Planococcus kocurii strain ATCC 43650 plasmid unnamed, complete sequence.
type: Entry
definition: Planococcus kocurii strain ATCC 43650 plasmid unnamed, complete sequence.
sequence version: NZ_CP013660.2
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP013660.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04331436
keyword: GSC:MIxS
keyword: MIGS:3.0
keyword: RefSeq
source: Planococcus kocurii
organism: Planococcus kocurii
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Planococcus.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP013660.2.\n\nOn Mar 28, 2016 this sequence version replaced NZ_CP013660.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS:3.0-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Analysis of marine bacteria Planococcus\n kocurii ATCC 43650T\ncollection_date :: 1/1/1957\nlat_lon :: Missing\ngeo_loc_name :: Japan\nbiome :: Skin\nfeature :: North Sea cod\nmaterial :: Skin of the North Sea cod\nenv_package :: host-associated (Skin of the North Sea cod)\nnum_replicons :: NA\nref_biomaterial :: Hao & Komagata (1985)\nbiotic_relationship :: free living\ntrophic_level :: heterotroph\nrel_to_oxygen :: aerobe\nisol_growth_condt :: Hao & Komagata (1985)\nseq_meth :: Single Molecules Real-Time (SMRT) sequencing\nassembly :: De novo assembly; Hierarchical Genome\n Assembly Process (HGAP) version 3\nfinishing_strategy :: complete; 230.5X coverage; 2 contigs (1\n chromosome, 1 plasmid)\n##MIGS:3.0-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: HGAp assembly version 2\nGenome Coverage :: 279.99x\nSequencing Technology :: PacBio SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 20:18:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,434\nCDSs (total) :: 3,331\nGenes (coding) :: 3,297\nCDSs (with protein) :: 3,297\nGenes (RNA) :: 103\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :…

sequence
subclass of: SO_0000155
sequence length: 13524
topology: circular
so has quality: SO_0000988
location: 1..13524
location: region:1-13524:1
RO_0002162: 1374

NZ_CP013660
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04331436
type: BioSample
SIO_000068: biosample

1
title: Complete genome of Planococcus kocurri type strain
author: See-Too, W.S.
journal: Unpublished

2
title: Direct Submission
author: See-Too, W.S.
journal: Submitted (20-JAN-2016) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia
comments: Sequence update by submitter

3
title: Direct Submission
author: See-Too, W.S.
journal: Submitted (10-DEC-2015) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13524:1
position: 13524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13524:1:source
so part of: sequence
organism: Planococcus kocurii
mol type: genomic DNA
strain: ATCC 43650
isolation source: Fish
culture collection: ATCC:43650
type material: type strain of Planococcus kocurii
plasmid: unnamed
country: Japan
collection date: 1985

1374
type: Taxonomy
SIO_000068: taxonomy

AUO94_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00005
old locus tag: AUO94_00055
so part of: sequence
location: join(11985..13524,1..377)
location: region:1-13524:1
so has part: feature:11985-13524:1:exon
so has part: feature:1-377:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:11985-13524:1:exon

position:11985:1
position: 11985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-377:1:exon

position:377:1
position: 377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AUO94_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00005
old locus tag: AUO94_00055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002505050.1
GO function: GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MSKSKWWKQPRTVLLIISGITTVFTLISELFLGLPEIWAVALYGVAIIIGGIYPAKSAWMDLRRRKLSINTLLIVGVIGTIYLGLWEEAAGLVVIFSLGEVLEAYAVNKARDSVRALVELAPREATVLREGREVRILADEVEIGDRVLIRPGEKIPVDGVVVSGTSTADQSTITGESIPVAKISGDEVYASTMNGRGALEIEVTKLAQDTTLSKIIELVANAQGDKGKAQRFSERFGEVYTPIMFVIAVLMVVIPTLFFGQPFDTWLYRALIVLVVSCSCSLVISVPVAVVTGVGNAARNGVMVKGGSYMETASHIQVVAFDKTGTLTVGKPSVTDIVSVSDLSKEKLLGIAGALEKLSEHPLAEAILQEASKRNINLPGVEEFDTLTGRGAKGSINRTTYYIGSPRLFSELNVKLNQDQLKQIETLQGQGKTVTLLGTADLVLGLIAIADRPKENAKQAIQRLKTTGVKRIVMLTGDNRLTGEAIGRELGVDEVRAELLPEDKITAIKELQKKYGLVAMVGDGVNDAPALAQADVGIAMGVQGTDVALETADIALMQDNLDQLVYLIKLSRKTVAKIHQNIGFSLALVALLIVTALTGVMSLTTGLLLNEGSALVVIANAMVLRKYQMNKANAIGNE
SIO_010081: AUO94_RS00005
subclass of: SO_0000673
so part of: AUO94_RS00005
location: join(11985..13524,1..377)
location: region:1-13524:1
so has part: feature:11985-13524:1:exon
so has part: feature:1-377:1:exon

WP_062429918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11985-13524:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-377:1:exon

AUO94_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00010
old locus tag: AUO94_00060
so part of: sequence
location: 464..1840
location: region:464-1840:1
so has part: feature:464-1840:1:exon
subclass of: SO_0000010

position:464:1
position: 464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1840:1
position: 1840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464-1840:1:exon

AUO94_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00010
old locus tag: AUO94_00060
inference: COORDINATES: protein motif:HMM:NF016124.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4346 domain-containing protein
translation: MGITEGIKSIHKQLDTIRKIPKCVGCECVLDVMTAVEQDLEDIDKPIAKEVQLDLKQWVDEGNKVRHNCLGCEVCFPIKPYNHFSSLINGSNEIEINGAACGCNDNACGSQPQVNSTACGCDDDSCEGEPQVNNTACGCDENKSKNTHPSNCSCELKTEVQKQSVCGTVDPNDSNVASPSTQQEQKWPIAEGNYLVGNDTSFVAICTLADTDLPSEIQGSGLLNHISIVGTLSTENLGIERLIRNVTANPNISHLILCGRDSRGHQAGQAILSLKENGIDDKYRIIGAVGPRPVLKNITLKEIEIFRQRVKIVDEIGTRDVERLHQVVRAYEGKPNGDPVMLLPIIQEPKIVKAERLKNDEWVHDPEGFFLVILDRNKKSIRCEHYILDGTLNEVIEGKLASDIANTAIKRGLLSRLDHAAYLGKELAKAETALAYDMPYTQDLPLSKSKALNQTVVS
SIO_010081: AUO94_RS00010
subclass of: SO_0000673
so part of: AUO94_RS00010
location: 464..1840
location: region:464-1840:1
so has part: feature:464-1840:1:exon

WP_051627662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:464-1840:1:exon

AUO94_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00015
old locus tag: AUO94_17025
so part of: sequence
location: 1936..3273
location: region:1936-3273:1
so has part: feature:1936-3273:1:exon
subclass of: SO_0000010

position:1936:1
position: 1936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3273:1
position: 3273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1936-3273:1:exon

AUO94_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00015
old locus tag: AUO94_17025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013370906.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3 family transposase
translation: MEILNLPHFNIKQFAENEHDFLIQVETASPPSFCPHCGCVANLYKHDNRDHLCMDLPIHGKRVGLLVKRQRYKCRECNQTFWERLEHTIDEKRNCTKRLLSYVEKQSLKRTFVSISEDVGLNEKTIRNIFRDYINRLEETLRFETPNWLGIDEIHIIKPRCVLTNIEERTLLDVLPNRNKETVVSYLSRLPNRGRIQYVTMDMWRPYKDAVKAVLPKATIIVDKFHVVRMANQALESIRKQLREGLSPKERRGLMHDRFILLKRHKELTEMDKITLDLWTKNHPSLGIAYDLKESFFDIWDTDSRQKAYLRYHDWKAKIPKELQSAFEPLTKAMANWEEEIFNYFDHRITNAYTESLNSLIRVTNRLGRGYSFEALRAKILFTEGLQKERKPKYQKRLDDYELRDYNYPMFEKMFPVGVVRERERGELLGVDISTLIEKLEKGEL
SIO_010081: AUO94_RS00015
subclass of: SO_0000673
so part of: AUO94_RS00015
location: 1936..3273
location: region:1936-3273:1
so has part: feature:1936-3273:1:exon

WP_029594550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1936-3273:1:exon

AUO94_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00020
old locus tag: AUO94_00005
so part of: sequence
location: complement(3312..3875)
location: region:3312-3875:-1
so has part: feature:3312-3875:-1:exon
subclass of: SO_0000010

position:3312:-1
position: 3312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3875:-1
position: 3875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3312-3875:-1:exon

AUO94_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00020
old locus tag: AUO94_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006830820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSKQHEIKDVQPIRSLEKIEDMKWSLKKWCGERDYILFLLGINSGLRVGDLLKIKVSEIQGKQVVSLREGKTGKRRTIHLGNIYDELNAYIGTLNGSEWLFPSRKGQNPITRVQAYRQLNKAAQMVDMPDGIGTHTLRKTFGYWHYKQFRDIAELQNILNHAHPQITLRYIGITDEQIESNLKSFRL
SIO_010081: AUO94_RS00020
subclass of: SO_0000673
so part of: AUO94_RS00020
location: complement(3312..3875)
location: region:3312-3875:-1
so has part: feature:3312-3875:-1:exon

WP_062429911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3312-3875:-1:exon

AUO94_RS17515
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS17515
so part of: sequence
location: 3874..4011
location: region:3874-4011:1
so has part: feature:3874-4011:1:exon
subclass of: SO_0000010

position:3874:1
position: 3874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4011:1
position: 4011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3874-4011:1:exon

AUO94_RS17515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS17515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRELLLVDCCGFIGSLPYVANYSRHFDQKKKERRQRKANAVESMI
SIO_010081: AUO94_RS17515
subclass of: SO_0000673
so part of: AUO94_RS17515
location: 3874..4011
location: region:3874-4011:1
so has part: feature:3874-4011:1:exon

WP_218916856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3874-4011:1:exon

AUO94_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00030
old locus tag: AUO94_00010
so part of: sequence
location: complement(4137..4427)
location: region:4137-4427:-1
so has part: feature:4137-4427:-1:exon
subclass of: SO_0000010

position:4137:-1
position: 4137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4427:-1
position: 4427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4137-4427:-1:exon

AUO94_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00030
old locus tag: AUO94_00010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLDVGAESLWEILKSIFGRIKYSFLSKNQKIEFNLSQLQKKYWFEQLVLESPSLVQLIKNDHELQTYLTSRRKLQKVLHNSTARKKFKEMINQKL
SIO_010081: AUO94_RS00030
subclass of: SO_0000673
so part of: AUO94_RS00030
location: complement(4137..4427)
location: region:4137-4427:-1
so has part: feature:4137-4427:-1:exon

WP_058383823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4137-4427:-1:exon

AUO94_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00035
old locus tag: AUO94_00015
so part of: sequence
location: complement(4516..4890)
location: region:4516-4890:-1
so has part: feature:4516-4890:-1:exon
subclass of: SO_0000010

position:4516:-1
position: 4516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4890:-1
position: 4890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4516-4890:-1:exon

AUO94_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00035
old locus tag: AUO94_00015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKILLLILVSVLLSACNSNDSELSFSEIDTVPDNIQALIEPTYTLQLINEGESVAYIVYQTKGTVATDLEAQEDTVNVKLDVSNSDNDDIKQHVYKLTLDPNHEKIDIFINGESTSFDNISGL
SIO_010081: AUO94_RS00035
subclass of: SO_0000673
so part of: AUO94_RS00035
location: complement(4516..4890)
location: region:4516-4890:-1
so has part: feature:4516-4890:-1:exon

WP_058383824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4516-4890:-1:exon

AUO94_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00040
old locus tag: AUO94_00020
so part of: sequence
location: complement(5036..5896)
location: region:5036-5896:-1
so has part: feature:5036-5896:-1:exon
subclass of: SO_0000010

position:5036:-1
position: 5036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5896:-1
position: 5896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5036-5896:-1:exon

AUO94_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00040
old locus tag: AUO94_00020
inference: COORDINATES: protein motif:HMM:NF025390.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4240 domain-containing protein
translation: MKKKPIPKQGEVYAAKLPNEYWTALVVLHKIENSYLVYATAYYELIPPTLEDTRLTQFHYREDLYSKDRKPAMYWLDGKPGADFHLIGSIDLKEKSEIKESNTYAGIWKNYLPSHIMWEKEREAGVFQEKIQSFEQADSKAVVEALEDDVFWNLIDLIDWKKRNPMNPLIGRLKKDTEEMIFAFEETLSHKLFLLDTPAHAGIPDQPETYLSVDAFLYARCAVIAKGKDCFNQTVKNATAINMEWDAEELLEVASEAYSKKTGEPFDYASSYDYETYSNRLAWEGK
SIO_010081: AUO94_RS00040
subclass of: SO_0000673
so part of: AUO94_RS00040
location: complement(5036..5896)
location: region:5036-5896:-1
so has part: feature:5036-5896:-1:exon

WP_058383825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5036-5896:-1:exon

AUO94_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00045
old locus tag: AUO94_00025
so part of: sequence
location: complement(5996..6574)
location: region:5996-6574:-1
so has part: feature:5996-6574:-1:exon
subclass of: SO_0000010

position:5996:-1
position: 5996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6574:-1
position: 6574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5996-6574:-1:exon

AUO94_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00045
old locus tag: AUO94_00025
inference: COORDINATES: protein motif:HMM:NF024803.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MMTPSEVCKQLNISPSTLRKYSLRFESEGILFKRNKSNSRIYTVTEVAALRESMTVTKSGDVTFENAVREAAEGLKGASTITPENGVTSTPPRRHDAVATAVILKKLEDLEEENRSLKEEMRKRDSLFVEVLEEMKNKLDRIEENQKQLAAPMPEESELDSPESSSQQPESEPETVTPKKDTRGLWARIWNK
SIO_010081: AUO94_RS00045
subclass of: SO_0000673
so part of: AUO94_RS00045
location: complement(5996..6574)
location: region:5996-6574:-1
so has part: feature:5996-6574:-1:exon

WP_058383826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5996-6574:-1:exon

AUO94_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00050
old locus tag: AUO94_00030
so part of: sequence
location: complement(6805..7122)
location: region:6805-7122:-1
so has part: feature:6805-7122:-1:exon
subclass of: SO_0000010

position:6805:-1
position: 6805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7122:-1
position: 7122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6805-7122:-1:exon

AUO94_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00050
old locus tag: AUO94_00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011067787.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDILQFFIGPVIVFLIVHVIMSIVYKDAEKKDKGFVFIGYKLSYRRKFIRSIWMLPFILVLYIGIYWLGDLTTNEYMTIGVIFLLLVLIDIAISYVKWKKNEKVA
SIO_010081: AUO94_RS00050
subclass of: SO_0000673
so part of: AUO94_RS00050
location: complement(6805..7122)
location: region:6805-7122:-1
so has part: feature:6805-7122:-1:exon

WP_058383827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6805-7122:-1:exon

AUO94_RS17570
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
gene: mobV
locus tag: AUO94_RS17570
pseudo: true
so part of: sequence
location: complement(<7973..8584)
location: region:7973-8584:-1
so has part: feature:7973-8584:-1:exon
subclass of: SO_0000010

position:7973:-1
position: 7973
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:8584:-1
position: 8584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7973-8584:-1:exon

AUO94_RS17570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
gene: mobV
locus tag: AUO94_RS17570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001619005.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobV family relaxase
SIO_010081: AUO94_RS17570
subclass of: SO_0000673
so part of: AUO94_RS17570
location: complement(<7973..8584)
location: region:7973-8584:-1
so has part: feature:7973-8584:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7973-8584:-1:exon

AUO94_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00060
old locus tag: AUO94_00040
so part of: sequence
location: complement(8961..10109)
location: region:8961-10109:-1
so has part: feature:8961-10109:-1:exon
subclass of: SO_0000010

position:8961:-1
position: 8961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10109:-1
position: 10109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8961-10109:-1:exon

AUO94_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00060
old locus tag: AUO94_00040
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNNSYLVTQSNDLIEARHNNPLTAREQKIVLTMVSMIEPSDSDFKHYRISIREFTEMLGLEGRTKYTEIKQIAKQLMSKTIEIPLGDGDWLLANWVSSAKYLKGEGVIDLSFSPDLKPYMLQLKNQFTSYRLSNVLSLNSTYSIRLYELMKKWQHLGRWECSVVELKGKMGVEEGQYKQYGHFKSRVLKTSVDEVNDKTDLYIIYKEIKKGRSVNKIEFIIRHAPEKEIHVPRLEEERETAKESSVTDEMRARLNELAEGYQFDATFFAQLHQGASLIWKDDAEKELELLIRYVNEEKTVKNPLGFIKSKITSAWEIHEAGGRITFADLQPVKERWAGREEKLPDWFTSKDEPQEIPKSNPKLEEEKAEILKKLAQKKGSQF
SIO_010081: AUO94_RS00060
subclass of: SO_0000673
so part of: AUO94_RS00060
location: complement(8961..10109)
location: region:8961-10109:-1
so has part: feature:8961-10109:-1:exon

WP_058383831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8961-10109:-1:exon

AUO94_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00065
old locus tag: AUO94_00045
so part of: sequence
location: 10990..11316
location: region:10990-11316:1
so has part: feature:10990-11316:1:exon
subclass of: SO_0000010

position:10990:1
position: 10990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11316:1
position: 11316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10990-11316:1:exon

AUO94_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00065
old locus tag: AUO94_00045
inference: COORDINATES: protein motif:HMM:NF033788.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MDQCITDIPRVRRGDVPLPQEEAIQRIASVTKAFSDPIRLKMVYLLSKQSDLCTCEFEELLDLSQSKVSYHLKILLDAGVIDREIHGSWSHYSLRNPKILEQVHALSQ
SIO_010081: AUO94_RS00065
subclass of: SO_0000673
so part of: AUO94_RS00065
location: 10990..11316
location: region:10990-11316:1
so has part: feature:10990-11316:1:exon

WP_051627660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10990-11316:1:exon

AUO94_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 1374
locus tag: AUO94_RS00070
old locus tag: AUO94_00050
so part of: sequence
location: 11588..11767
location: region:11588-11767:1
so has part: feature:11588-11767:1:exon
subclass of: SO_0000010

position:11588:1
position: 11588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11767:1
position: 11767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11588-11767:1:exon

AUO94_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1374
locus tag: AUO94_RS00070
old locus tag: AUO94_00050
inference: COORDINATES: protein motif:HMM:NF012621.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation transporter
translation: MKKEVLRVSGMDCPSCAKDIEKTVAKLNGVEKAEVNFIAEKLTVTYDDSQLPREKSRKI
SIO_010081: AUO94_RS00070
subclass of: SO_0000673
so part of: AUO94_RS00070
location: 11588..11767
location: region:11588-11767:1
so has part: feature:11588-11767:1:exon

WP_237150094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11588-11767:1:exon