRGQRVPTDGLYTLDEKSKELIDLVLTPESKLGKTTIEEFFSNEFFESNFWMYWATMFAFEKWHSAVEMRRYTMRFIHHIDGLPDFSALKFNRYNQYESMVLPIIKYLESYNVEFIYNTQVNNVLVDFENDEKIAKKLVIQDGDDVSLSRDDLVFVTNGSITESSTYGSHDKPAPVSKELGGSWSLWKNLAEQSNDFGHPEVFYDNLPEKSWFVSATATIKSPEIEPYIERLTNRDLHDHKINTGGIITITDSNWLMSFAVHRQPHFKEQKENETTVWIYGLYSDTKGNFVNKTIVESSGEEITQELLYHLGVPESKIKQLSNQNNINTVPVFMPFITSYFMPRVAGDRPDIVPKGSVNLAFIGNFAESPSNDTVFTTEYSIRTAMESVYTLLEVERAVPEVYGSIYDIRELLKAIYYMGDKKTIDEANLGIPKLAKAALKKKIKGTFIEELLTESKLL
SIO_010081: AUC62_RS10940
subclass of: SO_0000673
so part of: AUC62_RS10940
location: complement(join(20105..20585,1..1283))
location: region:1-20585:-1
so has part: feature:1-1283:-1:exon
so has part: feature:20105-20585:-1:exon

WP_010372434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1283:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:20105-20585:-1:exon

AUC62_RS10945
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10945
old locus tag: AUC62_02224
so part of: sequence
location: complement(1347..2231)
location: region:1347-2231:-1
so has part: feature:1347-2231:-1:exon
subclass of: SO_0000010

66963429
type: Gene
SIO_000068: ncbigene

position:1347:-1
position: 1347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2231:-1
position: 2231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1347-2231:-1:exon

AUC62_RS10945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10945
old locus tag: AUC62_02224
EC number: 1.1.1.35
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002827674.1
GO function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO process: GO:0006631 - fatty acid metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-hydroxyacyl-CoA dehydrogenase
translation: MSIKNVTVAGGGILGGQIAFQSQFMGFNVTVYDVNDSALKHSEQLMTSYPDIYKNFYEDGQKADEVIENIRFSSNLADAVQDADLVIEAIPENVDIKKDFYKQLSRVAPPKAIFASNSSTLIPSQFVDSVDRPEKFLALHFANQIWVNNNAEIMGHAGTDEKYIDELVKFARDIRMVPFKLNKEQHGYILNSLLVPFLDAGTKLWANGVSDPHTIDKAWMLATKAPMGPFALLDVVGLQTPYNLALSRSETDEEQAKIARLIKEMIDKGHTGLAAGKGFYEYPNPEYQQESFLK
SIO_010081: AUC62_RS10945
subclass of: SO_0000673
so part of: AUC62_RS10945
location: complement(1347..2231)
location: region:1347-2231:-1
so has part: feature:1347-2231:-1:exon

WP_010372433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1347-2231:-1:exon

AUC62_RS10950
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
gene: arsC
locus tag: AUC62_RS10950
old locus tag: AUC62_02225
so part of: sequence
location: complement(2701..3117)
location: region:2701-3117:-1
so has part: feature:2701-3117:-1:exon
subclass of: SO_0000010

66963430
type: Gene
SIO_000068: ncbigene

position:2701:-1
position: 2701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3117:-1
position: 3117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2701-3117:-1:exon

AUC62_RS10950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
gene: arsC
locus tag: AUC62_RS10950
old locus tag: AUC62_02225
EC number: 1.20.4.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010276791.1
GO function: GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arsenate reductase (thioredoxin)
translation: MKKIYFLCTGNSCRSQMAEGYAKKILPANEFQIESAGIETHGLNLNAVKVMAEDGVDISSHYSKLIDLNYLNTSDLVITLCGDAKDKCPMLPPQTKSLHWPLSDPAQATGTLEEQLQEFRKVRDEIKKLVTSLNNYVH
SIO_010081: AUC62_RS10950
subclass of: SO_0000673
so part of: AUC62_RS10950
location: complement(2701..3117)
location: region:2701-3117:-1
so has part: feature:2701-3117:-1:exon

WP_010276791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2701-3117:-1:exon

AUC62_RS10955
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10955
old locus tag: AUC62_02226
so part of: sequence
location: complement(3235..3573)
location: region:3235-3573:-1
so has part: feature:3235-3573:-1:exon
subclass of: SO_0000010

66963431
type: Gene
SIO_000068: ncbigene

position:3235:-1
position: 3235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3573:-1
position: 3573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3235-3573:-1:exon

AUC62_RS10955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10955
old locus tag: AUC62_02226
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003646108.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MILGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDSLIKGDDSLKKSIVITKNAKAQTNVWEFMRSTGWMMVIAIIYLVTKMIIAVFS
SIO_010081: AUC62_RS10955
subclass of: SO_0000673
so part of: AUC62_RS10955
location: complement(3235..3573)
location: region:3235-3573:-1
so has part: feature:3235-3573:-1:exon

WP_010372432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3235-3573:-1:exon

AUC62_RS10960
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10960
old locus tag: AUC62_02227
so part of: sequence
location: complement(3763..4377)
location: region:3763-4377:-1
so has part: feature:3763-4377:-1:exon
subclass of: SO_0000010

66963432
type: Gene
SIO_000068: ncbigene

position:3763:-1
position: 3763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4377:-1
position: 4377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3763-4377:-1:exon

AUC62_RS10960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10960
old locus tag: AUC62_02227
inference: COORDINATES: protein motif:HMM:NF012870.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
translation: MRFILQTDVGDRLVWEPMNELNLKSRMVKKSYKKPTTTTDTPQKPNLMKKLDDLSGVLATDITYTQLMNREWVYLATVYDPEKRRVVSYGLSPEMTKEFATSVVVKALRANGKPNMIHSDMGSQYTSSLFEGTLQNSGIHHSYSRKGHPYDNARIKSFHSLIKREMIYHEEYRTIDDVRVSVEWYVNWYNNSHINSRTDWLQTA
SIO_010081: AUC62_RS10960
subclass of: SO_0000673
so part of: AUC62_RS10960
location: complement(3763..4377)
location: region:3763-4377:-1
so has part: feature:3763-4377:-1:exon

WP_137636376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3763-4377:-1:exon

AUC62_RS10965
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10965
old locus tag: AUC62_02228
so part of: sequence
location: complement(4650..5267)
location: region:4650-5267:-1
so has part: feature:4650-5267:-1:exon
subclass of: SO_0000010

66963433
type: Gene
SIO_000068: ncbigene

position:4650:-1
position: 4650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5267:-1
position: 5267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4650-5267:-1:exon

AUC62_RS10965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10965
old locus tag: AUC62_02228
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H-binding protein
translation: MNIGIIGATGKLGNLLVEKLTNRNEKPTAIVRNKSKLTTNIPTIEKDIFDLTTEDIKDFDVVVNAFNAPMEDPEQFITSTEHLISILQGTNTRLVFAGGAGVLLVDENTMLVDTPEVPAEFKPIAEAEVTAFKALAEVQDFDWTYMAPPAMMEFDAPHTGKHSFSGNKLGVNADGKSFISYSDYADAFVEQIFNPENHAIVGVYA
SIO_010081: AUC62_RS10965
subclass of: SO_0000673
so part of: AUC62_RS10965
location: complement(4650..5267)
location: region:4650-5267:-1
so has part: feature:4650-5267:-1:exon

WP_010372430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4650-5267:-1:exon

AUC62_RS10970
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10970
old locus tag: AUC62_02229
so part of: sequence
location: 5394..5732
location: region:5394-5732:1
so has part: feature:5394-5732:1:exon
subclass of: SO_0000010

66963434
type: Gene
SIO_000068: ncbigene

position:5394:1
position: 5394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5732:1
position: 5732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5394-5732:1:exon

AUC62_RS10970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10970
old locus tag: AUC62_02229
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014975082.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTELKYLELPPCPVATTALLIGDHWKILIIRELLNGTKRFGELTKGLDGISNKVLSQHLKVMESRGLIERRVYAEVPVKVEYSLTDIGWKLKPLIHEMWQWGELYKSIEANK
SIO_010081: AUC62_RS10970
subclass of: SO_0000673
so part of: AUC62_RS10970
location: 5394..5732
location: region:5394-5732:1
so has part: feature:5394-5732:1:exon

WP_010372429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5394-5732:1:exon

AUC62_RS10975
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10975
old locus tag: AUC62_02230
so part of: sequence
location: complement(6103..6567)
location: region:6103-6567:-1
so has part: feature:6103-6567:-1:exon
subclass of: SO_0000010

66963435
type: Gene
SIO_000068: ncbigene

position:6103:-1
position: 6103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6567:-1
position: 6567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6103-6567:-1:exon

AUC62_RS10975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10975
old locus tag: AUC62_02230
inference: COORDINATES: protein motif:HMM:NF024997.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
translation: MDDLSGVLATDITYIQLMNREWVYLATVYDPEKRRVVSYGLSPEMTKEFATSVVVKALRAKGKPKMIHSDMGSQYTSSLFEGTLQNSGIHHSYSRKGHPYDNARIESFHSLIKREMIYHEEYGTIDDVRVSVEWYVNWYNNSRINSRTDWLQTA
SIO_010081: AUC62_RS10975
subclass of: SO_0000673
so part of: AUC62_RS10975
location: complement(6103..6567)
location: region:6103-6567:-1
so has part: feature:6103-6567:-1:exon

WP_123157499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6103-6567:-1:exon

AUC62_RS10980
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10980
old locus tag: AUC62_02231
pseudo: true
so part of: sequence
location: complement(<6686..7540)
location: region:6686-7540:-1
so has part: feature:6686-7540:-1:exon
subclass of: SO_0000010

66963436
type: Gene
SIO_000068: ncbigene

position:6686:-1
position: 6686
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:7540:-1
position: 7540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6686-7540:-1:exon

AUC62_RS10980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10980
old locus tag: AUC62_02231
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010010578.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type I restriction endonuclease
SIO_010081: AUC62_RS10980
subclass of: SO_0000673
so part of: AUC62_RS10980
location: complement(<6686..7540)
location: region:6686-7540:-1
so has part: feature:6686-7540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6686-7540:-1:exon

AUC62_RS10985
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10985
pseudo: true
so part of: sequence
location: complement(7573..>7803)
location: region:7573-7803:-1
so has part: feature:7573-7803:-1:exon
subclass of: SO_0000010

66963437
type: Gene
SIO_000068: ncbigene

position:7573:-1
position: 7573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7803:-1
position: 7803
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7573-7803:-1:exon

AUC62_RS10985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102127.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA-binding protein
SIO_010081: AUC62_RS10985
subclass of: SO_0000673
so part of: AUC62_RS10985
location: complement(7573..>7803)
location: region:7573-7803:-1
so has part: feature:7573-7803:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7573-7803:-1:exon

AUC62_RS10990
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10990
old locus tag: AUC62_02232
so part of: sequence
location: 7930..8502
location: region:7930-8502:1
so has part: feature:7930-8502:1:exon
subclass of: SO_0000010

66963438
type: Gene
SIO_000068: ncbigene

position:7930:1
position: 7930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8502:1
position: 8502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7930-8502:1:exon

AUC62_RS10990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10990
old locus tag: AUC62_02232
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003608735.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: uracil-DNA glycosylase family protein
translation: MDLKQEIMADSRNVSFTARGLEPIYMIAPTVKILIIGQAPGAVVEQTGILFNDKSGDRLREWMGIDRTTFYDSGLIGVLPMDFYFPGKGKRGDLPPRKFVAGEWHQRLLDTMPDIELILLVGKYAQQHYLPIKASESLTSVVHRFADFGPRYLPLAHPSPLNNIWLAKNPWFETDVVPALQKRVADILKK
SIO_010081: AUC62_RS10990
subclass of: SO_0000673
so part of: AUC62_RS10990
location: 7930..8502
location: region:7930-8502:1
so has part: feature:7930-8502:1:exon

WP_029237464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7930-8502:1:exon

AUC62_RS10995
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS10995
old locus tag: AUC62_02233
so part of: sequence
location: complement(8560..9012)
location: region:8560-9012:-1
so has part: feature:8560-9012:-1:exon
subclass of: SO_0000010

66963439
type: Gene
SIO_000068: ncbigene

position:8560:-1
position: 8560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9012:-1
position: 9012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8560-9012:-1:exon

AUC62_RS10995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS10995
old locus tag: AUC62_02233
inference: COORDINATES: protein motif:HMM:NF012870.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MAERAYFTAYIDVYSGEVLTWNIDLHPTVEFVTKPLDELLQNRPESSYRMTIHSDQGFQYQNYEYISLLKTNRVFQSMSRKATCLDNAMAESIFHILKVGTVHNNHYQSYDELKSSITNYVYYYNNKRIETKLAGKTPVQYRNLSNQLAA
SIO_010081: AUC62_RS10995
subclass of: SO_0000673
so part of: AUC62_RS10995
location: complement(8560..9012)
location: region:8560-9012:-1
so has part: feature:8560-9012:-1:exon

WP_010372415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8560-9012:-1:exon

AUC62_RS11000
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11000
old locus tag: AUC62_02234
so part of: sequence
location: 10642..11142
location: region:10642-11142:1
so has part: feature:10642-11142:1:exon
subclass of: SO_0000010

66963440
type: Gene
SIO_000068: ncbigene

position:10642:1
position: 10642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11142:1
position: 11142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10642-11142:1:exon

AUC62_RS11000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11000
old locus tag: AUC62_02234
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKFDNVDELLKELGISRATAYRRARKYDISLSDLSSGLSDDEIEKLKKPLQNSGKQKVSEDVEKYRIKVSEMSDIIASLETEISSQKERYDMERKRNDERETVLLDKLGEAQNLVSQSQQLQLMTENKLAKVEEELASIKMIETETESQTTANDPKRGWLARLFG
SIO_010081: AUC62_RS11000
subclass of: SO_0000673
so part of: AUC62_RS11000
location: 10642..11142
location: region:10642-11142:1
so has part: feature:10642-11142:1:exon

WP_010372417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10642-11142:1:exon

AUC62_RS11495
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11495
old locus tag: AUC62_02236
so part of: sequence
location: 11580..11714
location: region:11580-11714:1
so has part: feature:11580-11714:1:exon
subclass of: SO_0000010

74354025
type: Gene
SIO_000068: ncbigene

position:11580:1
position: 11580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11714:1
position: 11714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11580-11714:1:exon

AUC62_RS11495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11495
old locus tag: AUC62_02236
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDDDKKLDELETQLVPTPDIDLSVPADEPEPDVAESVAKSMDK
SIO_010081: AUC62_RS11495
subclass of: SO_0000673
so part of: AUC62_RS11495
location: 11580..11714
location: region:11580-11714:1
so has part: feature:11580-11714:1:exon

WP_010372420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11580-11714:1:exon

AUC62_RS11010
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11010
old locus tag: AUC62_02237
so part of: sequence
location: complement(12591..12950)
location: region:12591-12950:-1
so has part: feature:12591-12950:-1:exon
subclass of: SO_0000010

66963441
type: Gene
SIO_000068: ncbigene

position:12591:-1
position: 12591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12950:-1
position: 12950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12591-12950:-1:exon

AUC62_RS11010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11010
old locus tag: AUC62_02237
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002340715.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELDLGNNAYDILNDWHPNAAKEELTAQLTKQVLVEKEQLPKLLSREDLKERWEMNSRQSVHQVATRPDFPAPILTFNHGKTLLYLETEIQIFEVNHPWLITMSARLSYSHWILHNVIN
SIO_010081: AUC62_RS11010
subclass of: SO_0000673
so part of: AUC62_RS11010
location: complement(12591..12950)
location: region:12591-12950:-1
so has part: feature:12591-12950:-1:exon

WP_010372444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12591-12950:-1:exon

AUC62_RS11015
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11015
old locus tag: AUC62_02238
so part of: sequence
location: complement(12992..13282)
location: region:12992-13282:-1
so has part: feature:12992-13282:-1:exon
subclass of: SO_0000010

66963442
type: Gene
SIO_000068: ncbigene

position:12992:-1
position: 12992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13282:-1
position: 13282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12992-13282:-1:exon

AUC62_RS11015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11015
old locus tag: AUC62_02238
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005919384.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNFDEYMTNDNLSLQAIIRYDDGREIRVFNVRDKRCCVFIQNDNEHFWLLRERILEPPMLHNITESMYQAGIYDNYYHLSIEVFHGDDSKVYYPR
SIO_010081: AUC62_RS11015
subclass of: SO_0000673
so part of: AUC62_RS11015
location: complement(12992..13282)
location: region:12992-13282:-1
so has part: feature:12992-13282:-1:exon

WP_010372443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12992-13282:-1:exon

AUC62_RS11020
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11020
old locus tag: AUC62_02239
so part of: sequence
location: complement(13279..13458)
location: region:13279-13458:-1
so has part: feature:13279-13458:-1:exon
subclass of: SO_0000010

66963443
type: Gene
SIO_000068: ncbigene

position:13279:-1
position: 13279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13458:-1
position: 13458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13279-13458:-1:exon

AUC62_RS11020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11020
old locus tag: AUC62_02239
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005919380.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRITKAQLDNIITVSDKQGPDTASQTYFADAFDATMDNTGDTDLLGYLLLDHYFGDKS
SIO_010081: AUC62_RS11020
subclass of: SO_0000673
so part of: AUC62_RS11020
location: complement(13279..13458)
location: region:13279-13458:-1
so has part: feature:13279-13458:-1:exon

WP_010372442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13279-13458:-1:exon

AUC62_RS11030
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11030
old locus tag: AUC62_02240
so part of: sequence
location: 13754..15604
location: region:13754-15604:1
so has part: feature:13754-15604:1:exon
subclass of: SO_0000010

66963444
type: Gene
SIO_000068: ncbigene

position:13754:1
position: 13754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15604:1
position: 15604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13754-15604:1:exon

AUC62_RS11030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11030
old locus tag: AUC62_02240
EC number: 7.2.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010276737.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MKHNILKHKNKITSISGLLIALALIAHFIFANTTISNSAFIIASILGVTPISLQAYQAMKVKVVSIDVLVTIAVIGALFIQNYEESAIVTFLFLFGSYLEQRTLNQTRSAIKELTEMAPETAFKQLTGGQFAEVDIDEVEEGDILLVKTGAKIPVDGRVTTGKGYVNEANITGESLPLKKEKDDEVFAGTIMDNGTIQIVADRVGEDSTFGKIIDLVEEAQDSKSEAERFIDQFSRWYTPAVLTIGLLVWVLTKDTELAITVLVLGCPGALVIGVPVSNVTGIGNGAKNGVLFKGSEVISHFANADTVLFDKTGTLTEGKPEVSDIIYYGSNQEEDLSLLLSVESESDHPLAVAIVNKLAQYKVRPIENTQVVKGGGVIAHVDGHVVSVGNKTLMQQESIPLSDDVLKKLNKLERTGNSIVLTAVDHKLIMLMGIRDKVRPGVKQDLQKLKSLGIKNLIVLSGDNQGTVNLVKKELGLTEAHGDMLPEDKQAFLKRRQHSGEIVVFIGDGVNDSPSLATAEVGIAMGNGTDVAIESSDIVLMNSNFNRLPHALGLAKVTYANMRQNILIAVGVVIILLVSLIFSEWMSMSIGMLVHEASILVVILNAMRLRGYQLR
SIO_010081: AUC62_RS11030
subclass of: SO_0000673
so part of: AUC62_RS11030
location: 13754..15604
location: region:13754-15604:1
so has part: feature:13754-15604:1:exon

WP_010372440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13754-15604:1:exon

AUC62_RS11035
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11035
old locus tag: AUC62_02241
so part of: sequence
location: 15668..15904
location: region:15668-15904:1
so has part: feature:15668-15904:1:exon
subclass of: SO_0000010

66963445
type: Gene
SIO_000068: ncbigene

position:15668:1
position: 15668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15904:1
position: 15904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15668-15904:1:exon

AUC62_RS11035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11035
old locus tag: AUC62_02241
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010276741.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy-metal-associated domain-containing protein
translation: MTKAILKLETLTCPSCLQKIERGLKQTAGVKKDSVKVLFNASKVKVDFDENQVNLNTIEKAIEDLGYPVISSKVKEGA
SIO_010081: AUC62_RS11035
subclass of: SO_0000673
so part of: AUC62_RS11035
location: 15668..15904
location: region:15668-15904:1
so has part: feature:15668-15904:1:exon

WP_010372439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15668-15904:1:exon

AUC62_RS11040
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11040
old locus tag: AUC62_02242
so part of: sequence
location: 15906..16457
location: region:15906-16457:1
so has part: feature:15906-16457:1:exon
subclass of: SO_0000010

66963446
type: Gene
SIO_000068: ncbigene

position:15906:1
position: 15906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16457:1
position: 16457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15906-16457:1:exon

AUC62_RS11040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11040
old locus tag: AUC62_02242
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010276748.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
translation: MTTVNERQEKLAAEQAYKEHIHHTKINSAAVTDHILANIHTLHVKLHQYHWYVKGKNFYALHNVFENLYNENEAWFDKIAERLLASGFKPASTTTEFQEFTTISEDSSEKYYTADEMVLQIVEDFRSNREFTIRAIRLAQEEGNDALEDSLISYKAYLDVNIWQLQAFINKDALEDDDYIDND
SIO_010081: AUC62_RS11040
subclass of: SO_0000673
so part of: AUC62_RS11040
location: 15906..16457
location: region:15906-16457:1
so has part: feature:15906-16457:1:exon

WP_010372438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15906-16457:1:exon

AUC62_RS11045
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11045
old locus tag: AUC62_02243
so part of: sequence
location: 16474..17166
location: region:16474-17166:1
so has part: feature:16474-17166:1:exon
subclass of: SO_0000010

66963447
type: Gene
SIO_000068: ncbigene

position:16474:1
position: 16474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17166:1
position: 17166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16474-17166:1:exon

AUC62_RS11045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11045
old locus tag: AUC62_02243
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003125448.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Crp/Fnr family transcriptional regulator
translation: MAYHNHHSHVDCIRLVPIFNHLNDEQMHLIAQSANEVQYVKNELLFRFGDKDDTLYIINNGRVRIYSLSESGREQTIRILHPGDFMGEVAVLQTEGYHSNYAEAISETSICKIHKKDLDQYLDRYPEIMRRILSDITKRLQLSEKQTVQVSIEPVEARIIDFLSENVEDEKNHTYVTLPMSKKDLATYLGTTPETISRKFSSLEERGLIKRHTQKCVEIFDLDELLFVSS
SIO_010081: AUC62_RS11045
subclass of: SO_0000673
so part of: AUC62_RS11045
location: 16474..17166
location: region:16474-17166:1
so has part: feature:16474-17166:1:exon

WP_010372437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16474-17166:1:exon

AUC62_RS11055
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11055
old locus tag: AUC62_02244
so part of: sequence
location: 17913..18398
location: region:17913-18398:1
so has part: feature:17913-18398:1:exon
subclass of: SO_0000010

66963449
type: Gene
SIO_000068: ncbigene

position:17913:1
position: 17913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18398:1
position: 18398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17913-18398:1:exon

AUC62_RS11055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11055
old locus tag: AUC62_02244
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010372436.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VIT1/CCC1 transporter family protein
translation: MKKYVSAIVYGGLDGIITTFAVVAGSVGGNVSNIVIIILGFSNLLADGFSMGAGAYLSATSDNNQSKSKALAAGIATFISFNVFGLIPLGAYLITNAFIHDKSIAFPIAFVIVGVSLALLGWVKANLSEQKVRTEILRTLSVGYVAAIVAYGVGILLNYYL
SIO_010081: AUC62_RS11055
subclass of: SO_0000673
so part of: AUC62_RS11055
location: 17913..18398
location: region:17913-18398:1
so has part: feature:17913-18398:1:exon

WP_010372436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17913-18398:1:exon

AUC62_RS11060
type: Gene
subclass of: SO_0000704
RO_0002162: 137591
locus tag: AUC62_RS11060
old locus tag: AUC62_02245
so part of: sequence
location: complement(19207..19797)
location: region:19207-19797:-1
so has part: feature:19207-19797:-1:exon
subclass of: SO_0000010

66963450
type: Gene
SIO_000068: ncbigene

position:19207:-1
position: 19207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19797:-1
position: 19797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19207-19797:-1:exon

AUC62_RS11060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 137591
locus tag: AUC62_RS11060
old locus tag: AUC62_02245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017369153.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MVQQIVLPIKDSNVLKMVQDTLLDSFRAGRRNYTIFQVGKATLLRVSDVMTLKKSDVYNPDGSVKNTAFIHDKKTGKANTLYLKPVQQDLLQYHDWLVQQNINSDWLFPSTSHPDRHITKKQFYKVMARVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLTYLGLDQASRETMLDQIDFG
SIO_010081: AUC62_RS11060
subclass of: SO_0000673
so part of: AUC62_RS11060
location: complement(19207..19797)
location: region:19207-19797:-1
so has part: feature:19207-19797:-1:exon

WP_010372435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19207-19797:-1:exon