Planococcus kocurii strain ATCC 43650 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Planococcus.
Complete genome of Planococcus kocurri type strain
Submitted (20-JAN-2016) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia
Submitted (10-DEC-2015) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia
REFSEQ INFORMATION: The reference sequence is identical to\nCP013660.2.\n\nOn Mar 28, 2016 this sequence version replaced NZ_CP013660.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS:3.0-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Analysis of marine bacteria Planococcus\n kocurii ATCC 43650T\ncollection_date :: 1/1/1957\nlat_lon :: Missing\ngeo_loc_name :: Japan\nbiome :: Skin\nfeature :: North Sea cod\nmaterial :: Skin of the North Sea cod\nenv_package :: host-associated (Skin of the North Sea cod)\nnum_replicons :: NA\nref_biomaterial :: Hao & Komagata (1985)\nbiotic_relationship :: free living\ntrophic_level :: heterotroph\nrel_to_oxygen :: aerobe\nisol_growth_condt :: Hao & Komagata (1985)\nseq_meth :: Single Molecules Real-Time (SMRT) sequencing\nassembly :: De novo assembly; Hierarchical Genome\n Assembly Process (HGAP) version 3\nfinishing_strategy :: complete; 230.5X coverage; 2 contigs (1\n chromosome, 1 plasmid)\n##MIGS:3.0-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: HGAp assembly version 2\nGenome Coverage :: 279.99x\nSequencing Technology :: PacBio SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 20:18:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,434\nCDSs (total) :: 3,331\nGenes (coding) :: 3,297\nCDSs (with protein) :: 3,297\nGenes (RNA) :: 103\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 17 of 34\nPseudo Genes (incomplete) :: 12 of 34\nPseudo Genes (internal stop) :: 11 of 34\nPseudo Genes (multiple problems) :: 6 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002505050.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016124.2
COORDINATES: similar to AA sequence:RefSeq:WP_013370906.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006830820.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025390.2
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011067787.1
COORDINATES: similar to AA sequence:RefSeq:WP_001619005.1
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF012621.2