Sphingomonas paucimobilis strain FDAARGOS_908 plasmid unnamed3.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (02-DEC-2020) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065672.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Coverage :: 849.08x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 15:15:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,081\nCDSs (total) :: 4,014\nGenes (coding) :: 3,967\nCDSs (with protein) :: 3,967\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 23 of 47\nPseudo Genes (incomplete) :: 31 of 47\nPseudo Genes (internal stop) :: 5 of 47\nPseudo Genes (multiple problems) :: 11 of 47\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
type strain of Sphingomonas paucimobilis
COORDINATES: protein motif:HMM:NF027967.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
fibronectin type III domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF019335.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_010189216.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054708.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004213420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054706.1
COORDINATES: similar to AA sequence:RefSeq:WP_017500317.1
COORDINATES: similar to AA sequence:RefSeq:WP_010189174.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165446.1
COORDINATES: similar to AA sequence:RefSeq:WP_010188150.1
COORDINATES: similar to AA sequence:RefSeq:WP_010188956.1
T-complex 10 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017348599.1
COORDINATES: similar to AA sequence:RefSeq:WP_004619928.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_010189154.1